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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052830 ID=TCONS_00052830|Name=TCONS_00052830|organism=Clytia hemisphaerica|type=transcript|length=3372bpRun BLAST on NCBI protein sequence of TCONS_00052830-protein >TCONS_00052830-protein ID=TCONS_00052830-protein|Name=TCONS_00052830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp MSSNNTQNESKAPESTSNSSNHKSSSSSTKKTGTRVFKKSTPNGKVTVYIRun BLAST on NCBI transcript from alignment at scaffold_220:76709..96471- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052830 ID=TCONS_00052830|Name=TCONS_00052830|organism=Clytia hemisphaerica|type=transcript|length=19763bp|location=Sequence derived from alignment at scaffold_220:76709..96471- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_220:76709..96471- >TCONS_00052830 ID=TCONS_00052830|Name=TCONS_00052830|organism=Clytia hemisphaerica|type=CDS|length=21600bp|location=Sequence derived from alignment at scaffold_220:76709..96471- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052830 vs. Swiss-Prot (Human)
Match: ARRB1 (Beta-arrestin-1 OS=Homo sapiens GN=ARRB1 PE=1 SV=2) HSP 1 Score: 472.241 bits (1214), Expect = 4.878e-155 Identity = 242/416 (58.17%), Postives = 311/416 (74.76%), Query Frame = 3
Query: 408 GTRVFKKSTPNGKVTVYIGKRDFYDHIEHCEPVDGVVLVDRDHIKDKTVFCHVLAAFRYGREDLDVLGLTFRKDLYLAKKQVYPPEIEEEEPLTRLQERLIKKLGKNAYPFKFMLPKNTPSSVTLQPAPGDTGKPCGVDYELRVFLSETTDEKEYKKNSVRLAIRKITYAPSSEISQPPPMIETSKEFMMCPHPLFLEASLDKEMYYHGESIAVNVHISNRSNKTVKKIKLAVRQYADICLFSTAQYKCPVATIETEEGFPVGQSGTLSKVIHITPLLADNKDKRGLALDGQLKHEDTNLASSTIMDSATQKENLGIIVHYKVKIRLVVNGIG-------NDLAVELPFTLXXXXXXXXXXXXVVQRRYSEITQEQDAEQPPIDSDLIKFDTDGPERQAHDDDLVFEEFARMRVRG 1634
GTRVFKK++PNGK+TVY+GKRDF DHI+ +PVDGVVLVD +++K++ V+ + AFRYGREDLDVLGLTFRKDL++A Q +PP E+++PLTRLQERLIKKLG++AYPF F +P N P SVTLQP P DTGK CGVDYE++ F +E +EK +K+NSVRL IRK+ YAP E P P ET+++F+M PL LEASLDKE+YYHGE I+VNVH++N +NKTVKKIK++VRQYADICLF+TAQYKCPVA E ++ V S T KV +TP LA+N++KRGLALDG+LKHEDTNLASST++ +E LGIIV YKVK++LVV+ G +D+AVELPFTL HP + + +E + P+D++LI+ DT+ DDD+VFE+FAR R++G
Sbjct: 5 GTRVFKKASPNGKLTVYLGKRDFVDHIDLVDPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAP--ERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDT--VAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHP-----------KPKEEPPHREVPENETPVDTNLIELDTN-------DDDIVFEDFARQRLKG 398 The following BLAST results are available for this feature:
BLAST of TCONS_00052830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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