TCONS_00052831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052831
Unique NameTCONS_00052831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052831 ID=TCONS_00052831|Name=TCONS_00052831|organism=Clytia hemisphaerica|type=transcript|length=3489bp
AACAGGtcaaattaattcaaaatgagACTACTCCTTGGAATAAATATTGT
GCTGACGACAGCAATCTTTGTTGATGCTTATACGCAATACACAGtcgaga
aaatgaaaaacaaatgcATCAAAGTGACTTCCAAAGGATCCAAATGTCTG
AATTCGTTGAATGGAAATGTCATATGTATGGTAGAATTGACTGGGTCAAG
AAAAGTTCTTCAAAAATGTGAGAATAAACCTATCAGGACTATTACGATCA
TTTGTTGTCCAGAAGGTGTATATTATCAACCTACAGTGTCGACGGTAGAA
CAACGAACAACCGAGGTAACCGCAACAACAAAACATATGACAAAAACGAC
TTCAATGTCCATAATAAAACATTCTGAGAAAGATTTTACTAAAAAGGCGA
AAACCACTACAATATACCAAACTCTGAATAAAAAATCTACAGCTTCAAGG
CCTACGATTGGCTCTGCGACGCCATTAACAACGACTGTTTGGAATAAAAC
TTCAACTGAGGCAACTATCTCAAATAAACAAGAGCTCAACCCTGAAACGA
CAGTAGCAACCCAATCATGCAATTTGAAACAAGCTTTAAAGGAATTTAGA
AGCAAGATGCCtttgaaacaaaacaaatgCAAAGACTTCAAGTCTTACAA
GCAAGAGCTGGATGGTTTATGGAGCATGCATGATGCGAATTTAGACATTA
TCAAAAATCAGATGAgagatgaaaagaaaagaattgaTGCATTGATTGGA
AAGAACAAAATCTACAAAGTTGATCTGAAGAAAATGAACCGTTCCTTAGA
GATTTGGAAAGCATCGTTAAAAGCATTCGAGGAAGAACACTACCATGGAT
TAGTGAGAATCAGTTCAAAGTATCATAACTGCATTTTCATCAAACTCATG
ATCCAAAAACGTGATATTATGATGAAATTCATTGATTGGGTACAAAGTTC
ATCAGATCCTGATATGACAATCGTTTACATGATTGCCAAAGATCTCCAGA
GCTTCGAAGATGATTATAAACAACAACAGGCAAGGATTTTCAAGCATTTT
GAGTTTTTGTCACCAAAATTACGAAGAGTAGCTTTGAGGCAGTTGGAGAA
TCACCATATCGCATTGGAGAGTGTTCAATTGGCAAAATGTGTCGATAGTC
AACAACATACAGGATTTAGTGGACCAAAAGGTGTAGCTTTGGCAGATGTC
TTGTCGAAACTGAATGCAACCAAAGAATCTGACAAACACCAACACGAAGA
CATACAGAAtgaattggaaaatttcttATCCAGCGAAAAGCTAAAATGGA
TCAAAGCTTCGATTGAAACAGACGAGGCAATGACATCATCAGTTGCATCA
GGTGAAGATTCAAATAGTCATTCAAACGGAAGTGGCGGTGGCGAATATAG
CGGAGATAATAGTGATACTGAATCTTCGGGAGATAATAAAGAAGGAAGTG
GGGATGTTATGGTGGAAAATAATGACGATGAAGATGCTATGAGACATGTT
TCGAAACCGACACAAACAACCTCGAGACCAAGAAATACAAGacCTCCAGA
TATTAAAAagagtcaaaaatcaaaaatgacgaCAACCGAGAAATATCGAC
CGAGACTTTTACCGACAACCGACGTACCAAGTCAAGAGAATCGGTTAGAA
CTCGCCATCAAACGATTATTAAACGAATATCCGAGCGAAAAGAATGGTTG
TGACGAGAAAACAATCGATAGGAGTGAGGAAGAATCAAGAATGGCTTTTT
CAAGCGAAACAGCTCTTGTTGTCCAGAGATGGGATGAAGCAcaaaagaaa
tattcaaaaatgaaattaaacgaTTATCGAAAAGCTGAACGATTTTTATT
GAAAGCATTAGGGGCTGTTACAAAATCCATGAACAATTTGAAACGAAGCG
AACAAACAAGCGATGAAGAGAACAGAAGAAACCGAGCGGAGTGCATCAAT
AGACAAATTTTGAAAGACCAACGTGACGCGTTAGTGGATTACACTATCGA
GATCCAAAAACCGAAACTGAGTTTAACAAAAATCGTTAAGCAATTGAAAC
GTTTTATCGACGTTTGTCATCACCTGCATGTATATAAACTCCAACATGGC
AAGCGAGGCGAAGAATATACTGTACGCTATAAAATGAAGCAACATATTAA
AGATTTAAATGTGAACATTAAGAAGATGTTGAAATTACTTGAATATTTAC
CTAAAACTGAAGTGGTTGCTAAAATCAAGCGTGAAGTTTGGTTGAAGCAA
ATCAACTTTACATTCAAAACGATACAATCTCTgtgaaatgaatatttttg
aatgaaaaaagggAAAGCGATCGATCTTCTTGGAAAATTTAGACTGTAGT
ATTTGTGTTATTAAAGAACAATAACGATATTCTAATCCATacatattatt
tttaaaataaatatttactaaaaaacaaacaaaataattaaCCATTTATG
TTCATTGCCATACCCATTGCTGTAAGATAAAGGATTTTCACCGGAGCCAA
ATTTTAAGGTAGGCAATCCTTTAAAAATGGTTAAAGTACTCACACTGAGA
CAATATTTTAATGAGAGCTCAATTCTTTTGTACTGATTTCAAAGGTAGAA
CTTTTCGCCACATCTTAACCATCAATTATAGTGCTAAAACTTAACGGAAA
AAATCAACACAATCGCCATGATCAGTTAATTCATAAATGTATGGGAAGAA
GAATTCAAGATGTAAAATTAACGAAAGCTTTCCACCGTGAATTCATCTAA
CCCCCTTCCTTTATTTAGGACATGAGATAaacaaaattcaatttcatatt
tATTTTCGTGTAATGTGAAATGTCGAGCATCGAAGAATGCAAATCTCTAC
TTTAAAAGCAAAGGCATTTCTGCAACATTATACGGTAGCGGGTTGACATC
ATTTAGTCTTAGATTCCAGTTCGTCACGTGATTTCATCACCAGGAAAGAT
TCATGCATCAAGTATAAAAgcttttcaaaagttatgaatcTCTTGCTATG
AAAGATTCCTGCGtattagagctttttaagacTGATAGTTCTATGACTTT
TTATCCTCGTGTTAAAATGGTATTTTTCATCCACCAATCTGATCATATCA
CGTCTACGCACATGTGCATCTTCAACAACGAAAACCACAAGTGGTAATCC
AATAAAGCAATTTAATAAACTTATTTGACAGCCGAATCAGACATGTCTTG
TGAATTCTCGTCCTCCGTATCAAGTATTCTAGAAGCTTGACGCTTACCTT
TACTCTGAGTTCCCTTTTTCCCGCTGCGTTTACCTCGGGAAGTGTTTTGT
CCACCGCGCGAACGTTGTTTCTCGATTGGTTTTTCTAAAAACGTAACGAA
TAGTTAGTTAGCTGATAAAAGAACTTTATAATTCCACCAATATTCCTCAT
AAAAAAATCGTATAGAAAGATTTGGAACGAAAATCAAGCCAGGGCGATTC
CTGAAAACCGTTATGTCATCCATATAGATTTTACTACCT
Run BLAST on NCBI

transcript from alignment at scaffold_220:129977..135179-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052831 ID=TCONS_00052831|Name=TCONS_00052831|organism=Clytia hemisphaerica|type=transcript|length=5203bp|location=Sequence derived from alignment at scaffold_220:129977..135179- (Clytia hemisphaerica)
AACAGGTCAAATTAATTCAAAATGAGACTACTCCTTGGAATAAATATTGT
GCTGACGACAGCAATCTTTGTTGATGCTTATACGCAATACACAGTCGAGA
AAATGAAAAACAAATGCATCAAAGTGACTTCCAAAGGATCCAAATGTCTG
AATTCGTTGAATGGAAATGTCATATGTATGGTAGAATTGACTGGGTCAAG
AAAAGTTCTTCAAAAATGTGAGAATAAACCTATCAGGACTATTACGATCA
TTTGTTGTCCAGAAGGTGTATATTATCAACCTACAGTGTCGACGGTAGAA
CAACGAACAACCGAGGTAACCGCAACAACAAAACATATGACAAAAACGAC
TTCAATGTCCATAATAAAACATTCTGAGAAAGATTTTACTAAAAAGGCGA
AAACCACTACAATATACCAAACTCTGAATAAAAAATCTACAGCTTCAAGG
CCTACGATTGGCTCTGCGACGCCATTAACAACGACTGTTTGGAATAAAAC
TTCAACTGAGGCAACTATCTCAAATAAACAAGAGCTCAACCCTGAAACGA
CAGTAGCAACCCAATCATGCAATTTGAAACAAGCTTTAAAGGAATTTAGA
AGCAAGATGCCTTTGAAACAAAACAAATGCAAAGACTTCAAGTCTTACAA
GCAAGAGCTGGATGGTTTATGGAGCATGCATGATGCGAATTTAGACATTA
TCAAAAATCAGATGAGAGATGAAAAGAAAAGAATTGATGCATTGATTGGA
AAGAACAAAATCTACAAAGTTGATCTGAAGAAAATGAACCGTAAGTGAAA
CAATGAATTTAAGTCCTGTTCAAAATCCTTTTCAATCAAATTTTAATATG
GGTGGGGGTGGGGGCATACAGTCAACTCTCGAATTAGAGATATGTAACCA
TAGGTCAAAAGCACATGAAAAGTATACAACATATACCCCAAGTATTCGAA
TTTGTCTTATTTGTTTAGAGAATTGCTAACGATTTTAAGTTAAGGGTGGG
TCAAAAGGAAAAAGGGAAATAGAGGAAAAATCACATAACAAGATGTTTGA
GAATCTGACTACATTATTTAGTAGCGTGGACAGTAGGGGCGCAAAATTTG
TGTAGGAAAGCAGATTTTTATGACAAAGCAATCATATTTTTATATCATGA
ATATATCATTACTTTGTCATAAAAATCTGCTCTCCTACACAGATTTTGCA
CTCTTCTTATCTACGCTACTGAATTCCTTGATTTTTCAGGTTCCTTAGAG
ATTTGGAAAGCATCGTTAAAAGCATTCGAGGAAGAACACTACCATGGATT
AGTGAGAATCAGTTCAAAGTATCATAACTGCATTTTCATCAAACTCATGA
TCCAAAAACGTGATATTATGATGAAATTCATTGATTGGGTACAAAGTTCA
TCAGATCCTGATATGACAATCGTTTACATGATTGCCAAAGATCTCCAGAG
CTTCGAAGATGATTATAAACAACAACAGGCAAGGATTTTCAAGCATTTTG
AGTTTTTGTCACCAAAATTACGAAGAGTAGCTTTGAGGCAGTTGGAGAAT
CACCATATCGCATTGGAGAGTGTTCAATTGGCAAAATGTGTCGATAGTCA
ACAACATACAGGATTTAGTGGACCAAAAGGTGTAGCTTTGGCAGATGTCT
TGTCGAAACTGGTAAGATGTTTTCTTTGTCCCATTCTTTACAGTTTATAG
ATATCTTTATACTCAGTTGGTATATTACGTTAACTTAACGTCCATGTAAC
GCTATATATAACACACAAAAGCGATAATACAAATTTTTTTTTTGCTACTA
CAGAATGCAACCAAAGAATCTGACAAACACCAACACGAAGACATACAGAA
TGAATTGGAAAATTTCTTAGTGAGTGTTCTCATATATTTGATCCGTAGGA
TTGGGAAAAAGGTTATTTCACAGTTAAAATATTAATTAATAAACATGAGA
TATGTGTCATGTTTTTTTATCTATTAAAGAATTTGAAAGAAGAGATCAAA
TTTGGGTAATTTATATTAGACCATGAATGGGTTCTTGTATATTGCTTTTG
GGACATTTAATTTTAATTTCAAACTATTCTAATTTCAGTCCAGCGAAAAG
CTAAAATGGATCAAAGCTTCGATTGAAACAGACGAGGCAATGACATCATC
AGTTGCATCAGGTGAAGATTCAAATAGTCATTCAAACGGAAGTGGCGGTG
GCGAATATAGCGGAGATAATAGTGATACTGAATCTTCGGGAGATAATAAA
GAAGGAAGTGGGGATGTTATGGTGGAAAATAATGACGATGAAGATGCTAT
GAGACATGTTTCGAAACCGACACAAACAACCTCGAGACCAAGAAATACAA
GGTATATAAATTAATATTGTACATTGGTAGTGCGGAGGTTTCGTTCACAG
AATTGCAAATGACTGTGTTCAAATCCCAAGGGAAGTATGACGCTAGACAT
TCTCCTTTCACTGATAAGGTAAAAATAAAATTTTCTAGAATACACAAGAC
ATTTTTCTCACATTCGTAGAGTTCCACAACGTCTATTGACATGGTTTGTT
GCATAACAAAGCTTTTGTGAACTGATTTTTACACCGTCTACAAAAGACCA
ATACTTTAGGATCTTTAAAAATATCGAAAAATATTTAACTTTTCAAATTT
AGACCTCCAGATATTAAAAAGAGTCAAAAATCAAAAATGACGACAACCGA
GAAATATCGACCGAGACTTTTACCGACAACCGACGTACCAAGTCAAGAGA
ATCGGTTAGAACTCGCCATCAAACGATTATTAAACGAATATCCGAGCGAA
AAGAATGGTTGTGACGAGAAAACAATCGATAGGAGTGAGGAAGAATCAAG
AATGGCTTTTTCAAGCGAAACAGCTCTTGTTGTCCAGAGATGGGATGAAG
CACAAAAGAAATATTCAAAAATGAAATTAAACGATTATCGAAAAGCTGAA
CGATTTTTATTGAGTAGGTTCAGAAGAGATTACAAAGTTATTAAATATTT
GAATTTGGAATTCTCACTTTTGCAATAAGTTCCGCACAGCAATTAAAAAC
GAGAACAATGTCCTTTTCATGAGTAGTTTACTAAGGAAACTGATTCTTTA
TTAAACGTCAATTACCATACTTACGTCTAACTGTCCAAGTCCAATCTGAT
TGGTTGAATGTCAAAATTATAATATAATTGAGTCAATCAGTGCTCAGAAA
AGCGTTTGATTGTAGAGCGTACTTTTGGATAATTAGCCCATAATTAGCCG
TAAGTACAAATCTTTTTCAGAAAAAATTTGAATATGAGGGGTGGAGGATA
TAACATTTTTTAGAGATTTACCCCCGGACATTGTGAAATTTGACTCCCCG
GACAGGGTAAATTTTGTAGATTTTCACCACCCCACGGACACTATATCCTC
CTCCCCACGGACACTATATCCTCCTCCCCCCATGTACGGACCTCCTCCCC
CCATGTACGAACATTTTCTGGCCCAATGTGTCTAAAAATCCCTTCCATCT
ACTCAAAAACAAAACTTGGGAAATTCTAGTCAATGGCTTTAAATTGCTCT
TATCTTCTTTTTGTAGAAGCATTAGGGGCTGTTACAAAATCCATGAACAA
TTTGAAACGAAGCGAACAAACAAGCGATGAAGAGAACAGAAGAAACCGAG
CGGAGTGCATCAATAGACAAATTTTGAAAGACCAACGTGACGCGTTAGTG
GATTACACTATCGAGATCCAAAAACCGAAACTGAGTTTAACAAAAATCGT
TAAGCAATTGAAACGTTTTATCGACGTTTGTCATCACCTGCATGTATATA
AACTCCAACATGGCAAGCGAGGCGAAGAATATACTGTACGCTATAAAATG
AAGCAACATATTAAAGATTTAAATGTGAACATTAAGAAGATGTTGAAATT
ACTTGAATATTTACCTAAAACTGAAGTGGTTGCTAAAATCAAGCGTGAAG
TTTGGTTGAAGCAAATCAACTTTACATTCAAAACGATACAATCTCTGTGA
AATGAATATTTTTGAATGAAAAAAGGGAAAGCGATCGATCTTCTTGGAAA
ATTTAGACTGTAGTATTTGTGTTATTAAAGAACAATAACGATATTCTAAT
CCATACATATTATTTTTAAAATAAATATTTACTAAAAAACAAACAAAATA
ATTAACCATTTATGTTCATTGCCATACCCATTGCTGTAAGATAAAGGATT
TTCACCGGAGCCAAATTTTAAGGTAGGCAATCCTTTAAAAATGGTTAAAG
TACTCACACTGAGACAATATTTTAATGAGAGCTCAATTCTTTTGTACTGA
TTTCAAAGGTAGAACTTTTCGCCACATCTTAACCATCAATTATAGTGCTA
AAACTTAACGGAAAAAATCAACACAATCGCCATGATCAGTTAATTCATAA
ATGTATGGGAAGAAGAATTCAAGATGTAAAATTAACGAAAGCTTTCCACC
GTGAATTCATCTAACCCCCTTCCTTTATTTAGGACATGAGATAAACAAAA
TTCAATTTCATATTTATTTTCGTGTAATGTGAAATGTCGAGCATCGAAGA
ATGCAAATCTCTACTTTAAAAGCAAAGGCATTTCTGCAACATTATACGGT
AGCGGGTTGACATCATTTAGTCTTAGATTCCAGTTCGTCACGTGATTTCA
TCACCAGGAAAGATTCATGCATCAAGTATAAAAGCTTTTCAAAAGTTATG
AATCTCTTGCTATGAAAGATTCCTGCGTATTAGAGCTTTTTAAGACTGAT
AGTTCTATGACTTTTTATCCTCGTGTTAAAATGGTATTTTTCATCCACCA
ATCTGATCATATCACGTCTACGCACATGTGCATCTTCAACAACGAAAACC
ACAAGTGGTAATCCAATAAAGCAATTTAATAAACTTATTTGACAGCCGAA
TCAGACATGTCTTGTGAATTCTCGTCCTCCGTATCAAGTATTCTAGAAGC
TTGACGCTTACCTTTACTCTGAGTTCCCTTTTTCCCGCTGCGTTTACCTC
GGGAAGTGTTTTGTCCACCGCGCGAACGTTGTTTCTCGATTGGTTTTTCT
AAAAACGTAACGAATAGTTAGTTAGCTGATAAAAGAACTTTATAATTCCA
CCAATATTCCTCATAAAAAAATCGTATAGAAAGATTTGGAACGAAAATCA
AGCCAGGGCGATTCCTGAAAACCGTTATGTCATCCATATAGATTTTACTA
CCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033386XLOC_033386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052831-exon-scaffold_220-1575043694:134390..135179TCONS_00052831-exon-scaffold_220-1575043694:134390..135179Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1575043694:133519..133940TCONS_00052831-exon-scaffold_220-1575043694:133519..133940Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1575043694:133311..133376TCONS_00052831-exon-scaffold_220-1575043694:133311..133376Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1575043694:132829..133091TCONS_00052831-exon-scaffold_220-1575043694:132829..133091Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1575043694:132217..132527TCONS_00052831-exon-scaffold_220-1575043694:132217..132527Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1575043694:129977..131613TCONS_00052831-exon-scaffold_220-1575043694:129977..131613Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1510915933:134390..135179TCONS_00052831-exon-scaffold_220-1510915933:134390..135179Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1510915933:133519..133940TCONS_00052831-exon-scaffold_220-1510915933:133519..133940Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1510915933:133311..133376TCONS_00052831-exon-scaffold_220-1510915933:133311..133376Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1510915933:132829..133091TCONS_00052831-exon-scaffold_220-1510915933:132829..133091Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1510915933:132217..132527TCONS_00052831-exon-scaffold_220-1510915933:132217..132527Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1510915933:129977..131613TCONS_00052831-exon-scaffold_220-1510915933:129977..131613Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1491911889:134390..135179TCONS_00052831-exon-scaffold_220-1491911889:134390..135179Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1491911889:133519..133940TCONS_00052831-exon-scaffold_220-1491911889:133519..133940Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1491911889:133311..133376TCONS_00052831-exon-scaffold_220-1491911889:133311..133376Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1491911889:132829..133091TCONS_00052831-exon-scaffold_220-1491911889:132829..133091Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1491911889:132217..132527TCONS_00052831-exon-scaffold_220-1491911889:132217..132527Clytia hemisphaericaexon
TCONS_00052831-exon-scaffold_220-1491911889:129977..131613TCONS_00052831-exon-scaffold_220-1491911889:129977..131613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:129977..135179 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113689	0.243977	0	0	1.04175	0.165369	5.87059	6.64589	5.84236	3.30126	3.8795	5.48789	2.91556	4.79762	5.67331	6.39169	1.82497	1.3219	3.58788	6.00314	0.361524	0	0.733418	0.431864	0.259405	0.55911	0.000126908	0.38675	0.38483	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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