TCONS_00052843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052843
Unique NameTCONS_00052843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052843 ID=TCONS_00052843|Name=TCONS_00052843|organism=Clytia hemisphaerica|type=transcript|length=720bp
tcattttctaaaataattttactttcaaCTATGGCTGATGGAAACCAAGG
TGACCAACAATGCTCTTTTGGTATCAAGAAAATAGTTGATTGTAAGATTG
ATCAGaCTGGTAAACAACTGTACAAGGTGAAATGGGAGGCTACGTGGGAA
CCCGCAGACAGTCTCTCAAGTTGTCAGCATTTAATCGATGAATTCTGGGG
TTTTGTCAACAAAGCAAAAACAAATGAAGATATAGCACAGCAACACAGAA
AACGGATGAGGCTAGACCCATCTGCAGGACAAAATGGCACAGTTGGATTA
GGACCTCATCACATGTTAAGTGAAGATAGTAAAGATGAAGTACAAAGGCT
AATTGCAAGGACAAATGCTACTCAACCAGGAAGTCTAATGACTCCTAGTG
ACTTATTGAACACACAACAGAATCAAATGGGTGTGCCCAGGACTCCAACT
AGAGCACCTCAATCTCCATTCGCTCAAAATACACGAATGCCTTTCTCACA
AAGTCCTGGTCAGTTtaaccaacaacaacaacagtttGGATCGCCACAAA
CTGGCTTTCCAAATCAATCTCCCATGAGTTCCCCAAGCACACGTGGAAAA
GCACCTGGGTTTGGAAAACCTGCGTCCAATATCAAAAGTGAACAAGATGA
ATCTAAATCCAATGTTAAGAATATTGTGACGCAAAAAGCTGCTGAAGACT
TTGAAAATCCGTACGTCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_220:161736..170543-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052843 ID=TCONS_00052843|Name=TCONS_00052843|organism=Clytia hemisphaerica|type=transcript|length=8808bp|location=Sequence derived from alignment at scaffold_220:161736..170543- (Clytia hemisphaerica)
TCATTTTCTAAAATAATTTTACTTTCAACTATGGCTGATGGAAACCAAGG
TGACCAACAATGCTCTTTTGGTATCAAGAAAATAGTTGATTGTAAGATTG
ATCAGGTAATGCCCGAAATTTCTATTCAAGTTCTTTGGGGAATAAGTTTG
CAGATTCGTGTGTTTACATTCTTTTATGATTCCTCCCATCGGTGTCATGG
CACTAAAAAACCCATTGTATTTGCAAATGAATATGATATGAAATACTTTT
CTTCTGTCCATTCCATACAGACTTTATTTCCAACTGTTCAAAAAGCTCTA
AAATAGCATCTAATAGCATTACAGTAGAATATGATCCTTCAATGCAATGG
CCACAAAACTATAAAGTGCATTTTGTTTTGCGTGAGGTCTATTTCTATTA
TTTCTATTTCTATTTGATTGAGTTGCAGGAGGCTTTGAGGCCTTTTTTCG
CAACTATAAGACGCTTTCAATGAGCGCCCCGTCAGCACCTTGGACTGACT
ACCCAATTCCCCTCACATGGCATGGGTTGACCCGGGCGAAGGTTCATTCA
CTTGCCAAGTGAACCGCTGCGAGTGGGAATCGAACCTCAGTCGCCTGTGC
AGTAACCAAGGCCAGACGGTGTCAATCGAACGAATCGAACGCCGAATCAA
TCGAACGCAATCGAATATTACCCAGGATTTTCTGTTCGATTGCTTCGATT
ACGTTCGATTGCTTTGATAACGTTTGATTGCATTCGATGCGTTCGATTGA
TTCAATGGTATTAGATTTTATTCGCTTTGGTATGGTAATTAAGCGCTCGG
CCGCCCACGCTAAAAAGCTCAGAGTGATCCAATTTAATCTAATCGCAATC
AAACTCATCGAACATAATCGTAATCGAACGAAATCAAAGATTAATCCAAT
GTCAATTATCAATCAAACCAATCGAACATAGTCAACTATCAATCGAACCA
ATCTAACCTTACTCGAACTCAATCGAACACAATCGAATATTACCCAGGAA
TCGGCCTTTCGATTGAGATTCGATTACGTTTGACAATCGAATCGCAATTA
TTCGATCGTGTTCGATTACGTTTGATTGGTTCGATTGCAATTTTTGTTCG
AAGTTGTTCGATTGACACCGTCTGGCCAAGGTCAATGATCACTATACCAC
AACGCAACGCAACGCAACGCAAGGTCATGATAGGGACTTTTTCTAGCGTG
ATCACATGATTTGGAAATTTATATATATATCTGTGATTGGTTTTCCAAAG
TCAAAACGTGATTGTGATTTGTAGAATGGGCTATTCAAAAAAAAAAATGT
ATAGGGGTATTGAGGAACTTCACTAACCCCTCTGGAAATTTTGGATAACA
AACTATCCCCTGGAAATTAGGAGTCGACGCCCCTGGAAAGTGAAATTTTG
TGAAAAAGGGCCTGGAAAGTGACTATTGATGCCAGTTTAGGAGGAGAGAA
CCCCCTGGAAACCTTTAATAACCCCCTTGGAAAATCTGAAAATGACCAAA
AGCCCCTTGGAAAATCAAGGCTCAGTCTCCCCTGGAAAAGTTCGTCAATA
CCCCTACTATGGTTTAAAAATGGAATAGTCCAATTTTTGAGGCGCAATGA
TGCGTGATTCATGGACTTTTTGAAAAGGGATGCGTGATTGTCAAATTTAT
TTTGTTTATTAGCTAGGGGTCACTCGCATATTGATGCAACCTTTGGACCA
AAATCGGCATCAAAGGGCCTGGACCGGGGTCCCAAAATAATGTGCATTTT
GAAGAACAACCCAAAAGGAAACCTTTCATCCTCCTAGCATTTTAATTTCC
TACCTAGTGATTATTCTCAATCATCTTGGAAGAAATGCTACTTTGTTCAA
GAAAGCAAGTTTTTGCCTGATTTTGCATGTGTTTAGAAAAAAATTGGTAG
GCTCATATTTTTTAAATCACAAGCTTCAATTGGAAGCGTTGCGTAAAATA
ACAGCGCAACCCTGGGGAAACGCTGCGAAAAACCGCAACGTTGCGGATCT
ATGCAATTTGCCGAACTGAAAAGGAGCACGAGACAAACATCGGGCTGTTT
GTTTTGGTTAAGATTGTTCAATAAAAAAGCGAAGCAAACAAATATTTAGT
TACATAAAAGGCAGTTAGGGAAACCATCCAGGATGCTGCCATTCTATAAG
CCAGCAAAAACTAAATGACACTTGTAAACTTAACTTAACTTAACTACTTC
CCAAAGCTGGAGACCAAAACAAATTATCTTATGATTATGGTGGCTTTTTG
GATCTATTGTTAAGGCCATCTAAAATGGTGGAAAGAGTTGAGTGGGTGGT
AACGTCAAAACGCCCAATAAGATCTTCCAACAGAAGGAGAGTTTAGTTAC
CGCGTGAGTTACGTCATGCACTCCAACGCAGTGCACAACGAATGGTGTTT
CAGTGAATATTAATAATTATAAGAATATCTTATGTGCTTAACTTCAGTAA
ACCTCGAGTGCTTCAATAAAGATGAAGAAGGTAAGAAGATAAAAAATGCG
CTGGATAATTTTCATTGTAAAAGTTTGGTCAATCATTGCTGAAAGCTTGA
AAAAGTTTTTCCAATACAAAAAAAATTTCAGCCCATTAAAAGCAGTGTAC
TTATACTTACTTTGTTTGCTACATTGTCTAGACTAAAAAAAGTGAGAAAA
GACACAAACATACAGGGTTCGAATTATAAATTTTATGACTTATGAGCTTC
GCTATTTTTCCAGTGTTTGCAAAGCATTTTGAGTATTTTGCGATGTAGAT
TGGAAGAAAATGCGAAAGTATCTTCAATTCATTTCTCTAGAAAAGCGAAG
TTAGACTTAAAGTAAGAGATTATAGACAAAGCAAAGTGCAGTTTTGAAGT
AACGAGTAGATAAAGTAGATAAAGCAATAGATAAACAAGTGAATAAAGTT
GTTAGTTTATAAAGCGATAGATAAAGGAATGAATAAAGTAGCAAAGTGGC
AAGTAGATAAAGCAATGAATAAACGAGTGAAAAAGTAGTAGATTTGATAA
AAACAATAGATACGAGTGAATAAAGTAGCAAAGTAGCAAGTTGATAAAGC
AATAGATAAACAAGTGAATAAAGTAGCGAAGTGGCAAGTAGCTAAAGCAA
TAGATAAACGAGTGAATAAATTAGCAAAGTAGTGAGTTGATAAAGCAATA
GATAAACGAATGAATTTTCAAATGTGTTTATTAGATTTATGCTCAAAGTC
ACGCAAAAATGACAAAATACAACCAATAACATAAGGAAGATGATGGATTA
ATGATAAAAAAGTAAAATATTCTGAAATATTATATATATTTTTTTGTTTT
ATTATTTTCCAATCAAATAAATGTTGAAAATTTCTCTTAGAGAGATAACC
CCAGAGAAATAACTGACCCTGATTGAGTGAACCCCTAATTAGAAATTCTC
AACCCAATTTACTACTACGCTTACTGTGCTTGTATCTTGTCCCATACAGT
ATTCAGCAATTTTGAAACTTGGCAACTATGTTCTCCCGCTTAAAAAAATG
TCCTCGAAATTCTTTCTCCCGTATTTTCTATAATACACCTTTCCCATAAT
TTTAACTTTGGCTAGACTCTATCACTGGATACAATCACTAACTTTCTAAT
CAATGACCGATCTCTCAATAATCAAGGTGATAATAGAGCCTACTGTAAAA
TCCTGAGTGTTGATAATTGATCATTGATTGGTTTTTTCATCAATCTCAGA
GCCAATTGATGAAAATCAAAAAAAAAGATTACGTTTTTTTTTTTTAAGCA
TTGCACTTGTAAGCATATCTAGGCTCAGATATGAGGAAAAATTAAGCATA
CGGAAGCATTACTTGAGCCTACGAAAAGTGTTTTTTTCCTGATTTTGTTT
GTTTCTGTTGTTCTGTATTTATCATAATACTCCCCCCACTAGGTAGAGGA
CTGAATATACCCCCTATTCGCCTTTCTCTCCCCCCCCCATCTTCCTGGGG
GGGGGTGATCCCATGGAAAGCTAGAACAATTTCAATCTAAATTGATTTAC
AATTAAATAGAGGTTTTTGGGAAATAGTTCTCTGGTGTTTGGTATTGAAA
ATCAAGGCTAAAAATCAGATCATATTTCTAAAATCTACAAATTAAATTTT
TTTGGAAAAAAAGCTTCTAATTTTTTGGGTAGCAGCTGTAAATGATAGAA
CTTTATTTGGCTTGCAGCTGAAACAACTAAATAATCACATTAAATAATTC
AATCAAATTGTAAGTCCACGATAATTTAGTTAAAACGTTTTAATTAATAC
ACCATTACTTATTACTGCTTATTATATTCTTTTTGGACCTACCCCGGTGG
AGGTCCTATAAATTAACCTTTGTCCGTCCGTCCGTTAGTTACCAGCTTTT
CTCGAGATTGGCTCATTAGTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAATTTTGGGGTATATTTCAGCTAAAAAAAC
GTGACCTAACTTATAAACGTGTTAAATGCATAATCCAGGTAGGTCCATCA
AAGTATCACTTGTTATTTTTTATTTTACTAGACTGGTAAACAACTGTACA
AGGTGAAATGGGAGGCTACGTGGGAACCCGCAGACAGTCTCTCAAGTTGT
CAGCATTTAATCGATGAATTCTGGGGTTTTGTCAACAAAGCAAAAACAAA
TGAAGATATAGCACAGCAACACAGAAAACGGGTATGTTTTAGTTCTCTAG
TTTTTCCAACACCTTTCCTCCTACCAGTTTATTCCATTTTAGTGTCTTGT
CATTGAACTTATGGTCCTCTTGAATCAAATGAAATAATTGTACAACAGTT
TTTTTCATGAAGAAACAATATAAAATTTTCCTGAAGTTTGTTTTGTAACA
TTACCATTAAAAATTACAAACTATATTTTTGTTTAAAGATGAGGCTAGAC
CCATCTGCAGGACAAAATGGCACAGTTGGATTAGGACCTCATCACATGTT
AAGTGAAGATAGTAAAGATGAAGTACAAAGGCTAATTGCAAGGACAAATG
CTACTCAACCAGGAAGTCTAATGACTCCTAGTGACTTATTGAACACACAA
CAGGTAAGAATAAAAATATCTCCTTTTTATACAGAAGCTATCTTGAGTTA
ACTTTCTTAGAGGCATATGTTGATAGTGAAGGTAAAGGATACTTCAACAA
AATAATTTTAGAAAATTAGCAAAAAAACTTTTTGTGAGTATATGAAAAAA
TACTGATTTAATAGCATCAATATTTCTGTTACAGAATCAAATGGGTGTGC
CCAGGACTCCAACTAGAGCACCTCAATCTCCATTCGCTCAAAATACACGA
ATGCCTTTCTCACAAAGTCCTGGTCAGTTTAACCAACAACAACAACAGTT
TGGATCGCCACAAACTGGCTTTCCAAATCAATCTCCCATGAGTTCCCCAA
GCACACGTGGAAAAGCACCTGGGTTTGGAAAACCTGCGTCCAATATCAAA
AGTGAACAAGATGAATCTGTAAGTCCCCATTTTATTCACTTTCGCATGGA
TTTTTTAGAGCATACAAGTAGTCTTTTGGCTTCTGATTATAATAGCTGTT
AAATGGTATGACCGTTATAGTCAGAACTTTCAGTGGAGTTTTAACAATAA
CAAAGAATCTTACCTTGCTAATTTTTGTATCTCCTAATAATAACTCTATT
TTAATGCATTAACCTAAAAGCTTTTGAACTTTTACCCCTATTAATTTTAG
TCTAATTTCGAACCCTAAGTTAGTTTTACTTGTGAATTGTTAGTATAAAA
AGTACCTTGCAGTCAACTCTCTCATAAGAGGTAAAGCTAGATCAGCAAAG
TTTCAAAACAACCTCCCTTTCGTTAGATTTTGAGCTTTTTACAAAGCTGC
TTAAAAATGATTTTGAATTCAAAACATTTTAGAAAATGCGCGAAAAAAAT
GCGTTTCAAAACCTCAGTTGATTTTTTGCATGCGTCTTGTGCATTTTGTG
CCCTCTTGTTGATGTCCAGTTGCAGATTGGTTGCTGGTGGTAGATGATTC
GATCTCTTGTGAGAGGGAGGACTGTGGAGGAGGTCTCCTAGCTTGTGAAG
TGCACAGTTCGAATCAGCAAGTCGTGGAAAAGGCATGTGAAACAAGAAAA
ATGTACTCTTTTCTAGAAGACAACCACAACTACACAAAAAGGAGGAGAAT
CTAAAATCTTGGAAGCATGGACCAACCCTTACGTAGAGTTGCAATTCCTC
TGTCGCATTTGCAAGAAACCCCAGGCATATAAGTATAGGCGTAACTGGAG
AAGGCACTATGAAAGCCACTCTGAGGAGAAACAATATGTTTGTGATATTT
GTGGTACTGGCTATAAAGCAAATTATTTACTCAAAAACCACATTGCTAAT
AAGCATCCAACAAGTGTGAATCCTGCTGATTCAGCAGAACAGGAGTTTAA
ACCACAGTCTGTTCAGGTCAAGCAAGAACAACAACCTGAATCAGACGAAC
CCTTTTATTTAAATTTGTAATATCTCCCTGTCTAACGAAAAAGTTAATAT
TTTCTATGCGTGTGTTACTATTAAAAGTATAAAGTATTATTCAGATATTT
ATGTAAATATGTTATGATGAAGTGTATATATTTTAAAACTATTTATTTTT
ATTTTTGTTATTAAACCTGTAGCTTATATATTATTGAAATATTTTTTTAC
TCTGAAAGTGGAGGTTGCTTTGTCACTGAAGCTGTCATTTTTTTCTATTT
TTTGCTAGAGAAGATATTTTGTTTATTTTTTATGTCCCATAGAAATCCAA
TGTTAAGAATATTGTGACGCAAAAAGCTGCTGAAGACTTTGAAAATCCGT
ACGTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033387XLOC_033387Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052843-exon-scaffold_220-1575043694:170439..170543TCONS_00052843-exon-scaffold_220-1575043694:170439..170543Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1575043694:163863..164012TCONS_00052843-exon-scaffold_220-1575043694:163863..164012Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1575043694:163491..163655TCONS_00052843-exon-scaffold_220-1575043694:163491..163655Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1575043694:163076..163309TCONS_00052843-exon-scaffold_220-1575043694:163076..163309Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1575043694:161736..161801TCONS_00052843-exon-scaffold_220-1575043694:161736..161801Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1510915933:170439..170543TCONS_00052843-exon-scaffold_220-1510915933:170439..170543Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1510915933:163863..164012TCONS_00052843-exon-scaffold_220-1510915933:163863..164012Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1510915933:163491..163655TCONS_00052843-exon-scaffold_220-1510915933:163491..163655Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1510915933:163076..163309TCONS_00052843-exon-scaffold_220-1510915933:163076..163309Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1510915933:161736..161801TCONS_00052843-exon-scaffold_220-1510915933:161736..161801Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1491911889:170439..170543TCONS_00052843-exon-scaffold_220-1491911889:170439..170543Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1491911889:163863..164012TCONS_00052843-exon-scaffold_220-1491911889:163863..164012Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1491911889:163491..163655TCONS_00052843-exon-scaffold_220-1491911889:163491..163655Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1491911889:163076..163309TCONS_00052843-exon-scaffold_220-1491911889:163076..163309Clytia hemisphaericaexon
TCONS_00052843-exon-scaffold_220-1491911889:161736..161801TCONS_00052843-exon-scaffold_220-1491911889:161736..161801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:161736..170543 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.10746	10.4153	12.9657	17.6225	48.3509	33.6574	11.8915	9.47676	13.9941	18.7835	19.1953	14.5319	16.7443	23.2747	19.889	20.2367	21.8832	17.9619	5.93398	9.77499	6.78575	3.63071	12.3334	18.677	20.3612	12.0325	4.59559	2.41467	13.5322	14.3736
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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