TCONS_00052877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052877
Unique NameTCONS_00052877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052877 ID=TCONS_00052877|Name=TCONS_00052877|organism=Clytia hemisphaerica|type=transcript|length=240bp
GATTGTGCATATTCTAGATGCGGTCTGACAAAGGTCGTATACAATGTGCA
AAATGCCGAAGGACTCAGGTCACTAAAGCTTCTTTGGATGACTCCTAAGA
TAGAATTCGCTTTATTGACttgttcagaaaaaaaaattcagagtCAATCA
AGATGCCTaggtctttttcttcaaaaacatgttcaagttCGTTACCTCCA
AGTTGGTATCTGTGTGCATGCTTAATATTGGCAAATTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_220:172625..172864

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052877 ID=TCONS_00052877|Name=TCONS_00052877|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at scaffold_220:172625..172864 (Clytia hemisphaerica)
GTAAATTTGCCAATATTAAGCATGCACACAGATACCAACTTGGAGGTAAC
GaacttgaacatgtttttgaagaaaaagacctAGGCATCTTGATTGactc
tgaatttttttttctgaacaaGTCAATAAAGCGAATTCTATCTTAGGAGT
CATCCAAAGAAGCTTTAGTGACCTGAGTCCTTCGGCATTTTGCACATTGT
ATACGACCTTTGTCAGACCGCATCTAGAATATGCACAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033405XLOC_033405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052877-exon-scaffold_220-1491911889:172625..172864TCONS_00052877-exon-scaffold_220-1491911889:172625..172864Clytia hemisphaericaexon
TCONS_00052877-exon-scaffold_220-1510915933:172625..172864TCONS_00052877-exon-scaffold_220-1510915933:172625..172864Clytia hemisphaericaexon
TCONS_00052877-exon-scaffold_220-1575043694:172625..172864TCONS_00052877-exon-scaffold_220-1575043694:172625..172864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:172625..172864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5154	0	0	1.99269	10.0949	6.46469	0.163569	5.10875	2.27384	2.03856	0	2.92834	8.77566	5.0623	1.53221	4.57442	2.70085	2.26769	5.42232	9.75532	5.70758	0	2.06258	0	10.3519	10.7386	3.69996	2.63247	0.998316	1.01713
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top