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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052881 ID=TCONS_00052881|Name=TCONS_00052881|organism=Clytia hemisphaerica|type=transcript|length=2379bp
CAGAGACTGTCATCACATGATAAAGATAGACATCTCTAGTTCATTTTTGA
TCTGATAATACCACGCAAAGTAATAAATACAATTTTCAAGGTATTTATAT
AAATGACATCTCTAGTTCCTAAAtgatcaaaataacaaaatagtCTAAAA
TGTTAGCGAAGAGAAAGTGATTGAAACCTGGAGACTCAACAGTTTATTGT
GGCATTTTCTACGAAACTTCATTTCAAAAGAATAAGAATGGCCGATGGTA
TGAGAAAATCTTGACGATTGTTTTAACACAAGCAACATTAACCACGCGTT
TGATAATGAATCAATCACCACGGTACTGTAACCGCTGTGGAGGCCGCTAC
TATGTGCCGGATTCATTAAGAGTAACAGCTTTAACGTTTAACTGCTACAG
CTGCAATCAAGAAGGTCTAGATTACCATAGAAGAtttccaaatttatctg
gttcAGCTTGGAGTGGACAAAGTAATGGTGGTCTTCGAAATGATTACCGA
CCAAAGATTGAAATCTGGTCTATTGAATCAACAGGAACGCCATACAAGAT
TTGTTCTTTTAAGACTGGTTCAAAGAGTAACATTTTAGACGTTAGAAATG
AGGTTTCCAGAATAACCGGAATCTCTCTTAAAGATCATAGACTGTAccat
tacaatagaaatctttcCACTGATCGAAGTCAAATCAAGGGAAATCTCTT
GAGTGATTGGGAGCCAGTACACAAGTATTACATCAATGTAGACAAGTTTA
TAATGGTGGTGGAACTCAAGGCCAAGATTAAAATCATGTCTATTAAAAAC
TCGGAAGAAATTTGCTCTTTTGAAATTGATAAGTCCAGCAAAATTAGACA
TGTTAAAGAAATGGTTGCTAAGGAAATTGACATACCTCCTGAAGATCAAA
GATTGTATCGGTACAATGAATATTGTAGAATGTTTAAAGCAGATTGGTCA
AAGGAGGAATACGATTCTGGTTTCGTCGCGATCGATCAAAGAAACCAAAA
CGTTTTGCCTTTAaatgattttgataaaataaagtATACCTTTGGAGTTA
CTAACAAATATATCATTTGTGTTGAACGAAATATTGTGGACGAGGATACA
TTGAGAATATGCCGTGATAGAGGTATTAGTGTTATTGATATGATACCTAT
CATGACTATCAACCCTCCATTTCCATCCATGGAAATCCTTACGGTGGAAG
TTCCCGAAGGATGTTCGATTTCAAATCTTAAATCGATTATTCATTTCAAA
ACCGGTCTATCGGTCAAAGAACAAATCTTGACAGATGGTCAAGAGAGAGT
TTTAGATGATTCGTATGACATTTTAAGTTCTACTGAGCATTGTTCAAAAG
ACTGGGAGCGAATGTATTTAACGTTGTTGAGTGGTGGCGATCATGAAACA
CAAAGAATATGTGACAGGCACAATATAAATTGTATATCGacatttaaatt
aaattttctgaCAAAAACCGTGGAGTTGAAGTTCCAAAAGTTTCGGTTAA
TAAGTGATGTGAAAATGcaaattcaaaaagaatttaACATAAGAGTTGGT
GATcaagttttgatttataaagGGAAAAAATTAACTGACAATCAAATTAC
TAGAAATGCGTTTCTGGAAAACAAATTGAACACATTGAAAGACGTATCTT
TAAACTTGGTTATTGACAAAAAGCCATTTCAAGTCAGAATATCACCTGAA
ATACAATATATATCAAGGTTTAACATCTCTATCAATGATTCTGACAGCAT
TGAAGTgttgaaacaaaaaatacaaGCAAAAACATCAATTCCTCTGCAAA
ATATACAGCTCAAAGACAATACTACACACGAGATTTTGTGTGATACGAAA
ATAGTCGAAGATTGTAAGTTTCTAGACAAATCAGTGATCACTTTGCAACA
AAAACTATTCATTAGACTTCACTTTGAGAAAGATAATCGAGTCGAGGAGA
GAGttgaaattttaccaaaatatgAACAACGAAGCAGATTGGATCTTTCG
GAAGAAATTCGCAAATCTTTCTTACCGAGGCAAATGAGCGTCAATGAAAT
TAAAGGTGAATTTACATTTGGTCATCCTACCATAAACAGAATCAATGAAA
TAGATTTTCGAATcaaaaaaactagaaaatgcTTGATAATGTAAATTAAT
GCTATATAGAAATATATATAATCGAGTGTGATTAATTACGTGCTTCTCGT
GCCGAAAAAATAATCTCATACGAAAGACATCCCTTAAATTTGTCTGTCaa
cagatgcagaaattttcatttcggGTCTAACTGAATTATTCAGAACCCGA
CTGACGATCAAAGGCCGACTCTCCTATGGGAAATTAGCTCCCTTCTTTAG
TGTTTAAGCGTGGACGAGCATTTTAGTTG Run BLAST on NCBI protein sequence of TCONS_00052881-protein >TCONS_00052881-protein ID=TCONS_00052881-protein|Name=TCONS_00052881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp
MNQSPRYCNRCGGRYYVPDSLRVTALTFNCYSCNQEGLDYHRRFPNLSGS
AWSGQSNGGLRNDYRPKIEIWSIESTGTPYKICSFKTGSKSNILDVRNEV
SRITGISLKDHRLYHYNRNLSTDRSQIKGNLLSDWEPVHKYYINVDKFIM
VVELKAKIKIMSIKNSEEICSFEIDKSSKIRHVKEMVAKEIDIPPEDQRL
YRYNEYCRMFKADWSKEEYDSGFVAIDQRNQNVLPLNDFDKIKYTFGVTN
KYIICVERNIVDEDTLRICRDRGISVIDMIPIMTINPPFPSMEILTVEVP
EGCSISNLKSIIHFKTGLSVKEQILTDGQERVLDDSYDILSSTEHCSKDW
ERMYLTLLSGGDHETQRICDRHNINCISTFKLNFLTKTVELKFQKFRLIS
DVKMQIQKEFNIRVGDQVLIYKGKKLTDNQITRNAFLENKLNTLKDVSLN
LVIDKKPFQVRISPEIQYISRFNISINDSDSIEVLKQKIQAKTSIPLQNI
QLKDNTTHEILCDTKIVEDCKFLDKSVITLQQKLFIRLHFEKDNRVEERV
EILPKYEQRSRLDLSEEIRKSFLPRQMSVNEIKGEFTFGHPTINRINEID
FRIKKTRKCLIM Run BLAST on NCBI transcript from alignment at scaffold_220:242870..245248 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052881 ID=TCONS_00052881|Name=TCONS_00052881|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_220:242870..245248 (Clytia hemisphaerica)
CAACTAAAATGCTCGTCCACGCTTAAACACTAAAGAAGGGAGCTAATTTC
CCATAGGAGAGTCGGCCTTTGATCGTCAGTCGGGTTCTGAATAATTCAGT
TAGACccgaaatgaaaatttctgcatctgttGACAGACAAATTTAAGGGA
TGTCTTTCGTATGAGATTATTTTTTCGGCACGAGAAGCACGTAATTAATC
ACACTCGATTATATATATTTCTATATAGCATTAATTTACATTATCAAgca
ttttctagtttttttgATTCGAAAATCTATTTCATTGATTCTGTTTATGG
TAGGATGACCAAATGTAAATTCACCTTTAATTTCATTGACGCTCATTTGC
CTCGGTAAGAAAGATTTGCGAATTTCTTCCGAAAGATCCAATCTGCTTCG
TTGTTcatattttggtaaaatttcaaCTCTCTCCTCGACTCGATTATCTT
TCTCAAAGTGAAGTCTAATGAATAGTTTTTGTTGCAAAGTGATCACTGAT
TTGTCTAGAAACTTACAATCTTCGACTATTTTCGTATCACACAAAATCTC
GTGTGTAGTATTGTCTTTGAGCTGTATATTTTGCAGAGGAATTGATGTTT
TTGCttgtattttttgtttcaacACTTCAATGCTGTCAGAATCATTGATA
GAGATGTTAAACCTTGATATATATTGTATTTCAGGTGATATTCTGACTTG
AAATGGCTTTTTGTCAATAACCAAGTTTAAAGATACGTCTTTCAATGTGT
TCAATTTGTTTTCCAGAAACGCATTTCTAGTAATTTGATTGTCAGTTAAT
TTTTTCCctttataaatcaaaacttgATCACCAACTCTTATGTtaaattc
tttttgaatttgCATTTTCACATCACTTATTAACCGAAACTTTTGGAACT
TCAACTCCACGGTTTTTGtcagaaaatttaatttaaatgtCGATATACAA
TTTATATTGTGCCTGTCACATATTCTTTGTGTTTCATGATCGCCACCACT
CAACAACGTTAAATACATTCGCTCCCAGTCTTTTGAACAATGCTCAGTAG
AACTTAAAATGTCATACGAATCATCTAAAACTCTCTCTTGACCATCTGTC
AAGATTTGTTCTTTGACCGATAGACCGGTTTTGAAATGAATAATCGATTT
AAGATTTGAAATCGAACATCCTTCGGGAACTTCCACCGTAAGGATTTCCA
TGGATGGAAATGGAGGGTTGATAGTCATGATAGGTATCATATCAATAACA
CTAATACCTCTATCACGGCATATTCTCAATGTATCCTCGTCCACAATATT
TCGTTCAACACAAATGATATATTTGTTAGTAACTCCAAAGGTATacttta
ttttatcaaaatcattTAAAGGCAAAACGTTTTGGTTTCTTTGATCGATC
GCGACGAAACCAGAATCGTATTCCTCCTTTGACCAATCTGCTTTAAACAT
TCTACAATATTCATTGTACCGATACAATCTTTGATCTTCAGGAGGTATGT
CAATTTCCTTAGCAACCATTTCTTTAACATGTCTAATTTTGCTGGACTTA
TCAATTTCAAAAGAGCAAATTTCTTCCGAGTTTTTAATAGACATGATTTT
AATCTTGGCCTTGAGTTCCACCACCATTATAAACTTGTCTACATTGATGT
AATACTTGTGTACTGGCTCCCAATCACTCAAGAGATTTCCCTTGATTTGA
CTTCGATCAGTGgaaagatttctattgtaatggTACAGTCTATGATCTTT
AAGAGAGATTCCGGTTATTCTGGAAACCTCATTTCTAACGTCTAAAATGT
TACTCTTTGAACCAGTCTTAAAAGAACAAATCTTGTATGGCGTTCCTGTT
GATTCAATAGACCAGATTTCAATCTTTGGTCGGTAATCATTTCGAAGACC
ACCATTACTTTGTCCACTCCAAGCTgaaccagataaatttggaaaTCTTC
TATGGTAATCTAGACCTTCTTGATTGCAGCTGTAGCAGTTAAACGTTAAA
GCTGTTACTCTTAATGAATCCGGCACATAGTAGCGGCCTCCACAGCGGTT
ACAGTACCGTGGTGATTGATTCATTATCAAACGCGTGGTTAATGTTGCTT
GTGTTAAAACAATCGTCAAGATTTTCTCATACCATCGGCCATTCTTATTC
TTTTGAAATGAAGTTTCGTAGAAAATGCCACAATAAACTGTTGAGTCTCC
AGGTTTCAATCACTTTCTCTTCGCTAACATTTTAGactattttgttattt
tgatcaTTTAGGAACTAGAGATGTCATTTATATAAATACCTTGAAAATTG
TATTTATTACTTTGCGTGGTATTATCAGATCAAAAATGAACTAGAGATGT
CTATCTTTATCATGTGATGACAGTCTCTG Coding sequence (CDS) from alignment at scaffold_220:242870..245248 >TCONS_00052881 ID=TCONS_00052881|Name=TCONS_00052881|organism=Clytia hemisphaerica|type=CDS|length=1839bp|location=Sequence derived from alignment at scaffold_220:242870..245248 (Clytia hemisphaerica)
TTACATTATCAAgcattttctagtttttttgATTCGAAAATCTATTTCAT
TGATTCTGTTTATGGTAGGATGACCAAATGTAAATTCACCTTTAATTTCA
TTGACGCTCATTTGCCTCGGTAAGAAAGATTTGCGAATTTCTTCCGAAAG
ATCCAATCTGCTTCGTTGTTcatattttggtaaaatttcaaCTCTCTCCT
CGACTCGATTATCTTTCTCAAAGTGAAGTCTAATGAATAGTTTTTGTTGC
AAAGTGATCACTGATTTGTCTAGAAACTTACAATCTTCGACTATTTTCGT
ATCACACAAAATCTCGTGTGTAGTATTGTCTTTGAGCTGTATATTTTGCA
GAGGAATTGATGTTTTTGCttgtattttttgtttcaacACTTCAATGCTG
TCAGAATCATTGATAGAGATGTTAAACCTTGATATATATTGTATTTCAGG
TGATATTCTGACTTGAAATGGCTTTTTGTCAATAACCAAGTTTAAAGATA
CGTCTTTCAATGTGTTCAATTTGTTTTCCAGAAACGCATTTCTAGTAATT
TGATTGTCAGTTAATTTTTTCCctttataaatcaaaacttgATCACCAAC
TCTTATGTtaaattctttttgaatttgCATTTTCACATCACTTATTAACC
GAAACTTTTGGAACTTCAACTCCACGGTTTTTGtcagaaaatttaattta
aatgtCGATATACAATTTATATTGTGCCTGTCACATATTCTTTGTGTTTC
ATGATCGCCACCACTCAACAACGTTAAATACATTCGCTCCCAGTCTTTTG
AACAATGCTCAGTAGAACTTAAAATGTCATACGAATCATCTAAAACTCTC
TCTTGACCATCTGTCAAGATTTGTTCTTTGACCGATAGACCGGTTTTGAA
ATGAATAATCGATTTAAGATTTGAAATCGAACATCCTTCGGGAACTTCCA
CCGTAAGGATTTCCATGGATGGAAATGGAGGGTTGATAGTCATGATAGGT
ATCATATCAATAACACTAATACCTCTATCACGGCATATTCTCAATGTATC
CTCGTCCACAATATTTCGTTCAACACAAATGATATATTTGTTAGTAACTC
CAAAGGTATactttattttatcaaaatcattTAAAGGCAAAACGTTTTGG
TTTCTTTGATCGATCGCGACGAAACCAGAATCGTATTCCTCCTTTGACCA
ATCTGCTTTAAACATTCTACAATATTCATTGTACCGATACAATCTTTGAT
CTTCAGGAGGTATGTCAATTTCCTTAGCAACCATTTCTTTAACATGTCTA
ATTTTGCTGGACTTATCAATTTCAAAAGAGCAAATTTCTTCCGAGTTTTT
AATAGACATGATTTTAATCTTGGCCTTGAGTTCCACCACCATTATAAACT
TGTCTACATTGATGTAATACTTGTGTACTGGCTCCCAATCACTCAAGAGA
TTTCCCTTGATTTGACTTCGATCAGTGgaaagatttctattgtaatggTA
CAGTCTATGATCTTTAAGAGAGATTCCGGTTATTCTGGAAACCTCATTTC
TAACGTCTAAAATGTTACTCTTTGAACCAGTCTTAAAAGAACAAATCTTG
TATGGCGTTCCTGTTGATTCAATAGACCAGATTTCAATCTTTGGTCGGTA
ATCATTTCGAAGACCACCATTACTTTGTCCACTCCAAGCTgaaccagata
aatttggaaaTCTTCTATGGTAATCTAGACCTTCTTGATTGCAGCTGTAG
CAGTTAAACGTTAAAGCTGTTACTCTTAATGAATCCGGCACATAGTAGCG
GCCTCCACAGCGGTTACAGTACCGTGGTGATTGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052881-exon-scaffold_220-1491911889:242870..245248 | TCONS_00052881-exon-scaffold_220-1491911889:242870..245248 | Clytia hemisphaerica | exon |
| TCONS_00052881-exon-scaffold_220-1510915933:242870..245248 | TCONS_00052881-exon-scaffold_220-1510915933:242870..245248 | Clytia hemisphaerica | exon |
| TCONS_00052881-exon-scaffold_220-1575043694:242870..245248 | TCONS_00052881-exon-scaffold_220-1575043694:242870..245248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:242870..245248 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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