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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052885 ID=TCONS_00052885|Name=TCONS_00052885|organism=Clytia hemisphaerica|type=transcript|length=1335bp
CTTTTTAAGGATGTGGATGATTCCAAAAGCTAATTTGTTTTATTCTGATT
TTCCAGCTGGCCAAAAAGAGTTTGTTGGGTTCCGGCAAACCTGGAGAAGC
TATCTGTGAAAAGGCTAAAGAATGTGGTGCAGATATGATTGTTATGGGTT
CTCGTGGACAAAACGCTGTCCGCCGTACATTTGTTGGAAGTGTTAGCGAT
TATGTTCTTCATCATGCTCATATCCCTATCACCATTGTCCCTAGAAAATA
GGTGACCAATTCTTTTTCATTGTTTATCAAAATATGATGACTAGATCAAG
GTTATAATACAAAGATCACAATATAATGATTATGCACCAATAGAGTGGAA
CGGTATTATGCCATAAAATTGAGACAATATTATTATAATGCACATTATTT
AAATGGGTACAATAACATTGGTACAATGGGTTTTGTATGGAttacatttt
ttagtttttaatgcactttatattttttgaagagCACTTCAGCTCCACAC
AATTTCATATTTATGCATGTATGCTcatcttttaatttttatgttatACA
TATGTTGTGCCTAAGTTTGAACTgtaatgttttttatattttttgtgatG
CAAAGATTTGTGTTCTTTCACAGGTAACGTGATAGGAAATTGCTATAAGG
TACATTTTATGTTTATTCAGACAAGACCTTGTTcatttctgtgttttttt
ttacttaaacaCTTTGAACtttgtattattatttttatttctctagaaaa
tattattttataacCAGTATATAGGCGGCATAGTAAAAGATAATAGAAGG
AAAATTTGATTGCTTAAAATGTGTATATCTGGTTAAGGTTCTGCTAGATA
CAAATTTATGAAAGTTCAATTTTAGGCGCTAAAGTCAATTACTTGAACCT
GAGACCGTGCATTTATGCACGAAAGGtttcaaaagtgaaattttgacaGT
CATCTGCCAAAATAATTTCAACCACATTGATGTGTCTCTTTCGTTTATTT
TTAAAAGGAACTTTTCCGCGATTTAAAAATAGACGAGGTTGAGACAAAAA
AGTTGTGTTGAAAATCACgtccttgaaaaatcaaatagGGAGGAATAAAA
AGACATTAAATTCTTTTGCAATCTGCTTATCATAAAAATTTAATCGTTAT
TTAAGATGATGAGCAATCTATAGAAAGTAAAGGTAAGGTCCAAAGTCTGA
GGCTTAAATTAATCTTcggtttttataattttttaataagaacatgaagc
ttcgatggccaaatattaagaacaggttaagaacatttggaGTTTTTCTA
CGCTGATGATAATTTtgcaaacatttttttataaa Run BLAST on NCBI transcript from alignment at scaffold_220:336963..338297 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052885 ID=TCONS_00052885|Name=TCONS_00052885|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at scaffold_220:336963..338297 (Clytia hemisphaerica)
tttataaaaaaatgtttgcaAAATTATCATCAGCGTAGAAAAACtccaaa
tgttcttaacctgttcttaatatttggccatcgaagcttcatgttcttat
taaaaaattataaaaaccgAAGATTAATTTAAGCCTCAGACTTTGGACCT
TACCTTTACTTTCTATAGATTGCTCATCATCTTAAATAACGATTAAATTT
TTATGATAAGCAGATTGCAAAAGAATTTAATGTCTTTTTATTCCTCCcta
tttgatttttcaaggacGTGATTTTCAACACAACTTTTTTGTCTCAACCT
CGTCTATTTTTAAATCGCGGAAAAGTTCCTTTTAAAAATAAACGAAAGAG
ACACATCAATGTGGTTGAAATTATTTTGGCAGATGACtgtcaaaatttca
cttttgaaaCCTTTCGTGCATAAATGCACGGTCTCAGGTTCAAGTAATTG
ACTTTAGCGCCTAAAATTGAACTTTCATAAATTTGTATCTAGCAGAACCT
TAACCAGATATACACATTTTAAGCAATCAAATTTTCCTTCTATTATCTTT
TACTATGCCGCCTATATACTGgttataaaataatattttctagagaaata
aaaataataatacaaaGTTCAAAGtgtttaagtaaaaaaaaacacagaaa
tgAACAAGGTCTTGTCTGAATAAACATAAAATGTACCTTATAGCAATTTC
CTATCACGTTACCTGTGAAAGAACACAAATCTTTGCatcacaaaaaatat
aaaaaacattacAGTTCAAACTTAGGCACAACATATGTataacataaaaa
ttaaaagatgAGCATACATGCATAAATATGAAATTGTGTGGAGCTGAAGT
GctcttcaaaaaatataaagtgcattaaaaactaaaaaatgtaaTCCATA
CAAAACCCATTGTACCAATGTTATTGTACCCATTTAAATAATGTGCATTA
TAATAATATTGTCTCAATTTTATGGCATAATACCGTTCCACTCTATTGGT
GCATAATCATTATATTGTGATCTTTGTATTATAACCTTGATCTAGTCATC
ATATTTTGATAAACAATGAAAAAGAATTGGTCACCTATTTTCTAGGGACA
ATGGTGATAGGGATATGAGCATGATGAAGAACATAATCGCTAACACTTCC
AACAAATGTACGGCGGACAGCGTTTTGTCCACGAGAACCCATAACAATCA
TATCTGCACCACATTCTTTAGCCTTTTCACAGATAGCTTCTCCAGGTTTG
CCGGAACCCAACAAACTCTTTTTGGCCAGCTGGAAAATCAGAATAAAACA
AATTAGCTTTTGGAATCATCCACATCCTTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052885-exon-scaffold_220-1491911889:336963..338297 | TCONS_00052885-exon-scaffold_220-1491911889:336963..338297 | Clytia hemisphaerica | exon |
| TCONS_00052885-exon-scaffold_220-1510915933:336963..338297 | TCONS_00052885-exon-scaffold_220-1510915933:336963..338297 | Clytia hemisphaerica | exon |
| TCONS_00052885-exon-scaffold_220-1575043694:336963..338297 | TCONS_00052885-exon-scaffold_220-1575043694:336963..338297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:336963..338297 . |
Blast
The following BLAST results are available for this feature:
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