|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052889 ID=TCONS_00052889|Name=TCONS_00052889|organism=Clytia hemisphaerica|type=transcript|length=998bp
GTCGCTAACAAGACGTGCTCtgtgtaccttatcggggaaaactttgtcgg
ggaaaattttcgtcacttgctggtagttggtaaacgcattaaggccggga
aaaattttcgtcggggtaaaatatttgtcacttggccaaaatttcgtcac
ttttccccgacgaagttttctcCGATAAGGTATTCTATAAAATCGTAAGT
TTATGTTTATAGAAACCACTGTTTATCAAATCAAACAGTTCCAAGACAGA
ATGGGCAGTTTCACAAAAACGTTAATCGATGATAATATTAATATGTGGGA
GTTTATGAACCAAAGTCGAGTTTTGCCGACATCATCGAATGTCAGTACAA
GAGATGCTATACAGCCTTATGTTTGGAAAGATTATCTTTTAATAATTCTA
CACGTTTTGGTGTTCATTGTTGGGACTATCGGCAACTTTATGGTTTGGAA
ATATTTCTCGTTGAAGACAGAATCGCTGAGTCAAGTTCAGAAATGGATTA
TATTTCTGGCTGGAATTGATTTCCTTATTTGTATAGCAGACCCTATCGTG
TATATCACTGAGATTTTAGCGCACGGTAGAGCAGATTTTGGTGGGAATTT
TGggtgcaaaatggtagctgTTACAGTGGTCTTACAGAGTTTATCTTTTA
GTATCGTTATGGTGATTAATATAGATCGATGTATCGCCATCTTGAAACCT
TATCGCGTCAAATGGAATAAATTCAAGACCAGACTGGTCCTGCTTTTAAT
AACGGTGTTATCTTTcatttcaaatcttcatttgtttatatcgctTCACG
TAAACGAACACGGAGTTTGCACAGCACACGCAGAACTTTTGTTATTCGGG
ATTCCGAATCTACTTTCATATGTTTTGAGAGATTTATTTTTCTTGGTCAT
TTTCTGCATAACCATACTGGCAATCCGTCATGAGCTTTCAAACTCTGGTG
ATCAAATCGCGAGTAGAGAATCAAGAAAACGTAGaatgaaagaaaatc Run BLAST on NCBI protein sequence of TCONS_00052889-protein >TCONS_00052889-protein ID=TCONS_00052889-protein|Name=TCONS_00052889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MFIETTVYQIKQFQDRMGSFTKTLIDDNINMWEFMNQSRVLPTSSNVSTR
DAIQPYVWKDYLLIILHVLVFIVGTIGNFMVWKYFSLKTESLSQVQKWII
FLAGIDFLICIADPIVYITEILAHGRADFGGNFGCKMVAVTVVLQSLSFS
IVMVINIDRCIAILKPYRVKWNKFKTRLVLLLITVLSFISNLHLFISLHV
NEHGVCTAHAELLLFGIPNLLSYVLRDLFFLVIFCITILAIRHELSNSGD
QIASRESRKRRMKEN Run BLAST on NCBI transcript from alignment at scaffold_220:449297..450294 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052889 ID=TCONS_00052889|Name=TCONS_00052889|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at scaffold_220:449297..450294 (Clytia hemisphaerica)
gattttctttcattCTACGTTTTCTTGATTCTCTACTCGCGATTTGATCA
CCAGAGTTTGAAAGCTCATGACGGATTGCCAGTATGGTTATGCAGAAAAT
GACCAAGAAAAATAAATCTCTCAAAACATATGAAAGTAGATTCGGAATCC
CGAATAACAAAAGTTCTGCGTGTGCTGTGCAAACTCCGTGTTCGTTTACG
TGAagcgatataaacaaatgaagatttgaaatgAAAGATAACACCGTTAT
TAAAAGCAGGACCAGTCTGGTCTTGAATTTATTCCATTTGACGCGATAAG
GTTTCAAGATGGCGATACATCGATCTATATTAATCACCATAACGATACTA
AAAGATAAACTCTGTAAGACCACTGTAAcagctaccattttgcaccCAAA
ATTCCCACCAAAATCTGCTCTACCGTGCGCTAAAATCTCAGTGATATACA
CGATAGGGTCTGCTATACAAATAAGGAAATCAATTCCAGCCAGAAATATA
ATCCATTTCTGAACTTGACTCAGCGATTCTGTCTTCAACGAGAAATATTT
CCAAACCATAAAGTTGCCGATAGTCCCAACAATGAACACCAAAACGTGTA
GAATTATTAAAAGATAATCTTTCCAAACATAAGGCTGTATAGCATCTCTT
GTACTGACATTCGATGATGTCGGCAAAACTCGACTTTGGTTCATAAACTC
CCACATATTAATATTATCATCGATTAACGTTTTTGTGAAACTGCCCATTC
TGTCTTGGAACTGTTTGATTTGATAAACAGTGGTTTCTATAAACATAAAC
TTACGATTTTATAGAATACCTTATCGgagaaaacttcgtcggggaaaagt
gacgaaattttggccaagtgacaaatattttaccccgacgaaaatttttc
ccggccttaatgcgtttaccaactaccagcaagtgacgaaaattttcccc
gacaaagttttccccgataaggtacacaGAGCACGTCTTGTTAGCGAC Coding sequence (CDS) from alignment at scaffold_220:449297..450294 >TCONS_00052889 ID=TCONS_00052889|Name=TCONS_00052889|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_220:449297..450294 (Clytia hemisphaerica)
attttctttcattCTACGTTTTCTTGATTCTCTACTCGCGATTTGATCAC
CAGAGTTTGAAAGCTCATGACGGATTGCCAGTATGGTTATGCAGAAAATG
ACCAAGAAAAATAAATCTCTCAAAACATATGAAAGTAGATTCGGAATCCC
GAATAACAAAAGTTCTGCGTGTGCTGTGCAAACTCCGTGTTCGTTTACGT
GAagcgatataaacaaatgaagatttgaaatgAAAGATAACACCGTTATT
AAAAGCAGGACCAGTCTGGTCTTGAATTTATTCCATTTGACGCGATAAGG
TTTCAAGATGGCGATACATCGATCTATATTAATCACCATAACGATACTAA
AAGATAAACTCTGTAAGACCACTGTAAcagctaccattttgcaccCAAAA
TTCCCACCAAAATCTGCTCTACCGTGCGCTAAAATCTCAGTGATATACAC
GATAGGGTCTGCTATACAAATAAGGAAATCAATTCCAGCCAGAAATATAA
TCCATTTCTGAACTTGACTCAGCGATTCTGTCTTCAACGAGAAATATTTC
CAAACCATAAAGTTGCCGATAGTCCCAACAATGAACACCAAAACGTGTAG
AATTATTAAAAGATAATCTTTCCAAACATAAGGCTGTATAGCATCTCTTG
TACTGACATTCGATGATGTCGGCAAAACTCGACTTTGGTTCATAAACTCC
CACATATTAATATTATCATCGATTAACGTTTTTGTGAAACTGCCCATTCT
GTCTTGGAACTGTTTGATTTGATAAACAGTGGTTTCTATAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052889-exon-scaffold_220-1491911889:449297..450294 | TCONS_00052889-exon-scaffold_220-1491911889:449297..450294 | Clytia hemisphaerica | exon |
| TCONS_00052889-exon-scaffold_220-1510915933:449297..450294 | TCONS_00052889-exon-scaffold_220-1510915933:449297..450294 | Clytia hemisphaerica | exon |
| TCONS_00052889-exon-scaffold_220-1575043694:449297..450294 | TCONS_00052889-exon-scaffold_220-1575043694:449297..450294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:449297..450294 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
