TCONS_00052892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052892
Unique NameTCONS_00052892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052892 ID=TCONS_00052892|Name=TCONS_00052892|organism=Clytia hemisphaerica|type=transcript|length=435bp
ATGCTGGGCCGGCTCAGGATCAGTCACAGTCACTACTTACAACATTATCA
GGGTTTTCATGTGGTCTAAATATTCACTTCCAGGTTCTGGATGCTTTGCA
TTCAGTCAAAATAGCATGGCTACTCATTTTCTTGAATCTGGCGTTTCCAA
GAATTACCATTTCATGCTGTTTTTGATTCTTTTGCATGTTATAAAATAAT
CAACTCGTTAGCTTTTTTCAGTGCGATTTCCCACGAAATAAAGCTGGAAA
CTATtatgatgttttaaaaaaagaatctaTCAAATATTGATTACGAAACA
AACATAATCATGGGgcttttataaatgaaaaatttgactgACAACCTACC
TTGAACGTCAATCTTCATCAAGCCTTTTGAGTTTCAGACATTTGCACATC
CTTGAATCAGGCCCTGTACACACCGCCAAAAGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_220:489635..490069

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052892 ID=TCONS_00052892|Name=TCONS_00052892|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_220:489635..490069 (Clytia hemisphaerica)
AAACTTTTGGCGGTGTGTACAGGGCCTGATTCAAGGATGTGCAAATGTCT
GAAACTCAAAAGGCTTGATGAAGATTGACGTTCAAGGTAGGTTGTcagtc
aaatttttcatttataaaagcCCCATGATTATGTTTGTTTCGTAATCAAT
ATTTGAtagattctttttttaaaacatcataATAGTTTCCAGCTTTATTT
CGTGGGAAATCGCACTGAAAAAAGCTAACGAGTTGATTATTTTATAACAT
GCAAAAGAATCAAAAACAGCATGAAATGGTAATTCTTGGAAACGCCAGAT
TCAAGAAAATGAGTAGCCATGCTATTTTGACTGAATGCAAAGCATCCAGA
ACCTGGAAGTGAATATTTAGACCACATGAAAACCCTGATAATGTTGTAAG
TAGTGACTGTGACTGATCCTGAGCCGGCCCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033420XLOC_033420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052892-exon-scaffold_220-1491911889:489635..490069TCONS_00052892-exon-scaffold_220-1491911889:489635..490069Clytia hemisphaericaexon
TCONS_00052892-exon-scaffold_220-1510915933:489635..490069TCONS_00052892-exon-scaffold_220-1510915933:489635..490069Clytia hemisphaericaexon
TCONS_00052892-exon-scaffold_220-1575043694:489635..490069TCONS_00052892-exon-scaffold_220-1575043694:489635..490069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:489635..490069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25585	1.22465	2.31065	2.26061	0.211698	0.669146	2.01824	0.755781	0.396855	0.327713	2.2266	0.836389	0.417613	1.19266	0.623974	1.14792	0.942761	1.69102	0.834372	0.174622	0	0.222096	0.899958	2.78185	0.842719	0.300842	0	0.229723	0.696947	1.06512
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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