|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052907 ID=TCONS_00052907|Name=TCONS_00052907|organism=Clytia hemisphaerica|type=transcript|length=2183bp
gcgcaaCGCAAACTTTAAAGTACACTAAAAAATTACcttggtgttttaga
gtgaaTTCTTTTAGTGATTCTCAACAGTCCTATAAGTCTAATAttgtaaa
catttaaaaactgaaaaaattctgctttgttcaattttatttagaaatta
tgattttccgtcacggcgcaaCAGAATTTTAGACCCCAAAAAAACTCCAT
TGGACATCTGAAATGATTTAATTTCTTCAGTAACttcaaaattatcaata
tttaaaaacatttggtaAGGTAAACTACTTTGTAGCCTTTATATGCTCAT
TATGTTCATACATAATCAGACATAATGAACCTGCTGGAAAATTGCTCACC
TGGACCCCCGAAGAAGATCGACGTGTTGGTAGACCGAACATCACCCTGCG
ACAAATCCTTGAAGATGACACTGGACTCAGTGGCAAAGACCTCGTTACAG
CCATGTCCGATCGTGAAAAATGGAGAAAAGACTTTGTATACTTCACCTAA
CGGATGCATCAAGTACAAattcggactattatACTGTCGGAccagaaagt
gtcggactagtgacatgctgACGACCCCCCTGCTGCATGCCTGGACTGGA
ATCAATCGATTGGTTTATCGATTGTTTGTGGGAAGGGAAGGAAGAGAGTC
TGGATTAAAATACACTCAATGTCAGAAAGcctatttcaaatttaaattca
aaCACTTACATTAAATTTACCTGATCTGCTGATGGTTCTGgttttatttg
aatatttgtCGTACCTGGTAATTGCAAGTTCCATGcttttgatttaactt
tctCATCAACAGGTAAGAATTGTGATTTTGAATGTCTTTTTATTGAACTT
GACTGTAAGATGCTTGTAGGGGTAGTATATAGACATCCTGAtaacaaaat
acaaattttcaatgATGAGTTTGAGAAAAGAGTTcttgaaagaataaaaa
atgaagataagAAGGTTATTATTATGGGAGATTACAATATAAATTTAATG
AACTGTGAATCTCATCGTCACACAAGTAATTTCTTTGACAAGATGgtttc
atttaattttcttcCATACATAATCCAACCAACTAGATTTAATGGTAACT
CTCACACTCTTATcgacaatattttttataacgACATTTCCAATGAATGT
ATCAGTGGTAACTTAATTCCTCATATCACTGATCATTTGCCAAATTTCCT
TTTTGTACCTCATTCTGATAATAAAAtaacacaaaaatttaaaaaaatat
caaaaagagaCTTCTCTGATTTTGATATCTTACGCTTTAGGgaagatctt
tcaaatattGACTTCACCAACAAATTCCTTCAGATGGAAGATGCTAACCT
AATGTATGAATTTTTTCATAAAGGCATGAATCTTTTATTTGACATACATG
CCCCATTTAAActattgacaaaaaatcaaagaagaaaagaaaaaaacccc
tGGATGACCAATAAGATTCTtaacaaaataaatataaaagatGCACTATA
TGGGCAGTTTATGAAAGACAAAGACcaacaaattttcaaagaatatcaTG
AGATCTTGCGAGAGTTAAACAAAGACATACGTAAAGCAAAATTCATCTAC
CTCAAAAACAAATTTACACAATCAAAGaatgacatcaaaaaattttggaa
aaatatcaaCACCTTCCTTGGTAGAAATAAGACCAATCATTACCCAAGAA
CTATGACTCATCAAGATAAAACATTTACTGACTCTCATCAGATTAGTGAA
GCTTTTAATAAATACTTTTCAGAGGTTGCTCCAAATCTTctcaaaaaaat
tcctaaaaacaCAACTCTTAAACACAAAAACTACCTTACTAGGATGCAGT
ATAACAACTCTAGCTTCTTTTTCCAACGAACCAATAGGTATGAAGTCTTA
ACACACCTTAACAACATAAACAGTAATAAAGCCAAGGATATTTATGATTT
CCCTACACGGATTATCAAAGGTATTGCTGATCTACTAGCTGATCCTCTTG
CTATTATGATAAACAACTCCCTATCCACAGGTGTTTTCCCTGAACTTTTA
AAACATGCTAAAGTAACTCCTCTCTTCAAAAGTGGACTTAGAAATGATAT
AAAAAACTACAGGCCAATATCTGTTCTCCCAATTTTTGACaagatctttg
aaaaaattgttcATGAAAGAATAACTAAATTTC Run BLAST on NCBI transcript from alignment at scaffold_222:289914..292810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052907 ID=TCONS_00052907|Name=TCONS_00052907|organism=Clytia hemisphaerica|type=transcript|length=2897bp|location=Sequence derived from alignment at scaffold_222:289914..292810+ (Clytia hemisphaerica)
gcgcaaCGCAAACTTTAAAGTACACTAAAAAATTACcttggtgttttaga
gtgaaTTCTTTTAGTGATTCTCAACAGTCCTATAAGTCTAATAttgtaaa
catttaaaaactgaaaaaattctgctttgttcaattttatttagaaatta
tgattttccgtcacggcgcaaCAGAATTTTAGACCCCAAAAAAACTCCAT
TGGACATCTGAAATGATTTAATTTCTTCAGTAACttcaaaattatcaata
tttaaaaacatttggtaAGGTAAACTACTTTGTAGCCTTTATATGCTCAT
TATGTTCATACATAATCAGACATAATGAACCTGCTGGAAAATTGCTCACC
TGGACCCCCGAAGAAGATCGACGTGTTGGTAGACCGAACATCACCCTGCG
ACAAATCCTTGAAGATGACACTGGACTCAGTGGCAAAGACCTCGTTACAG
CCATGTCCGATCGTGAAAAATGGAGAAAAGACTTTGTATACTTCACCTAA
CGGATGCATCAAGTACAAGTAATATGctcattttgtaaaaatcttaattt
ttgtgAGCTTTCCAGggattttagcctggaaatcgGGAATCTGGTCATAA
CTTTTCAATGGAGCATGTTCCTGCTCTGATTTTTTCACATATTGCTCATG
AAATGATATTCTTTATgtctaaataaaattttttgacattttgaaaactt
cattttttgccatttttcagattttttgggacgagctttttgcttattgc
tacgtcttgtgctttcaaatggtttatttcttcgtcctgccttttcatta
tattctcacaggctttgatttcgtttttgaatccttcaatttttgatgtt
tcatttgaattatacctttccattacctgtggtgcgattttggtacagtt
ttgACACTGGAAACTTCTTGATTTGTATGACAAGCATATCTGCATCTGGT
AAAGTGGCAGTTCTGAACAAAGATAATGGACTAAACGGTGGCACTTCCTG
CATTGTAGGGTATCTTTTAGtgcgttttcttcatttatgatgcactttGA
CAGGCTGCAAAAGTCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAAAGTCgtttattgatggtgatttttgattattttct
tgaattttttccgccatctttgtgcatttttcagacgacaaccgttcagt
tttgtatttgacgtcaacaatttattttatagattcggactattatACTG
TCGGAccagaaagtgtcggactagtgacatgctgACGACCCCCCTGCTGC
ATGCCTGGACTGGAATCAATCGATTGGTTTATCGATTGTTTGTGGGAAGG
GAAGGAAGAGAGTCTGGATTAAAATACACTCAATGTCAGAAAGcctattt
caaatttaaattcaaaCACTTACATTAAATTTACCTGATCTGCTGATGGT
TCTGgttttatttgaatatttgtCGTACCTGGTAATTGCAAGTTCCATGc
ttttgatttaactttctCATCAACAGGTAAGAATTGTGATTTTGAATGTC
TTTTTATTGAACTTGACTGTAAGATGCTTGTAGGGGTAGTATATAGACAT
CCTGAtaacaaaatacaaattttcaatgATGAGTTTGAGAAAAGAGTTct
tgaaagaataaaaaatgaagataagAAGGTTATTATTATGGGAGATTACA
ATATAAATTTAATGAACTGTGAATCTCATCGTCACACAAGTAATTTCTTT
GACAAGATGgtttcatttaattttcttcCATACATAATCCAACCAACTAG
ATTTAATGGTAACTCTCACACTCTTATcgacaatattttttataacgACA
TTTCCAATGAATGTATCAGTGGTAACTTAATTCCTCATATCACTGATCAT
TTGCCAAATTTCCTTTTTGTACCTCATTCTGATAATAAAAtaacacaaaa
atttaaaaaaatatcaaaaagagaCTTCTCTGATTTTGATATCTTACGCT
TTAGGgaagatctttcaaatattGACTTCACCAACAAATTCCTTCAGATG
GAAGATGCTAACCTAATGTATGAATTTTTTCATAAAGGCATGAATCTTTT
ATTTGACATACATGCCCCATTTAAActattgacaaaaaatcaaagaagaa
aagaaaaaaacccctGGATGACCAATAAGATTCTtaacaaaataaatata
aaagatGCACTATATGGGCAGTTTATGAAAGACAAAGACcaacaaatttt
caaagaatatcaTGAGATCTTGCGAGAGTTAAACAAAGACATACGTAAAG
CAAAATTCATCTACCTCAAAAACAAATTTACACAATCAAAGaatgacatc
aaaaaattttggaaaaatatcaaCACCTTCCTTGGTAGAAATAAGACCAA
TCATTACCCAAGAACTATGACTCATCAAGATAAAACATTTACTGACTCTC
ATCAGATTAGTGAAGCTTTTAATAAATACTTTTCAGAGGTTGCTCCAAAT
CTTctcaaaaaaattcctaaaaacaCAACTCTTAAACACAAAAACTACCT
TACTAGGATGCAGTATAACAACTCTAGCTTCTTTTTCCAACGAACCAATA
GGTATGAAGTCTTAACACACCTTAACAACATAAACAGTAATAAAGCCAAG
GATATTTATGATTTCCCTACACGGATTATCAAAGGTATTGCTGATCTACT
AGCTGATCCTCTTGCTATTATGATAAACAACTCCCTATCCACAGGTGTTT
TCCCTGAACTTTTAAAACATGCTAAAGTAACTCCTCTCTTCAAAAGTGGA
CTTAGAAATGATATAAAAAACTACAGGCCAATATCTGTTCTCCCAATTTT
TGACaagatctttgaaaaaattgttcATGAAAGAATAACTAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052907-exon-scaffold_222-1491911889:289914..290431 | TCONS_00052907-exon-scaffold_222-1491911889:289914..290431 | Clytia hemisphaerica | exon |
| TCONS_00052907-exon-scaffold_222-1510915933:289914..290431 | TCONS_00052907-exon-scaffold_222-1510915933:289914..290431 | Clytia hemisphaerica | exon |
| TCONS_00052907-exon-scaffold_222-1575043694:289914..290431 | TCONS_00052907-exon-scaffold_222-1575043694:289914..290431 | Clytia hemisphaerica | exon |
| TCONS_00052907-exon-scaffold_222-1491911889:291146..292810 | TCONS_00052907-exon-scaffold_222-1491911889:291146..292810 | Clytia hemisphaerica | exon |
| TCONS_00052907-exon-scaffold_222-1510915933:291146..292810 | TCONS_00052907-exon-scaffold_222-1510915933:291146..292810 | Clytia hemisphaerica | exon |
| TCONS_00052907-exon-scaffold_222-1575043694:291146..292810 | TCONS_00052907-exon-scaffold_222-1575043694:291146..292810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:289914..292810 + |
Blast
The following BLAST results are available for this feature:
|
