TCONS_00052926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052926
Unique NameTCONS_00052926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052926 ID=TCONS_00052926|Name=TCONS_00052926|organism=Clytia hemisphaerica|type=transcript|length=2014bp
CGCGGGCCCTGATCCATCTTTTCTTTAGTCAAGATTATGCCCTGTATACC
CCCAGGGCAGGGCGCAAGGCTGGCTCAAATTGTTTTGCTGAGGCTACTGG
GGATATTAAAAGAAGTAAAGGCGGATGAGGGGTGGTTGGGCGGTGAATAG
GATACATATATTTTGATCTGGAAACCGTCCTTCTCTAATTACTTCAATAG
AAACCAGTTGTTAATTTTGACCGCGCGTGTTTTAAAATCCTTTGTTGTGG
TGTCTCAGCTACCAATCAACGTCTGATCTAACTACACAAATCGCTGTTTG
GGAAATCAAGACAATCGAAAACAAATTAAAGACCAAAACATCTGGGTTTC
CTTGACGAGACCTCTAGCTACACACCTCTCACCAGCTCATTCTTTGCTCA
TTGTCTCTCCAAAATTGGAAAGACtcaacaaattattttttcattgaaag
ctTCACAAGACTGAGCAAAGATGTCTATGGATGAATTTAGAGCCAAAGTA
CTCGAGAGAGGAGCTTCATCTATTAAAGGAATTGGAAGgacaTTCCGAAT
CTATGACGATGATGGTAACAAATCATTGAATCTTGAAGAATTTTGTGAAG
GAGTCAAAGATTATGGATTAGACTTCGATGCTGATAAATGCTCAGAGCTC
TTCAAAACGTTTGATAAAGATGGAAGCGGAAGTCTCTCATTTGATGAATT
CCTCGTTGGACTCAGGGGTAATTTGAACGACGGTCGCATGAAGATTGTCA
AAGAAGCTTTCAAGAGGGCTGATCGCTCTGGTGACGGTGTTTTCGACGCC
AAAGATATGAAGAGGGTTTACAAAGTGACCGAACATCCCAAATACAAGAA
TGGAGAATGGGACGAGAATCAAGTGTTCACTGATTTCTTGAAATCTTTTG
AACCAGATGAGTCTAAGAGAGACGGAAAGGTCACTGAAGAGGAGTTTATC
AACTACTACGCTGGCGTCAGTGCTAACATCGACAATGATGCCTACTTCAA
TCTTATGCTCCGAAACGCCTGGAAAATCTAAGTGTGGATGCATAGATGGT
ATGGGTTTTGTTGTCTTGTATTATAACCAAgatcttttaagaaaaaaaac
ttgtttttaacaaCATACACCCTTcagaaaaccaaaaaaaaaaaacaatt
tattatttGTTAGATTTGTTAGCTTACTATTTCGAATAGGTTCTATAGCT
GTCAGATCGGTTAGAATTATTTAAATTTGATCTTCTAGCTAGTGTAAAAA
AACTACAGAACAGTTTTCTTTCGGAGGGAATTCTGAAATCAACGaccttt
ttaaaataaatttgaatttaaacgagcatctatttgatttttttaaaacc
gTACAAAAATCGTAAGATTTGTTTAAACAGAGTCAGAGTCAGACCTGGGT
TTATACTGATTGAACATTGACTTAAACTCAAGCACTCCTGAAAAATGGGT
CATTTAAAACTGCCGCCGAGTTAGCCTGTAAACCTCTTTCTTATTTAAAT
GTTGGTtattatgtttttatttgtttttctttctgatTTGATTTTTTACG
CGTACTAAATCTTTTAGGATTTTATATCTtgcttaaaaacatcaaacaat
GTTATATATAAATTCTTTTAGTTTTGtatttatgaaaaattatattattt
tttgttagttTATTCACAATTTattgtatgatttttttaaattattgtaA
ATTTATTTCGAAGCATAAGGGACTTTACACACAAGGATGTGTTTATTCTA
TAGATGTCTTTTTTTGGGATGATGTATAACTACTCGACAAAATTATGATG
AAATTAATTctttgtaaaactttttttattactATATTACTTTTAAGATG
TTAATTATAGTATCGTATTTACTGCTTAACTAAAGCTTGGATATGTATAT
AAAActcatttttttagttttaaaattaaaataaaacttttgaaagggAT
ACTTATaacgtttcaattttttttgaaatctttgttgatcgttttttaat
ttccaaaaaattcc
Run BLAST on NCBI

protein sequence of TCONS_00052926-protein

>TCONS_00052926-protein ID=TCONS_00052926-protein|Name=TCONS_00052926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MSMDEFRAKVLERGASSIKGIGRTFRIYDDDGNKSLNLEEFCEGVKDYGL
DFDADKCSELFKTFDKDGSGSLSFDEFLVGLRGNLNDGRMKIVKEAFKRA
DRSGDGVFDAKDMKRVYKVTEHPKYKNGEWDENQVFTDFLKSFEPDESKR
DGKVTEEEFINYYAGVSANIDNDAYFNLMLRNAWKI
Run BLAST on NCBI

transcript from alignment at scaffold_222:391278..399799+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052926 ID=TCONS_00052926|Name=TCONS_00052926|organism=Clytia hemisphaerica|type=transcript|length=8522bp|location=Sequence derived from alignment at scaffold_222:391278..399799+ (Clytia hemisphaerica)
CGCGGGCCCTGATCCATCTTTTCTTTAGTCAAGATTATGCCCTGTATACC
CCCAGGGCAGGGCGCAAGGCTGGCTCAAATTGTTTTGCTGAGGCTACTGG
GGATATTAAAAGAAGTAAAGGCGGATGAGGGGTGGTTGGGCGGTGAATAG
GATACATATATTTTGATCTGGAAACCGTCCTTCTCTAATTACTTCAATAG
AAACCAGTTGTTAATTTTGACCGCGCGTGTTTTAAAATCCTTTGTTGTGG
TGTCTCAGCTACCAATCAACGTCTGATCTAACTACACAAATCGCTGTTTG
GGAAATCAAGACAATCGAAAACAAATTAAAGACCAAAACATCTGGGTTTC
CTTGACGAGACCTCTAGCTACACACCTCTCACCAGCTCATTCTTTGCTCA
TTGTCTCTCCAAAATTGGAAAGACtcaacaaattattttttcattgaaag
ctTCACAAGACTGAGCAAAGATGTCTATGGATGAATTTAGAGCCAAAGTA
CTCGAGAGAGGAGCTTCATCTATTAAAGGAATTGGAAGGTATAATTCTAT
TTTTCCAGCTACCAAAAATAATGCCTGTTTGTATTTTACTTGTGTTTGCA
TGCTGTTTTGAATACGAGAGCTGCACTTCCAATTCTTAATAATCTTTTCC
TCAATTGACTTTATTCAGGATGATATTGGTGAAATGATTTTTGTTCACAG
ACAGGCGTGTCACATTTCATTTACTGTAGAGAATTAAGAAGGAGGCACTT
TTCTACACtgtcagtctgggaaatcctctcaattgcacgtttatgttccg
aggccgtaagcgcgcaattgcacggttatcaaaatggcNcacgcttatgt
tccgaggccgtaagcgcgcaattgcacggttatcaaaatggcagaatttt
taagcgtgtaattacacgcttatcgaaattgttctgaaacgggcgaTAAG
CGTTAAGCAAGATTGACGGGTGACGGCTTTTGCGGTAAGCGTGTAATTGC
ACGTTTTAAAATTTCCTACTATATTTTTGACACGtaattccttccgaaag
ctctgttgaatttcaaaagcctagggcagttttactcaaaatttatcgta
gaagaagattccgtaaaaatggattgcccgttaaaccatgccttcgcccg
aattagagaattctgaacccctagaaatccctaagcaatttcaaccgggg
cgggagcgggcgtaaattataaccatgcaattacgcgcttacgccctcgg
aacataagcgtgcaattgagaggatttcccagactgactGTACTCTGCCT
GATGATAAGAGGATATATcattgctttgtttttgttaatagacctttttt
taaagaggcagccatgttgaataattatgtactccagcacaaaaacaatg
atacagccttGCATATACTGTATcgtgcatattttaaaaattatgcatgg
ctgtatcattgtttttatgctggagtacataattattcaacatggctgcc
tctttaaaaaaaggtctataccaCACATTTAATTTAACTAATagtcatta
tttttgaaaatcacagATGCTAAATGAAAAGAATAAGATGTGAAATACCG
TAagtctaatattgacatccctcgtctaattccgacaccctttctttaga
gagacaggaataatagaatgaaagcttgaatctttaactgaaaaaggatt
attcctctctgaccactgagcaaagaaaaacagcttctaacctttctatc
aatttcagctgataaaaagggtgttgaaattagaggaggggtgtcgacat
taaaCGAAGTTACGGTATGATAAAAACTAGAGGACGCTCTCCCAGCGCTC
CGGAAACTTCCAGAGTTTTCCTGAGTTGctaaaaaacactgtttttctCT
CTGGAAATTTCCAGAGCCCTTTCGGTGCTTCCGgggcaagtgatttttaa
cacgttctaaaaaaacgtttaagcatggttacaaaaaataatcaaaatat
tgaatGGTTCAGCCATTGAtgagaaattgaatttgtcacattatATTCAA
AAGCATCCACTGGTGgaaatatcaaaaacaatttaaaaacgtGAGGTCTT
ACTTTCGTGAGTCggctgattttttttaaatacgcGCAGTTAGTTTTCAC
ATGATTAGCACAGCAAGCGTCATCATAATTATATTGCAGATATCTTGCTC
CGGAACTTCGGTGCAGATCAATCGCTGAAAATCTAGCTCCGGTACACCGG
AAGTGCTCCGGAATCTTCCGCTGTTCCAGAGCAcgaaaaaaaggcacttt
ttgcTCGGGACTTTTCCAGAGCCTCGAGAGGGTCCTTAAACTAGGCGTAT
GATAAACCATGGTATTTAAACTTGAGGTTGCTTTTAACCAGATGATGTCA
AGCGAGcaactttgaataaaaattgtaaTTATTAAATCTCAATCAAACAG
CCAATTTCTGGGTAATATTatattgcgttcgagtaaggttagattggttc
gattgatagttgactacgtttgattggtttgatttgcCTGTTAGTTTTCA
GTGGTCTTTAGAGTTAAAATGTGTTGTGTTAATACTATTCTAGAAAAGAG
TTAATTCCTCTCCCCATGAAACATCTTCATGATCTAGgtcttttcaattt
taaaaaagcCTCCATTCAATAAAAATTATGGATTTCCAGATTCTGAAATT
TACATTCAATGAATACAAAAAGTGGAGAATCAAATGGACAATCAAATTCT
TAAAATAAGCACTCAAGTCAAATCACTAATCTCAGTGGTTTTCAAGCTTA
CTTATTGACTTTGAATGTTTTGCATTGTTTGGTTATTCTGCAAGCTTAAT
AGAAATCCACTGTCCATGGCATGATTTACCGTAGTTTTTCTAAGTTTCCC
ATTAACTTATAAAACGACAGTATAAGCTGATAGAGCTTGAAataatatta
ttatatacctgtaggcaaaaacagccattgaataattcctgatataacat
ggctattataccacggtataattttttttcaaattttgctttcaaagttt
gatttttttgtcgctcttgttgttatatcaaagaaattcattaaaataaa
tctattgtcaatttcattaacaaattttatgactcaaagtaattaagaaa
atcattaaaaaagaaaaacattcgaacgctCGATTATGGGAGTGTTATAT
GTGAAACGTTCGGCAATTGAcacaattaatttttttgatttttgcctcta
ggtatataataatttacccattgaatatctgcttattgtTGATGACATTG
GACATACAATTGACTAAAATTGATCCAAAAATCACTTGTGTCAATATTAC
TGTAAAGTATAACtgaacaaagatttagaaatagaaatatgTTAAGATTA
TGTCTGACCTTGTGGTGAAGCAAACATTTTTAGATCATTATTTGGACACC
TCCTGACAACAGcttttatttcatttcaaaagGGTAATCGTAAAGCTAAA
TTTATCAGAATTGAATTTTAATAGGTACAGAGtaggaaaatttttaaagg
CTGAAAGCCTGTattgataaaatcttttaatttggTTATCAAGGGAAGTC
TGCATGTTGCCTAAGCAATTCATTTTTGTCAAACAATAGCTTTTCAATAT
GTTGAAGACATCTCAATTCAAATAAAGCTTCATGAAAAGGTCTGTAATGC
AAATAAAATACAAGTTGTGGTCGTTCTATTCAAAAAGATGTTTTATAGCA
TTGAATATGCTAATGGTTTGTTAATTATATCGTTATAGCATAATATTCAA
TTATGGCATTAAAAAGCACTCTTTTTGTACAGTCATTATTGATTCCATTA
TGCTTACTATATGCCATTTTACCCTGATCCTCACTAAGGCTGTTCTACAA
TACAATCTACAATTTTGAAGCCTCGTATTATATACAACCAAGCCAGAGGT
TCATTTACAATTTCTAAATTCTTCTCTATGCAAGAAAAACTTGTTcccca
attttcatttttgtttggttAGAAATCCTACACACTGTGTAGCAATTGTA
AGTTCTTTATTTCTTAAtaaatatttagaatttttattttatttttcagg
acaTTCCGAATCTATGACGATGATGGTAACAAATCATTGAATCTTGAAGA
ATTTTGTGAAGGAGTCAAAGATTATGGATTAGACTTCGATGCTGATGTAA
GAATAATTCTTTCAATGGGTTTTTTAGGACAAAATGGATCAGGGTAATTA
TTCTCCTGGAGCTCTCAATCTACTCGACAATATTACAATGTTTTAAGtga
taccgggtgtcccagaaaaaagtcccccctctttgaagtgaattttctca
aGTTCTATGAACCGTTAAGAATCACTCCTAATCCATTCGAAAGAGCAAGG
ATAGAacttttgaggggtcatttgtcacATTTGGTCAACTAGATGGTAAA
ACTGAATGGACACCCGGTATTATCCTTAAGATTTAGTCGATAAATTCTTT
TTTGCTGGACTATGTGAAATAAGTTTTTCCCTCATTCTTATTTGGATATC
CTTATCAGTAGTAAACCATCTTAATACTTGAATAATTCAAATAAGGGTTC
TACAAGGCTTGacatcttcttttttgaagtggGATAAAACTTTAATTAGA
TATTTGTATAAACACCTTTTTCACTTCACCACTAATACGATTTTGACAGC
TTTCAAGTTTTCTTTGAAGTCTCTTTTTCACagtttttttcattaatttt
tgattcTCGGTATTCTTCATATTCAAAGCTTTAATTTACcagttttgtat
ttttaaaaggGACATCCCCAGTCAGTTAATGCATCTTATCCCTGCTTTTA
CTCGATTGgctctttttaaaaacaaaaagatgccCCAAAAACAAGTTATA
CATCTTTTGTAAGATGTAGATCTATTGTGAAATTTCAAACAGCCAAGGGT
ACTTTAAAAAATAGGGGaattcattagtttttttaaatgtagACTGATTC
GTGTTTTaccattttttaaccttttctttgccacggaaagtcatttgaca
tctttttcaaccaataagatttaataatttcgagggtaaaacaaacatta
tggtttaactcactaaaagattatgCTTACTGAAAACACGtaattaatct
ttagtaagtgttctgttgtaccctagttctgacgtcatgccgtggcGAAG
AATTCTTCAATTCATAAAGTCAGATATTTTACTGTACATGATCATCTATC
CTGAATTCTTCATAATGTTCCATTTCAGAAATGCTCAGAGCTCTTCAAAA
CGTTTGATAAAGATGGAAGCGGAAGTCTCTCATTTGATGAATTCCTCGTT
GGACTCAGGGTGCGTAAAATTTATTATATAATTTACTCAATGGCTTCTAT
CACTCAAAACTATCACTCAAACTCACACATGAAGAATATTTCTGAGGTCG
AGTATTAGTagttaaagtcttttgaaaagCTTATTGGCTGTAGGGGCAAG
AAAGTGTTTCGAGTTTGCTTACTTTTCAGTGGATATAAACTAACTAAACA
AGCTATTACACCTCTGTTCCGAGCCTAAATCTTACCATTGTCAATGACCT
GTTTAAAATAAGAGCAGTCCTTATTGTAAGTTTAAtcattttcggttttt
ttttctccatttaatCAGGGTAATTTGAACGACGGTCGCATGAAGATTGT
CAAAGAAGCTTTCAAGAGGGCTGATCGCTCTGGTGACGGTGTTTTCGACG
CCAAAGATATGAAGAGGGTTTACAAAGTGACCGAACATCCCAAATACAAG
AATGGAGAATGGGACGAGAATCAAGTGTTCACTGATTTCTTGAAATCTTT
TGAACCAGATGAGTCTAAGAGAGACGGAAAGGTATGGGCATCAAATATGT
TGTGTAAATTTAATGCTAGTTTGACCAGGGGGGGTCAGGGCCCAGGATAC
CAAccagggcccaaaaacctgacttttcgagatttgaaagtagtagacac
caccacccccaacttgaaaatcccaattttctaaaaaaggggggacccac
ccccctaaattggtatcaatacgaacttgaaaatcctgatttttctgaaa
aagggggacccacccccctcCCTAAATTTACAATCAGTAAAAATGCAAGA
AGTTATATGCATAAGATACTGCGTACAAGGGACGCTAAACAGAAtctgtg
gatgtttttattcaaagaacattcctcTTATTAATCACTTATATTATGTC
AGGGGCCGCGGCACCGGGGGGGCACCCGGCCTTGTCCCAACCACattatt
tcaaagtaaaaagaaaatttactaatCAAGCCAAATTTTGTTTAATAACG
TTAAAACAGACAGTTTTAGGCGATCTAGAAgggctaaaattaaaaaatgg
taGGGCCTCCTTCCTCAGTATATCAtggccctatcactttcaatttgtca
tttttgaaaaatcaaaaagttttaaattagtctctctaagggttggtttt
cggaggtcccgtctgcacatacccctcattcgccaaccctaatAGCCCCC
AGGCCGGATGAATCTAGTTTTGAATGgattttggttgattgaaaggattg
agagcagcaaaagttgaataaaaatttaatttcaattatagaatGAAGAA
TCTTTTATATGGAATCAGGGTATACAGGGGTATAgtgtaaacgattcaaa
taagtttttatacttacattatacaacattttaagtcagataccaatttc
aaatccaacaaaaattaaaaaaagggggacccactcCCTCATagtggtat
cgataccaacttaaagattccctaattttcaaaaaaagggggacccaccc
cctcattttggtatcaataccaacttgactttttgaaatttaaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccctggttt
gACAGTATAAAAAGTGCAATCGGAATAGCTATGACAGAATGCAGAGCTTA
CAAAAATATTGCAACATAAAAAAGAACAGCAAGCGTTTCGGGTAATACAG
GTCTGTACAAACCATTGATTTACAATGCTTTTACGTAAAAAGTGTTGAGT
AAGAAAAAATTCGAATGGCCTTTATTTTTTATGGAAGTAAAATATTTCAC
ATTAATTTTGCAAGGTCAGCGCTTGGTTTCATATATGtattgattgactt
caaaacgATTGTGAAGAGACATTGATTCTAGGGGTGAAATTGACATCTTT
ATTATGTCAACTCAAAATTTTGCACTTGTTTTTCTAGGTCACTGAAGAGG
AGTTTATCAACTACTACGCTGGCGTCAGTGCTAACATCGACAATGATGCC
TACTTCAATCTTATGCTCCGAAACGCCTGGAAAATCTAAGTGTGGATGCA
TAGATGGTATGGGTTTTGTTGTCTTGTATTATAACCAAgatcttttaaga
aaaaaaacttgtttttaacaaCATACACCCTTcagaaaaccaaaaaaaaa
aaacaatttattatttGTTAGATTTGTTAGCTTACTATTTCGAATAGGTT
CTATAGCTGTCAGATCGGTTAGAATTATTTAAATTTGATCTTCTAGCTAG
TGTAAAAAAACTACAGAACAGTTTTCTTTCGGAGGGAATTCTGAAATCAA
CGacctttttaaaataaatttgaatttaaacgagcatctatttgattttt
ttaaaaccgTACAAAAATCGTAAGATTTGTTTAAACAGAGTCAGAGTCAG
ACCTGGGTTTATACTGATTGAACATTGACTTAAACTCAAGCACTCCTGAA
AAATGGGTCATTTAAAACTGCCGCCGAGTTAGCCTGTAAACCTCTTTCTT
ATTTAAATGTTGGTtattatgtttttatttgtttttctttctgatTTGAT
TTTTTACGCGTACTAAATCTTTTAGGATTTTATATCTtgcttaaaaacat
caaacaatGTTATATATAAATTCTTTTAGTTTTGtatttatgaaaaatta
tattattttttgttagttTATTCACAATTTattgtatgatttttttaaat
tattgtaAATTTATTTCGAAGCATAAGGGACTTTACACACAAGGATGTGT
TTATTCTATAGATGTCTTTTTTTGGGATGATGTATAACTACTCGACAAAA
TTATGATGAAATTAATTctttgtaaaactttttttattactATATTACTT
TTAAGATGTTAATTATAGTATCGTATTTACTGCTTAACTAAAGCTTGGAT
ATGTATATAAAActcatttttttagttttaaaattaaaataaaacttttg
aaagggATACTTATaacgtttcaattttttttgaaatctttgttgatcgt
tttttaatttccaaaaaattcc

Coding sequence (CDS) from alignment at scaffold_222:391278..399799+

>TCONS_00052926 ID=TCONS_00052926|Name=TCONS_00052926|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at scaffold_222:391278..399799+ (Clytia hemisphaerica)
ATGTCTATGGATGAATTTAGAGCCAAAGTACTCGAGAGAGGAGCTTCATC
TATTAAAGGAATTGGAAGgacaTTCCGAATCTATGACGATGATGGTAACA
AATCATTGAATCTTGAAGAATTTTGTGAAGGAGTCAAAGATTATGGATTA
GACTTCGATGCTGATAAATGCTCAGAGCTCTTCAAAACGTTTGATAAAGA
TGGAAGCGGAAGTCTCTCATTTGATGAATTCCTCGTTGGACTCAGGGGTA
ATTTGAACGACGGTCGCATGAAGATTGTCAAAGAAGCTTTCAAGAGGGCT
GATCGCTCTGGTGACGGTGTTTTCGACGCCAAAGATATGAAGAGGGTTTA
CAAAGTGACCGAACATCCCAAATACAAGAATGGAGAATGGGACGAGAATC
AAGTGTTCACTGATTTCTTGAAATCTTTTGAACCAGATGAGTCTAAGAGA
GACGGAAAGGTCACTGAAGAGGAGTTTATCAACTACTACGCTGGCGTCAG
TGCTAACATCGACAATGATGCCTACTTCAATCTTATGCTCCGAAACGCCT
GGAAAATCTAAATGTCTATGGATGAATTTAGAGCCAAAGTACTCGAGAGA
GGAGCTTCATCTATTAAAGGAATTGGAAGgacaTTCCGAATCTATGACGA
TGATGGTAACAAATCATTGAATCTTGAAGAATTTTGTGAAGGAGTCAAAG
ATTATGGATTAGACTTCGATGCTGATAAATGCTCAGAGCTCTTCAAAACG
TTTGATAAAGATGGAAGCGGAAGTCTCTCATTTGATGAATTCCTCGTTGG
ACTCAGGGGTAATTTGAACGACGGTCGCATGAAGATTGTCAAAGAAGCTT
TCAAGAGGGCTGATCGCTCTGGTGACGGTGTTTTCGACGCCAAAGATATG
AAGAGGGTTTACAAAGTGACCGAACATCCCAAATACAAGAATGGAGAATG
GGACGAGAATCAAGTGTTCACTGATTTCTTGAAATCTTTTGAACCAGATG
AGTCTAAGAGAGACGGAAAGGTCACTGAAGAGGAGTTTATCAACTACTAC
GCTGGCGTCAGTGCTAACATCGACAATGATGCCTACTTCAATCTTATGCT
CCGAAACGCCTGGAAAATCTAAATGTCTATGGATGAATTTAGAGCCAAAG
TACTCGAGAGAGGAGCTTCATCTATTAAAGGAATTGGAAGgacaTTCCGA
ATCTATGACGATGATGGTAACAAATCATTGAATCTTGAAGAATTTTGTGA
AGGAGTCAAAGATTATGGATTAGACTTCGATGCTGATAAATGCTCAGAGC
TCTTCAAAACGTTTGATAAAGATGGAAGCGGAAGTCTCTCATTTGATGAA
TTCCTCGTTGGACTCAGGGGTAATTTGAACGACGGTCGCATGAAGATTGT
CAAAGAAGCTTTCAAGAGGGCTGATCGCTCTGGTGACGGTGTTTTCGACG
CCAAAGATATGAAGAGGGTTTACAAAGTGACCGAACATCCCAAATACAAG
AATGGAGAATGGGACGAGAATCAAGTGTTCACTGATTTCTTGAAATCTTT
TGAACCAGATGAGTCTAAGAGAGACGGAAAGGTCACTGAAGAGGAGTTTA
TCAACTACTACGCTGGCGTCAGTGCTAACATCGACAATGATGCCTACTTC
AATCTTATGCTCCGAAACGCCTGGAAAATCTAAATGTCTATGGATGAATT
TAGAGCCAAAGTACTCGAGAGAGGAGCTTCATCTATTAAAGGAATTGGAA
GgacaTTCCGAATCTATGACGATGATGGTAACAAATCATTGAATCTTGAA
GAATTTTGTGAAGGAGTCAAAGATTATGGATTAGACTTCGATGCTGATAA
ATGCTCAGAGCTCTTCAAAACGTTTGATAAAGATGGAAGCGGAAGTCTCT
CATTTGATGAATTCCTCGTTGGACTCAGGGGTAATTTGAACGACGGTCGC
ATGAAGATTGTCAAAGAAGCTTTCAAGAGGGCTGATCGCTCTGGTGACGG
TGTTTTCGACGCCAAAGATATGAAGAGGGTTTACAAAGTGACCGAACATC
CCAAATACAAGAATGGAGAATGGGACGAGAATCAAGTGTTCACTGATTTC
TTGAAATCTTTTGAACCAGATGAGTCTAAGAGAGACGGAAAGGTCACTGA
AGAGGAGTTTATCAACTACTACGCTGGCGTCAGTGCTAACATCGACAATG
ATGCCTACTTCAATCTTATGCTCCGAAACGCCTGGAAAATCTAAATGTCT
ATGGATGAATTTAGAGCCAAAGTACTCGAGAGAGGAGCTTCATCTATTAA
AGGAATTGGAAGgacaTTCCGAATCTATGACGATGATGGTAACAAATCAT
TGAATCTTGAAGAATTTTGTGAAGGAGTCAAAGATTATGGATTAGACTTC
GATGCTGATAAATGCTCAGAGCTCTTCAAAACGTTTGATAAAGATGGAAG
CGGAAGTCTCTCATTTGATGAATTCCTCGTTGGACTCAGGGGTAATTTGA
ACGACGGTCGCATGAAGATTGTCAAAGAAGCTTTCAAGAGGGCTGATCGC
TCTGGTGACGGTGTTTTCGACGCCAAAGATATGAAGAGGGTTTACAAAGT
GACCGAACATCCCAAATACAAGAATGGAGAATGGGACGAGAATCAAGTGT
TCACTGATTTCTTGAAATCTTTTGAACCAGATGAGTCTAAGAGAGACGGA
AAGGTCACTGAAGAGGAGTTTATCAACTACTACGCTGGCGTCAGTGCTAA
CATCGACAATGATGCCTACTTCAATCTTATGCTCCGAAACGCCTGGAAAA
TCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033435XLOC_033435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052926-exon-scaffold_222-1491911889:391278..391815TCONS_00052926-exon-scaffold_222-1491911889:391278..391815Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1510915933:391278..391815TCONS_00052926-exon-scaffold_222-1510915933:391278..391815Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1575043694:391278..391815TCONS_00052926-exon-scaffold_222-1575043694:391278..391815Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1491911889:395377..395473TCONS_00052926-exon-scaffold_222-1491911889:395377..395473Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1510915933:395377..395473TCONS_00052926-exon-scaffold_222-1510915933:395377..395473Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1575043694:395377..395473TCONS_00052926-exon-scaffold_222-1575043694:395377..395473Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1491911889:396556..396636TCONS_00052926-exon-scaffold_222-1491911889:396556..396636Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1510915933:396556..396636TCONS_00052926-exon-scaffold_222-1510915933:396556..396636Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1575043694:396556..396636TCONS_00052926-exon-scaffold_222-1575043694:396556..396636Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1491911889:396946..397158TCONS_00052926-exon-scaffold_222-1491911889:396946..397158Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1510915933:396946..397158TCONS_00052926-exon-scaffold_222-1510915933:396946..397158Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1575043694:396946..397158TCONS_00052926-exon-scaffold_222-1575043694:396946..397158Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1491911889:398715..399799TCONS_00052926-exon-scaffold_222-1491911889:398715..399799Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1510915933:398715..399799TCONS_00052926-exon-scaffold_222-1510915933:398715..399799Clytia hemisphaericaexon
TCONS_00052926-exon-scaffold_222-1575043694:398715..399799TCONS_00052926-exon-scaffold_222-1575043694:398715..399799Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052926-proteinTCONS_00052926-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:391278..399799 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.5546	19.9337	239.928	300.181	1017.18	776.201	529.001	514.88	190.062	240.346	128.143	130.968	85.6614	78.3849	56.5411	74.6908	108.48	111.324	95.7153	88.768	106.973	98.441	94.6526	85.6637	66.812	70.1186	94.2755	68.6863	54.5177	50.8106
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00052926 vs. Swiss-Prot (Human)
Match: CAPSL (Calcyphosin-like protein OS=Homo sapiens GN=CAPSL PE=2 SV=4)

HSP 1 Score: 193.741 bits (491), Expect = 9.685e-57
Identity = 89/185 (48.11%), Postives = 132/185 (71.35%), Query Frame = 3 
Query:  474 SMDEFRAKVLERGASSIKGIGRTFRIYDDDGNKSLNLEEFCEGVKDYGLDFDADKCSELFKTFDKDGSGSLSFDEFLVGLRGNLNDGRMKIVKEAFKRADRSGDGVFDAKDMKRVYKVTEHPKYKNGEWDENQVFTDFLKSFEPDESKRDGKVTEEEFINYYAGVSANIDNDAYFNLMLRNAWKI 1028
             ++  R + L RG++ IKG+GR FRI DDD N++L+ +EF +G+ DY +  + ++  ELF+ FDKDG+G++ F+EFL+ LR  ++  R +++ +AF++ D++GDGV   +D++ VY    HPKY+NGEW E QVF  FL +F+    K DG VT EEF+NYYAGVSA+ID D YF +M+R AWK+
Sbjct:   25 PIERLRLQCLARGSAGIKGLGRVFRIMDDDNNRTLDFKEFMKGLNDYAVVMEKEEVEELFRRFDKDGNGTIDFNEFLLTLRPPMSRARKEVIMQAFRKLDKTGDGVITIEDLREVYNAKHHPKYQNGEWSEEQVFRKFLDNFDSPYDK-DGLVTPEEFMNYYAGVSASIDTDVYFIIMMRTAWKL 208
The following BLAST results are available for this feature:
BLAST of TCONS_00052926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAPSL9.685e-5748.11Calcyphosin-like protein OS=Homo sapiens GN=CAPSL ... [more]
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