|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052938 ID=TCONS_00052938|Name=TCONS_00052938|organism=Clytia hemisphaerica|type=transcript|length=1945bpRun BLAST on NCBI transcript from alignment at scaffold_222:48820..75438- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052938 ID=TCONS_00052938|Name=TCONS_00052938|organism=Clytia hemisphaerica|type=transcript|length=26619bp|location=Sequence derived from alignment at scaffold_222:48820..75438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052938 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 215.312 bits (547), Expect = 3.780e-58 Identity = 186/490 (37.96%), Postives = 248/490 (50.61%), Query Frame = 2
Query: 32 QINLA-CNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLC-NVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKIS--ACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEA--SACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSAS--ACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTASA--CDALPCLNGGTCIVDSSNDGFTCNCQPGYSGATCSQS--ACGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCKADGSADGFTCTCKVGYFGVHCT--ASACTSHPCKYGGSCQPDGSDDG---YTCSCLTGFFGNQCE-LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCQV 1432
+INL C +PC SG GY C C G++G C + C+GNPC G TC + NGF+C C G +P C + + C + NPC++G C S GY C C+ G+SG C I+ C NPC NGG+C K + G+ C C ++G CQ +I PC N G+C GY+C C YTG TCE + C +PC NG +C S ++C CP G+ G TC C +PC++GA+C T GY C C GYSG C C PC NGG+C D N F C+C PG+ G C + C +PC+NG +C + D YTCTC G+ G++C +C C NGG+C DG + FTC C G+ G +C + C S PC +GG+CQ DG Y C+C G+ G C+ L S+PC+NGG C+Q C C +G+TG C V
Sbjct: 639 EINLDDCASSPCDSGTCLDKID----GYECACEPGYTGSMCNINIDECAGNPCHNGGTC--EDGINGFTCRCPEGYHDPTCLSEVNECNS----NPCVHGA-CRDS---LNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTC--KDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCI--DDVAGYKCNCLL-PYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQ--NTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSC-TDGINTAF-CDCLPGFRGTFCEEDINECASDPCRNGANCT--DCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTC-VDG-INSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQ-----DGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDV 1096 HSP 2 Score: 209.149 bits (531), Expect = 3.664e-56 Identity = 181/496 (36.49%), Postives = 244/496 (49.19%), Query Frame = 2
Query: 35 INL-ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEAS--ACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSASA--CDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTAS--ACDALPCLNGGTCI--VDSSNDGFTCNCQPGYSGATCSQSA--CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCKADGSADGFTCTCKVGYFGVHC--TASACTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQCEL----------RSCVG-SNPCQNGGLCFQQGISQACICNNGFTGSNCQ 1429
IN+ C NPC +GG C G+TC CP G+ TC C+ NPC G+ S NG+ C C G S C++ + NPC+NGG C + +GY C C GFSGP C+ I+ C+ NPC N G+C + G++C C+ PYTGA C+ + PC+NGG C + + C C G+ G TCE C ++PC +GA C + GY C C G+SG C C NPC NG +CT DG + C C+ G+ G+ C C + PC NG C VDS +TC C G+SG C + C + C NGG+C + + +TC C G+ G C + CD QPC +GG+C+ DG + CTC GY G +C C S PCK GG C + Y C C +G+ G C++ R V + CQ+GGLC G + C C G+TGS C+
Sbjct: 677 INIDECAGNPCHNGGTCEDG---INGFTCRCPEGYHDPTCLSEVNECNSNPCVHGAC---RDSLNGYKCDCDPGWSGTNCDINN---NECESNPCVNGGTCK---DMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVA--GYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPT-GWQGQTCEVDINECVLSPCRHGASCQNTHG--GYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCT-DGINTAF-CDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDS----YTCTCPAGFSGIHCENNTPDCTESSCFNGGTCV--DGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQ-DGCG-SYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQ--YRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCE 1143 HSP 3 Score: 192.2 bits (487), Expect = 1.106e-50 Identity = 175/465 (37.63%), Postives = 226/465 (48.60%), Query Frame = 2
Query: 101 AAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMC--KISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEA--SACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTC--SASACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTA--SACDALPCLNGGTCIVDSSNDGFTCNCQPGYSGATCSQ--SACGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCKADGSADGFTCTCKVGYFGVHCTA--SACTSHPCKYGGSCQPDGSD--DGYTCSCLTGFFGNQCELRS--CVGSNPCQNGGLCFQQGISQACICNNGFTGSNCQ 1429
A +TC C G++G C + CS PC G TC N + C C G + P C + D C + +PC + G C GY C C G++G MC I C+ NPC NGG+C + GF C C Y C + PC +G A GY+C C + G++G C+ + C+ NPC NG C + GY CTC GFSGP C + + C +NPC N TC D GY C C+ Y+G+TC + C PC NGG C + F+C C G+ G TC + C +PC++G SCQ N+ GY C C+ GY G NC +C PC NGGSC DG F C C G+ G C + C S PC+ G +C +D D YTC+C GF G CE + C S+ C NGG C S C+C GFTGS CQ
Sbjct: 584 VATFTCLCRPGYTGHHCETNINECSSQPCRHGGTC--QDRDNAYLCFCLKGTTGPNCEINLDDCAS----SPC-DSGTCL---DKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTC--EDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHG---ACRDSLNGYKCDC-DPGWSGTNCDINNNECESNPCVNGGTCKDMTS--GYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDD--VAGYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQ--NTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSC-TDGINTAF-CDCLPGFRGTFCEEDINECASDPCRNGANC----TDCVDSYTCTCPAGFSGIHCENNTPDCTESS-CFNGGTCVDGINSFTCLCPPGFTGSYCQ 1019 HSP 4 Score: 185.652 bits (470), Expect = 1.491e-48 Identity = 172/489 (35.17%), Postives = 236/489 (48.26%), Query Frame = 2
Query: 35 INLACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTESS-CSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPS-SPGFECACVAPYTGAICQESICSLQ-QPCKNGGSCAVAPGTPGYQCTCANNGYTGPTC--EASACDVNP--CANGAQCNPSAASPGYTCTCPVGFSGPTCSASA--CDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTA-SACDALPCLNGGTCIVDSSNDGFTCNCQPGYSGATCSQSA----CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCKADGSADGFTCTCKVGYFGVHCTA--SACTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQCE--LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCQV 1432
++ AC NPC++GG C +L Y C CP G+SG++C ++ C+ NPCA G C+P ++ + C C P C + CG G C +GG C + Y C C +GP C+ CS +PCQNGG+C +P+ ECAC+ +TG C+E+I CKNGG+C G Y C C +TG C + C + P C NG C+ + GY C C G++G CS + C + C +GATC D A Y C C G +G C AC + PC G C + N C C GY+G CSQ G NPC++ G C N+ + C C +GY G C + C PCQN +C F C C GY GVHC C S PC + G C ++ + C C TGF G+ C+ + C S PC+NG C + C+C G+TG++C+V
Sbjct: 102 LDNACLTNPCRNGGTCDLLTLTE--YKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEAS--YICHCPPSFHGPTCRQDVNECGQKPGL--CRHGGTC---HNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTC--RPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGAC--VDGVNTYNCRCPPE-WTGQYCTEDVDECQLMPNACQNGGTCHNTHG--GYNCVCVNGWTGEDCSENIDDCASAACFHGATCH-DRVASFY-CECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCI--NTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCL--DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINE--FQCECPTGFTGHLCQYDVDEC-ASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV 565 HSP 5 Score: 165.236 bits (417), Expect = 3.341e-42 Identity = 184/582 (31.62%), Postives = 245/582 (42.10%), Query Frame = 2
Query: 32 QINLA-CNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSL-SNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTA------------------KPSSPG------------------FECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCE--ASACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSA--------------------------------------------------SACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTAS--ACDALPCLNGGTCIVDSSNDGFTCNCQPGYSGATCSQSACGPNP----------CQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCKADGSADGFTCTCKVGYFGVHC--TASACTSHPCKYGGSCQ-PDGSDDGYTCSCLTGFFGNQCE--LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCQV 1432
++ LA C +PC++GG C S + ++C CPTG+ GQTC C +PC G++C + G+ C C AG S C D C NPC NGG C+ NT + C C GF G C+ I+ C+ +PC+NG +CT + ++P F C C +TG+ CQ + QPC +GG+C G+ Y+CTC GYTGP C+ CD +PC NG +C + Y C CP G++G C C +PC+NGATCT GYSC CV GY G C+ C + PC NGGTC+ D N + C+C G G C + NP C N G+C + GY+CTC G+ G C + C PC G+ + F C C+ G+ G C + C PCK GG+C + G+ C C GF G CE R+C GS C NGG C S C+C FTG CQ
Sbjct: 827 EVVLAPCAPSPCRNGGECRQSEDYES-FSCVCPTGWQGQTCEVDINECVLSPCRHGASC--QNTHGGYRCHCQAGYSGRNCETDIDDCRP----NPCHNGGSCTDGINTAF----CDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGS--YRCTCPQ-GYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQ--YRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCT--DYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCL-DLPNT-YKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCV--DQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTC-GSLRCLNGGTCISGPRSPTCLCLGPFTGPECQF 1385 HSP 6 Score: 157.532 bits (397), Expect = 8.663e-40 Identity = 148/444 (33.33%), Postives = 212/444 (47.75%), Query Frame = 2
Query: 170 GNPCATGSTCVPDASANGF-SCTCAAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTL-YAGYSCQCNGGFSGPMCKI---SACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTC--EASACDVNP--CANGAQCNPSAASPGYTCTCPVGFSGPTCSA--SACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTASA--CDALPCLNGGTCIVDSSNDGFTCNCQPGYSGATCSQSA----CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCMA--SNCDMQPCQNGGSCKADGSADGFTCTCKVGYFGVHCTA-SACTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQC--ELRSC-VGSNPCQNGGLCFQQGISQACICNNGFTGSNCQV 1432
G C G C +ANG +C C P C + C + PC N G C + + A Y+C C GFSGP+C +AC NPC+NGG+C + ++C C ++G CQ++ PC NGG C P Y C C + + GPTC + + C P C +G C+ S Y C C +GP C C +PC+NG TC P G + + CAC+ G++G C + C C NGG C VD N + C C P ++G C++ PN CQNGG+C N+ GY C C G+ G +C +C C +G +C ++ F C C G G+ C AC S+PC G +C + + C+C +G+ G C ++ C +G+NPC++ G C S C C G+TG C++
Sbjct: 28 GETCLNGGKC---EAANGTEACVCGGAFVGPRCQDPNPCLST----PCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTE-YKCRCPPGWSGKSCQQADPCASNPCANGGQC--LPFEASYICHCPPS-FHGPTCRQDVNECGQKPGLCRHGGTCHNEVGS--YRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGD-VTHECACLPGFTGQNCEENIDDCPGNNCKNGGAC-VDGVNT-YNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCH--NTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVAS--FYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI 451 HSP 7 Score: 141.354 bits (355), Expect = 1.420e-34 Identity = 138/423 (32.62%), Postives = 184/423 (43.50%), Query Frame = 2
Query: 44 ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTE--SSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGENP-------CLNGGDC-SLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEASACDVNPCANGAQCNPSAASP-------------GYTCTCPVGFSGPTCS--ASACDANPCKNGATCTPDGTALGYSCACVGGYSGSTC--TASACDALPCLNGGTCIVDSSN-DGFTCNCQPGYSGATCSQSA--CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCMASNCDM----QPCQNGGSCKADGSADGFTCTCKVGYFGVHC 1201
C+ PC GG C Y CTCP G++G C C +PC G C + + C C +G + C+V V+ + C +GG C NT + C+C G++G C+ + CS +PCQNG +CT G+ C CVA Y G C E I L PC+NGG+C P T Y+C+C G G CE + D NP +P + SP GY+CTCP GF G C + C +NPC T + C C G++G C + C PC NGGTC V S+ GF C C G+ GATC A CG C NGG+C + TC C + G C PC N G+C+ + + C C + G+ C
Sbjct: 1024 ECDSQPCLHGGTCQDG---CGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCW--QTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNT----HHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLG--GYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNT--YKCSCP-RGTQGVHCEINVDDCNP-----PVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCI--SGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLC 1425 The following BLAST results are available for this feature:
BLAST of TCONS_00052938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.