TCONS_00052950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052950
Unique NameTCONS_00052950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052950 ID=TCONS_00052950|Name=TCONS_00052950|organism=Clytia hemisphaerica|type=transcript|length=292bp
CAACTGGTTTCGAATGTTCCTGTCCGACTGGCTTCTCTGGTAACCTGTGT
CGAATGGTGAACGCATGCGACAGATACGGATTACTCTGTCAAAATGGAGG
TACATGTATGGCTGATGGAACAGTCGATGGTTTCTCTTGCACATGCGCAG
CTGGATATTCCGGTCCTTATTGTACTCAATCAGCATGTGGTGCTAACAGT
TGTCAAAATGGAGGAACTTGTATTCCTGGTGCCAATGGTGATTATACCTG
TCAGTGTCCCCCTGGAACTTCTGGTGCTCTTTGTCAGAACTC
Run BLAST on NCBI

transcript from alignment at scaffold_222:75737..76946-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052950 ID=TCONS_00052950|Name=TCONS_00052950|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at scaffold_222:75737..76946- (Clytia hemisphaerica)
CAACTGGTTTCGAATGTTCCTGTCCGACTGGCTTCTCTGGTAACCTGTGT
CGAGTAAGTTAATATAATTTCTACTTTAAATAATCAAGCGGAATAGCAAT
AGTCTAATGTTTGTCCGCGTACAATTGATTATTACCGAGCTTATGTATGT
GTGTTTTCTTCGATAGAAACGGTAAGGTTCTAATTTGACTAGATCCTAAC
CAGCTGAGAACGACGATAAATCAGCACTTTTACCGTCTCGATTTTGCAGG
TTATTCCAAATCCCTTCAGTCACCCTACCGTCCTCAAAAGACCAAATATT
GCTATTGATTACTAGTAACCATTATGATCGTTACATAAGGCAACGTTTCT
TTCGAATTAAACTCAGGCACTGACAAGCTAATGAAAGACCCGATGCTGGG
TCAAAATCAATTGTGTAAAACTTCTTTGCATGTCTAAATTTCACAATTCC
TTCATATTTCTCTCGTTATGTTTCAGATGGTGAACGCATGCGACAGATAC
GGATTACTCTGTCAAAATGGAGGTACATGTATGGCTGATGGAACAGTCGA
TGGTTTCTCTTGCACATGCGCAGCTGGATATTCCGGTCCTTATTGTACTG
TAAGTTAATTCTAATTTCCTTTATTAAAAGGGAGTTTCGTAGACTAGAGT
CGTTCATAATCCATGTGAAACAGTAGCATTGGTGTTTTATATGATAACAC
GATAATTAGCACGAGATAATGAGTTTGTATTAAATTAGCTTACTCTAAAC
TATCTGAATTTGTCGGATAGCATGCTAGAATAAGTATGTTGGTGTTATGT
TATTACTTTTTCACAGTTAGAGTTGAAACCACCAGATCAAAACTTGGTTT
AAATATTGGCCACATTCATGAACTTAACCCCAAAGCTTCTTGTGGAGGGT
TTTAAGTTTCGAAACAGTCGAGTGAAAATTATGAATTACCTTTTTCTCTC
TCTCAGCAATCAGCATGTGGTGCTAACAGTTGTCAAAATGGAGGAACTTG
TATTCCTGGTGCCAATGGTGATTATACCTGTCAGTGTCCCCCTGGAACTT
CTGGTGCTCTTTGTCAGGTAGGTTGTCTGGAAAGATTCGAGGAAATTATA
TACAATTCTTACTTTCACATAGTTTCAGAAACTTTTCTTTTATCAGATAG
ACTCAAAATTATCTTGGATATTATCTGACAATGTTATGTACTTTTTATCT
TCTAGAACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033439XLOC_033439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052950-exon-scaffold_222-1575043694:76894..76946TCONS_00052950-exon-scaffold_222-1575043694:76894..76946Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1575043694:76348..76470TCONS_00052950-exon-scaffold_222-1575043694:76348..76470Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1575043694:75880..75990TCONS_00052950-exon-scaffold_222-1575043694:75880..75990Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1575043694:75737..75741TCONS_00052950-exon-scaffold_222-1575043694:75737..75741Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1510915933:76894..76946TCONS_00052950-exon-scaffold_222-1510915933:76894..76946Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1510915933:76348..76470TCONS_00052950-exon-scaffold_222-1510915933:76348..76470Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1510915933:75880..75990TCONS_00052950-exon-scaffold_222-1510915933:75880..75990Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1510915933:75737..75741TCONS_00052950-exon-scaffold_222-1510915933:75737..75741Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1491911889:76894..76946TCONS_00052950-exon-scaffold_222-1491911889:76894..76946Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1491911889:76348..76470TCONS_00052950-exon-scaffold_222-1491911889:76348..76470Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1491911889:75880..75990TCONS_00052950-exon-scaffold_222-1491911889:75880..75990Clytia hemisphaericaexon
TCONS_00052950-exon-scaffold_222-1491911889:75737..75741TCONS_00052950-exon-scaffold_222-1491911889:75737..75741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:75737..76946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.319888	0	0.322807	0	0.721612	0	0	0.647166	0	2.1056	0.663131	0	2.79285	4.7801	0	0	0	0	0	0	0	0	0	0	0	0	0	0.623453	0.472868	0
Blast
[Close]
BLAST of TCONS_00052950 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.615e-17
Identity = 40/97 (41.24%), Postives = 49/97 (50.52%), Query Frame = 3 
Query:    6 GFECSCPTGFSGNLC-RMVNACDRYGLLCQNGGTCMADGTVDGFSCTCAAGYSGPYCTQSA--CGANSCQNGGTCIPGANGDYTCQCPPGTSGALCQ 287
            GF CSCP GF+G  C R +N C +    C+NG  C        F+C C  GY+G  C  S   C  N C NGG+C  G +  Y C CP G  G  C+
Sbjct: 3883 GFSCSCPDGFTGRACERDINECLQSP--CKNGAIC--QNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVD-SYYCHCPFGVFGKHCE 3974
The following BLAST results are available for this feature:
BLAST of TCONS_00052950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT42.615e-1741.24Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
back to top