TCONS_00052966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052966
Unique NameTCONS_00052966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052966 ID=TCONS_00052966|Name=TCONS_00052966|organism=Clytia hemisphaerica|type=transcript|length=854bp
ACGACATAAAAAACATGACATAATTTCAAACTGTCCAGCTGAAGATTTGT
GATCACAAGGGTGATACTTATTCAAAACAACCAACAGAAGTTTTTTCACA
AACTTTGTAACTAAAGTGCATCcggatataattggcagtggaaacaagct
ccaaatttttactaaaaatgggggttatgttatctctTTTGAACAGTGCA
GTTAAAAGTTGGAGAGTGTTAAGTGTCGATGCATGGTATTATTTGGTATT
ATTGCAATTGcagaatataaaagaaacataatTCAANTGATGCATTGGTA
TTATTTGGTATTATTGCAATTGcagaatataaaagaaacataatTCAAGc
ttcaaggagaaaacagGATGTCTATATACTACCCCTACAAGCATCTTACA
GTCAAGTTCAATAAAAAGACATTCAAAATCACAATTCTTACCTGTTGATG
agaaagttaaatcaaaagCATGGAACTTGCAATTACCAGGTACGacaaat
attcaaataaaacCAGAACCATCAGCAGATCAGGTAAATTTAATGTAAGT
GtttgaatttaaatttgaaataggCTTTCTGACATTGAGTGTATTTTAAT
CCAGACTCTCTTCCTTCCCTTCCCACAAACAATCGATAAACCAATCGATT
GATTCCAGTCCAGGCATGCAGCAGGGGGGTCGTcagcatgtcactagtcc
gacactttctggTCCGACAGTataatagtccgaatctataaaataaattg
ttgacgtcaaatacaaaactgaacggttgtcgtctgaaaaatgcacaaag
atggcggaaaaaattcaagaaaataatcaaaaatcaccatcaataaacGA
CTTT
Run BLAST on NCBI

transcript from alignment at scaffold_222:291027..297300-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052966 ID=TCONS_00052966|Name=TCONS_00052966|organism=Clytia hemisphaerica|type=transcript|length=6274bp|location=Sequence derived from alignment at scaffold_222:291027..297300- (Clytia hemisphaerica)
ACGACATAAAAAACATGACATAATTTCAAACTGTCCAGCTGAAGATTTGT
GATCACAAGGGTGATACTTATTCAAAACAACCAACAGAAGTTTTTTCACA
AACTTTGTAACTAAAGTGCATCCGGATATAATTGGCAGTGGAAACAAGCT
CCAAATTTTTACTAAAAATGGGGGTTATGTTATCTCTTTTGAACAGTGCA
GTTAAAAGTTGGAGAGTGTTAAGTGTCGATGCATGGTATTATTTGGTATT
ATTGCAATTGCAGAATATAAAAGAAACATAATTCAANTGATGCATTGGTA
TTATTTGGTATTATTGCAATTGCAGAATATAAAAGAAACATAATTCAAGC
TTCAAGGAGAAAACAGGTAATTTTTGTACATACCGTAAATCCTTGAATAA
GCGCCCGAGCGCTTATTTAATTTTTCAGGCTCTAAGGGCGGCGCTCATTC
AAGCGAGGCGCTTATTCGAGCGGGCGCTTATTTCTTTATTTCAGAAATTC
GTATATCAACAAATTTGGAATCTGCTTAAACTTAACTGTTTCAAAGGGTT
GATTTTTCACAAAAGGATGAATAAAAGAAAAATTTGCTTTGTAAAAGTGA
AAAATGAATCTGAAGAAAAAGAAACAGAAAAAAAAGAAAGCTAAAAGACC
TTGATTTTTATTTTTGTTCCAAATTTTTCGACTGTTAATCATCCGAAGAG
AAATTCTTATCCCGGAAATTAGCCTAGGCCACCAATTCGAATAAGCGCCC
CTTCCTGGAGGGGGGTGCTTATTCAAAGGGGGGCGCTTATTCGAGCAGGG
CGCTTATTTCAGGATTTCTATATTGTAGAGACAATTCCCCATGGTTGCCA
AATGGTGACTATGGGTAATTCCTTTATTCTTTTGTTCTTTTCTTTTGTTC
TATGTAACTAAAGACGCTTCACAAATCGAAGTACTTCCACTATGCACTAA
CTGCTTAGAAGGGAGATGTCGACATTAGACCAACTTACGGTACTTTGCAG
ACTTCTATTGAATAATAAATTACACTTCTAGTACAAATGCGGATAAATTA
TCTTACCTAGGTAACAGTTGTGTTGTAAAAGACAGATCAATTTATGACGT
TATTATTTTAACAAAATTTCTGCTGGTGTAATTATTTATTCAAAAGACTG
TCTCCCTCTCCCATACGACTAAAGCAAGGTATATATGTTGGCATTTTATA
CAACCAGACGATCTCAATCAAACGGAACCGACGATCGAACCAGTCTAACC
AAATCGAACGCAATCGACTGATTGAAATTCGATTGTCGAATGCAATCAAA
TCTCAATCGAATATTACCGCAATTTTCAGATTCAATTGATATTCGATTGC
GTTCGATTGAGATTTGATTGCGTTCGATTGCGCGGTGCTGGTGGTTGCGT
CATGGTTCTCGTTCTTATTGGCATTGCTTTGCTAACATTGAAGCGCTTCT
TTTTTTTGCACGGGAAAACATGAAGTTTTGAACCGTGACCTAAGGATTTG
GTCCGAAGCTAGTAAGGGTGGGATAAGAAAAGCAAGAGTTATCATAAGGG
CGGAAGGACCAAAGGACAAATTGCCGAATAAGGTCACGTGACGAATCATA
TATATCCTTTCCATATGGTCGAGAAAGTATGACGAAAGTGGTGGATTGTA
TGTTTCCAGGACATCAGAGGGCATCAAACACTCTTCTCTTCTTTGATTTA
CGATGGAAAATCGGCCTTCTTTAGAGCATAGAGCAATCAAACGCAGTCGA
AAGATGATTAAACCGCAATCGAACGCAGTCGAACGACAATCGAATAGACC
TTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCAGAAAA
ACAATGATAAAACCATGCATAATTATTACAATATGCATGATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTC
GAACAACAATCGAACCAATCGAATATTACTCAGAATTTTGACGTTCGATT
GAGATTCGATTGCGTTCGACAATCGAATTTCAATTGGTCGATTGCGTTCG
ATTTGGTTCGACTGGTTCGATCGTCGATTTCGTTCGATTGAGATCGTCTG
AATACAAGGAAGTGAAAATATGAAATAAAATGTTTTACCTCTGGCATAAG
AAAAAAGTACATAATCCAAATCATGAATATGAAGAAACAGAATCCAGGAA
GAATACCCCATCTCATAAAGTCTTTTTTACAACTTCTCATTACTTTCGAC
CTTTGACTTTGTAGTATTTATCTCGCCATTTGGCTTTCCCAAATTTATTG
ACCATTTGTATCGATGTATGCAGAAGCTTGAACTTCTTTTATTTGAAGGA
AAGTATTTCATTTCATTTGTTCGCACAACTAGAGATGAGCGACTTATCTT
TTCCAATTAACCACCAGACTGTCAGCGTTCTGCTTTGATGTTTCTTCAGC
TGACCAGCTGCCAGCATCCAGGTTTCTTCCTTTTCAGCTTCTGTTTTTCA
CTATTTTCACCGTTTCAATAACTGCTTCTTTCACCTCTATTGAGATCTTA
CTCAAAGTTATTACCAAGGTTACATTTTGGATCTCGGGCACAAAAACATA
TCTTGCTCTACAAACAAGTCTATTTTTCTGATAATTTTCCCGCGCGGTCT
GCACTGATGGATGCAAGATGGCGGGAGAAAAATTCAATTCAATTTTTCAA
TTTCAATTTGTTTATCTTTATGATAGTACGAACGTTAAATATAAATACAA
GTCTGGGAATAAAAATATCCTATATGAGGATTTCTAAGTCATTCACAGTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAATTTAGT
TATTCTTTCATGAACAATTTTTTCAAAGATCTTGTCAAAAATTGGGAGAA
CAGATATTGGCCTGTAGTTTTTTATATCATTTCTAAGTCCACTTTTGAAG
AGAGGAGTTACTTTAGCATGTTTTAAAAGTTCAGGGAAAACACCTGTGGA
TAGGGAGTTGTTTATCATAATAGCAAGAGGATCAGCTAGTAGATCAGCAA
TACCTTTGATAATCCGTGTAGGGAAATCATAAATATCCTTGGCTTTATTA
CTGTTTATGTTGTTAAGGTGTGTTAAGACTTCATACCTATTGGTTCGTTG
GAAAAAGAAGCTAGAGTTGTTATACTGCATCCTAGTAAGGTAGTTTTTGT
GTTTAAGAGTTGTGTTTTTAGGAATTTTTTTGAGAAGATTTGGAGCAACC
TCTGAAAAGTATTTATTAAAAGCTTCACTAATCTGATGAGAGTCAGTAAA
TGTTTTATCTTGATGAGTCATAGTTCTTGGGTAATGATTGGTCTTATTTC
TACCAAGGAAGGTGTTGATATTTTTCCAAAATTTTTTGATGTCATTCTTT
GATTGTGTAAATTTGTTTTTGAGGTAGATGAATTTTGCTTTACGTATGTC
TTTGTTTAACTCTCGCAAGATCTCATGATATTCTTTGAAAATTTGTTGGT
CTTTGTCTTTCATAAACTGCCCATATAGTGCATCTTTTATATTTATTTTG
TTAAGAATCTTATTGGTCATCCAGGGGTTTTTTTCTTTTCTTCTTTGATT
TTTTGTCAATAGTTTAAATGGGGCATGTATGTCAAATAAAAGATTCATGC
CTTTATGAAAAAATTCATACATTAGGTTAGCATCTTCCATCTGAAGGAAT
TTGTTGGTGAAGTCAATATTTGAAAGATCTTCCCTAAAGCGTAAGATATC
AAAATCAGAGAAGTCTCTTTTTGATATTTTTTTAAATTTTTGTGTTATTT
TATTATCAGAATGAGGTACAAAAAGGAAATTTGGCAAATGATCAGTGATA
TGAGGAATTAAGTTACCACTGATACATTCATTGGAAATGTCGTTATAAAA
AATATTGTCGATAAGAGTGTGAGAGTTACCATTAAATCTAGTTGGTTGGA
TTATGTATGGAAGAAAATTAAATGAAACCATCTTGTCAAAGAAATTACTT
GTGTGACGATGAGATTCACAGTTCATTAAATTTATATTGTAATCTCCCAT
AATAATAACCTTCTTATCTTCATTTTTTATTCTTTCAAGAACTCTTTTCT
CAAACTCATCATTGAAAATTTGTATTTTGTTATCAGGATGTCTATATACT
ACCCCTACAAGCATCTTACAGTCAAGTTCAATAAAAAGACATTCAAAATC
ACAATTCTTACCTGTTGATGAGAAAGTTAAATCAAAAGCATGGAACTTGC
AATTACCAGGTACGACAAATATTCAAATAAAACCAGAACCATCAGCAGAT
CAGGTAAATTTAATGTAAGTGTTTGAATTTAAATTTGAAATAGGCTTTCT
GACATTGAGTGTATTTTAATCCAGACTCTCTTCCTTCCCTTCCCACAAAC
AATCGATAAACCAATCGATTGATTCCAGTCCAGGCATGCAGCAGGGGGGT
CGTCAGCATGTCACTAGTCCGACACTTTCTGGTCCGACAGTATAATAGTC
CGAATCTATAAAATAAATTGTTGACGTCAAATACAAAACTGAACGGTTGT
CGTCTGAAAAATGCACAAAGATGGCGGAAAAAATTCAAGAAAATAATCAA
AAATCACCATCAATAAACGACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033448XLOC_033448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052966-exon-scaffold_222-1575043694:296935..297300TCONS_00052966-exon-scaffold_222-1575043694:296935..297300Clytia hemisphaericaexon
TCONS_00052966-exon-scaffold_222-1575043694:291027..291514TCONS_00052966-exon-scaffold_222-1575043694:291027..291514Clytia hemisphaericaexon
TCONS_00052966-exon-scaffold_222-1510915933:296935..297300TCONS_00052966-exon-scaffold_222-1510915933:296935..297300Clytia hemisphaericaexon
TCONS_00052966-exon-scaffold_222-1510915933:291027..291514TCONS_00052966-exon-scaffold_222-1510915933:291027..291514Clytia hemisphaericaexon
TCONS_00052966-exon-scaffold_222-1491911889:296935..297300TCONS_00052966-exon-scaffold_222-1491911889:296935..297300Clytia hemisphaericaexon
TCONS_00052966-exon-scaffold_222-1491911889:291027..291514TCONS_00052966-exon-scaffold_222-1491911889:291027..291514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:291027..297300 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295315	0.527904	0.44683	1.33423	1.54937	0.962726	1.36425	1.11695	0.924627	0.875925	2.18638	0.615125	1.25993	1.61432	0.196924	0.16759	0.154937	0.327395	0.432866	0.489483	0.512272	0.780381	0.20948	0.117675	1.12585	1.55447	0.0816036	0.160984	0.305252	0.186602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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