TCONS_00052968 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052968
Unique Name	TCONS_00052968
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2552

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_222:341904..347697-

transcript sequence

>TCONS_00052968 ID=TCONS_00052968|Name=TCONS_00052968|organism=Clytia hemisphaerica|type=transcript|length=2552bp
CTTACAATCGCTCCTTAGGATTGTAAGCTTAAAAGCGAAATCGGCGCGCC
ATTCTTTTGGTATATTTTTTTGGTGAagtgaaaaattgtaaaaagattCT
TTTAAGAAGATATTTTGAATCAGATATCTTTGTGAAGAAGTTTTATAGTT
TTCACTTTATTCAAATATGATGAAGATTTTTGTATTTCTTTGTATGATTG
TGTTCATACGCAGTCATCCTTTGAACCATCCAGGGGAAGAGAATCCAGCA
TTTGACTACATCAATGATGCTAATAAAGATCTCGATAAAGAACATTTCGA
AGAAGGTGATATTGTCAAAGTGCAAAACGCTGCTTTGAAAAAAGACTGGG
GTCAATGGCCAAACGGCATTGTTCCTTACACCATCTCAACTGTTTATGAC
TCAGTGGAGAAGAACAAGATTCGTGCTGCAGTCAATAAGATCCAGCAAGC
AGCTCCTTGTATGAACTTTGTGGAATATGGATATCGAGCATCAAATGTAC
CAAAGAATCACGTTGAAGTCATCAGAAGTGGAGGTTGCTGGTCAATGGTT
GGCATGACAGGAGGTAGACAAAGTCTTTCCATCGGAAATGGATGTTTATG
GGAGGGAACAATCATTCACGAGTTTCTTCATGCTATTGGATTTTACCATG
AACAAAGTCGACCTGATCGTGATCAATACGTTGATATCATCACCAAAAAT
ATCGTTGGAGgtcGTGAGCACAATTTCAAGATTGCATCGAGGATCAACAG
TCTTGGTGTTGAATATGATCGAGTTTCTGTTATGCATTATTCAAAagGAG
CTTTCAGCAATGGTAATGGAAACACAATCGAATGGAAAGCTAACCCTAAG
TTATCACTTGGTGGAAATAAGTTATCTGAGAAAGATATCATgcaaatcaa
tttgaaatactGCGGTGACGTCAAACCTACCactacaactacaacaacca
ctAAAAAACCAACAACCACAACAAAAAAACCAACGACCACCACAACAACT
ACAACGACCACTACTAAAAAGCCAACGACCGCTACCTCAACAACGAAGCG
CCCAACAACTACAACGACCACCAAAATGACAACCACAACACAACAACCAG
GACAAGCATGTGGAGACCGAATGGGATTTTGCATTGCCGTTCAGTTCAAC
AAAGGCTTATGCCGTTCGTATAACTATAAATACAACTGCCTCCGATCGTG
TGGTTCCTGCAAAGGTcctgaaactgaaaaatgtaTGAACCTGAAAGATA
CAAGATATGATTGTCAATCAAGAGCTAAACGCGGAGAATGTCAATCTCGA
TATGGATCTCAACGTTGGGAAATGAAAACTGAATGCCCCCGTGTTTGCTG
CGATCGTGGAGAACTCTACAAACGTCCTCAATAAGAAAAAGAGGCAGTAA
AAATAATAACCTAATTTTGATATACAAAGACGAGGTCTCAATTTCATGCA
TCAGCAAAAATACtaaacaagaagccggagcggcgtgaaggtccagctga
cgtggcactAACCGAATttcgttcgtaccgggttccttaagtgacgcaaa
aaaatttccttcctatcctccactctgagcttctattctttaaCACTGtc
tttgtattgctaagttttgaaagtttttgatgcatttcccgaaatttcaa
aacttttgccgctgatgggatttgaacccactatatacaacGCACCTATG
ATAAGACCACCAGCGCgataaccactcggccatcgagtctCAACTGCAGT
AAGGAGTTCAAAGTTCTTTATAcacatggtatttactccaaactctaccc
gggagctaaaaccctaaccaggggttaactcccatccccaaccctagccc
taaccctacctgaaacaaccctttaatctaccctttaatctaaccgagaa
atttgactctactaccaattcaatccaaaacataggtcaaacatcgcgtg
ggtcggcggggcaaaaattctagatcagtggttggtttagcctggacttg
ttaatttattgcgcgcacaggccccgacaaagacaaaatcttttcgatca
gttgctttttaaacgtccattctgctgcgcgctggaccaataattttttc
ttcgatAATCGACAGTACTAATGATTGCAGCcaacactctctaattcgaa
cctctaatattcaaatctttctataatttgagtTTCTTCAATTCGATTTT
TGGTCTCTTGAAAATTAAATTAGAGAGAGCCAGCTATGTAAAGGTTTCAG
TAACACCAGctttttgtaacattttgaaaAGGCAACCTTTCAAAAATACG
TTCAAATTACGTACATTTATCGACCATAGCATCCTTGAAGACTCAATCTA
ATACGTTCACAAAATTCTAAGACaagttcaaaattcaaaatattggagca
attaaaaataaaaataaaaaagcacttttagctattgttctttttatttt
acattttgtttcaatattttttattgtaataTTTATTACATTATTTATTG
CTAGGGGTTTATTTATTCCGAAAAGGTTaggtatttttgaattattttag
tg

Run BLAST on NCBI

transcript from alignment at scaffold_222:341904..347697-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052968 ID=TCONS_00052968|Name=TCONS_00052968|organism=Clytia hemisphaerica|type=transcript|length=5794bp|location=Sequence derived from alignment at scaffold_222:341904..347697- (Clytia hemisphaerica)
CTTACAATCGCTCCTTAGGATTGTAAGCTTAAAAGCGAAATCGGCGCGCC
ATTCTTTTGGTATATTTTTTTGGTGAAGTGAAAAATTGTAAAAAGATTCT
TTTAAGAAGATATTTTGAATCAGATATCTTTGTGAAGAAGTTTTATAGTT
TTCACTTTATTCAAATATGATGAAGATTTTTGTATTTCTTTGTATGATTG
TGTTCATACGCAGTCATCCTTTGAACCATCCAGGGGAAGAGAATCCAGCA
TTTGACTACATCAATGATGCTAATAAAGGTTGGTATACACGACTTTGTTT
CATTACTTAAATACCTAATTTATTTGTTTTATACCAGTTCACACTTTCGA
TCTTCTTGTTGATAGACTCTGCAATTTGTCTGATAGTGTCAATGCGTATT
GGCCAATCGTTATATGGACGTTGTGAACGTTAAATAAACGTTGAAACAAC
GCTGTGTGCCAGCTGGGTTCAATAAGCCTATTTTGAACTTTAATATGTTT
TTTTTCTCCATTTAGATCTCGATAAAGAACATTTCGAAGAAGGTGATATT
GTCAAAGTGCAAAACGCTGCTTTGAAAAAAGACTGGGGTCAATGGCCAAA
CGGCATTGTTCCTTACACCATCTCAACTGTTTATGGTAAGTATATTTTCA
ATAATAAATGAGCAATTGTTCAATCATAAAACTATCAAGGTTACTTTTTA
AGACATTTTTATATCAACGTTACATTCCAATACCACCTCGTTCCATTGAC
ATTTTGGTCAAAATATTTTGAGAATTTTGGTTAATTCCACGTTTTTAGCA
ATTTAAAGTTCGGGCGAGAAAGTCACTTTTGGTAAATTGATAAATTTATT
CGGGTTTATAAACTTCCAGGCTATATTCTGAGCCCTATTGGACCATTCTT
GGACTTTTGGATACTCAGATCCTAACGTTTTAAGTCATAAGTCTAGTGCT
AAAACTCAGAGTTAAAATTTTACCCCTCCAACCTAATTTAGAGTGCTTCC
TAATCGTTTGGGGTTGTAAGATTTCGTGTTGGAATTTCCCTTTTTTCTCA
AATATTATGACTTTGATGGTAACCAACAAAAATTACCGAAATTACTTTTT
TTCATCGCCAAGAACATTGTTATAGGAGGGGGGTTATGATTGGATACAAT
GTATATCCCCATTGAGTTAACTTGATCTTTCTTTCTGTCTATTTCAGACT
CAGTGGAGAAGAACAAGATTCGTGCTGCAGTCAATAAGATCCAGCAAGCA
GCTCCTTGTATGAACTTTGTGGAATATGGATATCGAGCATCAAATGTACC
AAAGAATCACGTTGAAGTCATCAGAAGTGGAGGGTAGGGAGAAATTTATG
ACCAGTTCTGTTTTAACAAGTGCTTGAAAGTAATTTTAAAAATCTCTGTC
AATTTGTCCCTGTGTAACAGACCCGATGGGCCCTATCCCACTGGAAAATT
TGGTCAAAATTTCGTCCCAACCAGTAATAGGTCCACTACAATTTCACCCT
ACTGGAAAATTGACTTTCATCCTCATTTAAAACTCCCCAGCCGGCACACA
ACGTCAAAACAACGTCCATTTGACATTCTTAACGTCCAAATAACGTTATT
TAAACGTTAAAACAACGTTGCGTGCCAGCTGGGTCAATATAACAAATTGC
GCTTCAAAACATCCCCCACTGGTTCTTTTAGCTTGGAACAATAAAATTTC
AATCCACATTGGTATTTTGATAAAACATTTATTTCATACCTACTGTGGGA
AGAAGTTCTATATCGGGAAAGTGAGACAGGAGTGTATTGATCCGATGCTG
AACTTCATCTTTTTTTCCCTAGTTGTTGGTCTATGGTTGGTATGTTTTAT
AAAGAAAAATTCTCTGTAATGGGCTCTTCCAGAAAAAATTCGTACATGGG
GGGTGGAGGATATTTTGTCCGGGGGGGGAGCAAAAAATCATCAAAATTTG
CCTTGTCCGGGGGGTAAATTTACTCTGTCCGGGGGTAATTTGGTGTGTCC
AGGGGGTCAGCAGATGCTTGTCTGGGGGGTAAAACCTATTGTCCGGGGGG
CCAAAAGTCACCCTGTTCGGGGGGTAAATTACTAAAAATTGTTATATCCT
CCACCCCCCATGTACAATTTTTTTCTGGAAGAGCCCAATAATATGTTTTA
AGTCAGATATCGAATCTCATACTCTTTATCACCTGATCTTACTTTCCCCT
AGTTGCTGGTCAATGGTTGGCATGACAGGAGGTAGACAAAGTCTTTCCAT
CGGAAATGGATGTTTATGGGAGGGAACAATCATTCACGAGTTTCTTCATG
CTATTGGATTTTACCATGAACAAAGTCGACCTGATCGTGATCAATACGTT
GATATCATCACCAAAAATATCGTTGGAGGTAAATAATTTTGTTCTCTTAT
CTCAAGCCTTGATTTTTTATGCAGCCTCGTATATGTGCAACAAACTTTTC
AGTCAATATTATTTTTAGAACTATTGGGCTATTCCAGAAATAGTTTGTAC
CCCTTATGCTGAGGAGATGTGACGTCCAGGGTGGTGTAAGAATCCAAGGT
TGTCAATAAAATGAGATGGGAAATCCAGGTGGTTCAAAAGATGCGAAAAA
AAATCCAAGAAATTCCTGGAAAAAATAATGAAAATTAAAGAAAAAATTCA
AGGGGGATTCACCTTCCCAAAAAATGATCTCCACAATATAGGGGGTTCAT
TTTTTTCCGGAATAACTCATTTAGAAGTATTGGAGATCCACTGCCTCTTT
CGTCCCCATATGCGATCTGTCTCTAATAGACGATATCGGCTTAACGTGAA
AACTCAGATTTGACCCCCGAAAATTACCAACAATGCTTTGAGCGGAAAAA
AAGTTCACGGTGAAATTGTGGGCAAATGGGAAAATCTGAGTTTTCATTAT
AAAAACGTGTTTTTGAACATGAGAATCCTGTAATTGTTAATCAGGAAAAA
TCGTTAGTTATTTGGGTTATAAGTTATTTTGCAAGTAACTTTATTGTATT
TTTTTTATTTTTTAAGGTCGTGAGCACAATTTCAAGATTGCATCGAGGAT
CAACAGTCTTGGTGTTGAATATGATCGAGTTTCTGTTATGCATTATTCAA
AGTAAGATATTGCCAACATTGGTTCTTACATGATCTTATTAAAGTCTGTT
TTCTCCTTTCAGCTTTTATTTAACCAAAATCATGTCTAAAGAATCTCTAT
TACTATTACCTAGCTAGCACACAACGTTGTTTTAACGTTCAAATAACGTA
ATTTGGAAGTTATGAATGTCAAATGGACGTTGTTTTGACGTTGTGTGCCA
GCTGGGTATTACGGAGAAATTATTTGAGCTTATCAAACTAAATTTTTCTT
CTTTCAGAGGAGCTTTCAGCAATGGTAATGGAAACACAATCGAATGGAAA
GCTAACCCTAAGTTATCACTTGGTGGAAATAAGTTATCTGAGAAAGATAT
CATGCAAATCAATTTGAAATACTGCGGTGACGTCAAACCTACCACTACAA
CTACAACAACCACTAAAAAACCAACAACCACAACAAAAAAACCAACGACC
ACCACATCAACCACAACAACCACCACTAAAAAACCGACGACCACCACTAA
AAAACCGACGACCACCACTAAAAAACCGACGACCACCACTAAAAAACCGA
CGACCACCACAACAACGACAACGACCACCACTAAGAAACCAACGACCACA
ACAACTACAACGACCACTACTAAAAAGCCAACGACCGCTACCTCAACAAC
GAAGCGCCCAACAACTACAACGACCACCAAAATGACAACCACAACACAAC
AACCAGGACAAGGTAAGAATATCTGAATCTTTCGGCAATCTTCGAATCAA
AAAATTTTCTCTAAAAGTTGAAGAGATTATTGCGTTGAATCTGAATTGCA
GACCTCTATGTATACTCCTAAATAAATAAATAATAAACAATTTCTTAAGA
GAATGAGCAGAAACCTAAATTTATCCTGTAATAGCTTACACAATATTCGA
TCTTGAGCTAGAATCTCATAATTTACAGTGTAAATATGCCTTATTATGAT
AAAGTACCTTTGGCTTACCAGTCTGTAACCGAGCCTGTTGCAAGTGTCTC
CAGCACACTCATGAAATATATGTGTAAACTATTGCCGACGGCAAATTTCA
CCCAAGAGACACAAAATACGATTAATTAATATTTCCTTTACCGGCCCTAG
ATGCAAAGTTATCATATGAACTCACTACCCTAGAATCAAATGCTCGCCAG
AGTTAATTACTTAATTTCCCAGCTTAACAAAAGAGTTGTACTTTGTACTC
GGCCACTTTAAAATATCTGATTTAAAATTTTTATTTCTGTCTATTCAGCA
TGTGGAGACCGAATGGGATTTTGCATTGCCGTTCAGTTCAACAAAGGCTT
ATGCCGTTCGTATAACTATAAATACAACTGCCTCCGATCGTGTGGTTCCT
GCAAAGGTCCTGAAACTGAAAAATGTATGAACCTGAAAGATACAAGATAT
GATTGTCAATCAAGAGCTAAACGCGGAGAATGTCAATCTCGATATGGATC
TCAACGTTGGGAAATGAAAACTGAATGCCCCCGTGTTTGCTGCGATCGTG
GAGAACTCTACAAACGTCCTCAATAAGAAAAAGAGGCAGTAAAAATAATA
ACCTAATTTTGATATACAAAGACGAGGTCTCAATTTCATGCATCAGCAAA
AATACTAAACAAGAAGCCGGAGCGGCGTGAAGGTCCAGCTGACGTGGCAC
TAACCGAATTTCGTTCGTACCGGGTTCCTTAAGTGACGCAAAAAAATTTC
CTTCCTATCCTCCACTCTGAGCTTCTATTCTTTAACACTGTCTTTGTATT
GCTAAGTTTTGAAAGTTTTTGATGCATTTCCCGAAATTTCAAAACTTTTG
CCGCTGATGGGATTTGAACCCACTATATACAACGCACCTATGATAAGACC
ACCAGCGCGATAACCACTCGGCCATCGAGTCTCAACTGCAGTAAGGAGTT
CAAAGTTCTTTATACACATGGTATTTACTCCAAACTCTACCCGGGAGCTA
AAACCCTAACCAGGGGTTAACTCCCATCCCCAACCCTAGCCCTAACCCTA
CCTGAAACAACCCTTTAATCTACCCTTTAATCTAACCGAGAAATTTGACT
CTACTACCAATTCAATCCAAAACATAGGTCAAACATCGCGTGGGTCGGCG
GGGCAAAAATTCTAGATCAGTGGTTGGTTTAGCCTGGACTTGTTAATTTA
TTGCGCGCACAGGCCCCGACAAAGACAAAATCTTTTCGATCAGTTGCTTT
TTAAACGTCCATTCTGCTGCGCGCTGGACCAATAATTTTTTCTTCGATAA
TCGACAGTACTAATGATTGCAGCCAACACTCTCTAATTCGAACCTCTAAT
ATTCAAATCTTTCTATAATTTGAGTTTCTTCAATTCGATTTTTGGTCTCT
TGAAAATTAAATTAGAGAGAGCCAGCTATGTAAAGGTTTCAGTAACACCA
GCTTTTTGTAACATTTTGAAAAGGCAACCTTTCAAAAATACGTTCAAATT
ACGTACATTTATCGACCATAGCATCCTTGAAGACTCAATCTAATACGTTC
ACAAAATTCTAAGACAAGTTCAAAATTCAAAATATTGGAGCAATTAAAAA
TAAAAATAAAAAAGCACTTTTAGCTATTGTTCTTTTTATTTTACATTTTG
TTTCAATATTTTTTATTGTAATATTTATTACATTATTTATTGCTAGGGGT
TTATTTATTCCGAAAAGGTTAGGTATTTTTGAATTATTTTAGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033450	XLOC_033450	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_222	supercontig	scaffold_222:341904..347697 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0604003	0.0675257	0.100101	0	0	0	0	0	0	0	0	0	9.84719	1.07602	2.89484	28.2354	0.84494	0.117439	1.18156e-05	0.243616	0	0.273484	0.054124	0.0545171	0	0.498392	0	0	0.394639	0.180119

Blast

[Close]

BLAST of TCONS_00052968 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.188e-31
Identity = 93/259 (35.91%), Postives = 138/259 (53.28%), Query Frame = 2

Query:  170 MKIFVFLCMIVFIRSHPLNHPGEENPAFDY-INDANKDLDKEHFEEGDI----VKVQNAALKKDWGQWPNGIVPYTISTVYDSVEKNKIRAAVNKIQQ--AAPCMNFVEYGYRASNVPKNHVEVIRSGGCWSMVG-MTGGRQSLSIGNGCLWEGTIIHEFLHAIGFYHEQSRPDRDQYVDIITKNIVGGREHNFKIASR--INSLGVEYDRVSVMHYSKGAFSNGNGNTIEWKANPKLSLGGNKL--SEKDIMQINLKY 910
            +  F+FL  ++ I         + +   D  I D N+ L  + FE GDI     +++N+ + + + +WP+ I PY +    DS+E N     +N  ++     C++F  +         N++ V +  GCWS VG    G+Q LSIG  C    T+ HEFLHA+GF+HEQSR DRD YV I+   I+ GREHNF   S    +SL V YD  SVMHYSK AF NG   TI  + +    + G ++  S+ D++++N  Y
Sbjct:    6 LSWFLFLDALLVISGLATPENFDVDGGMDQDIFDINEGLGLDLFE-GDIRLDRAQIRNSIIGEKY-RWPHTI-PYVLE---DSLEMNAKGVILNAFERYRLKTCIDFKPWAGET-----NYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253

The following BLAST results are available for this feature:

BLAST of TCONS_00052968 vs. Swiss-Prot (Human)

BLAST of TCONS_00052968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	1.188e-31	35.91	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00052968 (transcript) - C. hemisphaerica