TCONS_00052981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052981
Unique NameTCONS_00052981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052981 ID=TCONS_00052981|Name=TCONS_00052981|organism=Clytia hemisphaerica|type=transcript|length=1067bp
GCTAATCTAAAATTTGGTGGTCGATCTAGTTTCGACATACAGAGAGGTTT
AAATCACAGAAAATCCATCAAGGCCATGACAAagaattcttttgaatttg
TGGAAGGGATCGAATGCCAACTCTGGTTTCTTTCGGATCTTTCGCAGACT
ACATTAGCGAATATAGAGCTACTTTTTTTTGAAACGATTCGGAACAACCC
GCCGCTGTTTTAACGTGCGTGCGATTGAGGACAGTTATAGTGCTGATTTA
CTGTCGTCCTCAATCATTTAGGATCTAGACGAATCCAAAACTAGCCGTCT
TCGCCACAGGACAAACTCCATACATAAAGTCGCTaccgATTGTGGATGGT
TCAAAGGATAGGAAGTGTTCCAACTCCTTCCTGCACTTCCGTCATTCGAG
ATGTTGAACAGCATAAGTACAACTTTTGAACTTCTGGTTCAATGATGGTC
GTTTCCATTGGTGTATTCGCAGAACTTGCTTCGTGGACACACTACGTGGT
CACTTTCTCTCGTCTGGGAAGGCCATCTCTCATCAACGAGAGCCTATGCT
GCTgttctttcaaatttcaattctattttttcGGTAGCTGCATAAAAAAT
CATCAGTGTAACCAGAGCTCTCTTATAAGAAGCAGCAAACTTTTTTGAGG
CttagctgttcttattttttggcactatGAACCTTAAGATATTCTGATCC
TGCTCTTGTTTTAGGGAAAAATTTAAATAtcattcttcttaatttgttct
taacatttgacgctttaaaatttcattGTTGTATTGAAAGATATGGAGTG
CATTCAGATTGGATTTCCCCGAGTTCTCGTTAAGTTTATTTTAGGTGTTT
TAAAAtccattttgtttttctgactgttttattttttataagatttctAA
GATTTACCCAGATGATACATGTAGCAAATTTAACCAGATTTTATTTATAT
cgatattttataattttaattcCTATTATTTTATTGACAGATTATAAGAT
TTTacgagatttttatttttttgaattttggattgAAATTTTTAGTTTAT
AAATAAGTATAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_222:545811..547047-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052981 ID=TCONS_00052981|Name=TCONS_00052981|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at scaffold_222:545811..547047- (Clytia hemisphaerica)
GCTAATCTAAAATTTGGTGGTCGATCTAGTTTCGACATACAGAGAGGTTT
AAATCACAGAAAATCCATCAAGGCCATGACAAAGAATTCTTTTGAATTTG
TGGAAGGGATCGAATGCCAACTCTGGTTTCTTTCGGATCTTTCGCAGACT
ACATTAGCGAATATAGAGCTACTTTTTTTTGAAACGATTCGGAACAACCC
GCCGCTGTTTTAACGTGCGTGCGATTGAGGACAGTTATAGTGCTGATTTA
CTGTCGTCCTCAATCATTTAGGATCTAGACGAATCCAAAACTAGCCGTCT
TCGCCACAGGACAAACTCCATACATAAAGTCGCTACCGGTAAGGTTCTAA
TTGGACTATATCCCAATTGTGGACGACATTTTAGGGGTTAGAAGTGCGAA
TTATTCCAATTACATAAACTTGCCACTATTAATGTGACGCAGAGGTAAAC
ACATGTACGACTCATTCATCTTGAGTTTTCACGCTAAAATATCTTCATCT
TTTCACAGATTGTGGATGGTTCAAAGGATAGGAAGTGTTCCAACTCCTTC
CTGCACTTCCGTCATTCGAGATGTTGAACAGCATAAGTACAACTTTTGAA
CTTCTGGTTCAATGATGGTCGTTTCCATTGGTGTATTCGCAGAACTTGCT
TCGTGGACACACTACGTGGTCACTTTCTCTCGTCTGGGAAGGCCATCTCT
CATCAACGAGAGCCTATGCTGCTGTTCTTTCAAATTTCAATTCTATTTTT
TCGGTAGCTGCATAAAAAATCATCAGTGTAACCAGAGCTCTCTTATAAGA
AGCAGCAAACTTTTTTGAGGCTTAGCTGTTCTTATTTTTTGGCACTATGA
ACCTTAAGATATTCTGATCCTGCTCTTGTTTTAGGGAAAAATTTAAATAT
CATTCTTCTTAATTTGTTCTTAACATTTGACGCTTTAAAATTTCATTGTT
GTATTGAAAGATATGGAGTGCATTCAGATTGGATTTCCCCGAGTTCTCGT
TAAGTTTATTTTAGGTGTTTTAAAATCCATTTTGTTTTTCTGACTGTTTT
ATTTTTTATAAGATTTCTAAGATTTACCCAGATGATACATGTAGCAAATT
TAACCAGATTTTATTTATATCGATATTTTATAATTTTAATTCCTATTATT
TTATTGACAGATTATAAGATTTTACGAGATTTTTATTTTTTTGAATTTTG
GATTGAAATTTTTAGTTTATAAATAAGTATAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033455XLOC_033455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052981-exon-scaffold_222-1575043694:546710..547047TCONS_00052981-exon-scaffold_222-1575043694:546710..547047Clytia hemisphaericaexon
TCONS_00052981-exon-scaffold_222-1575043694:545811..546539TCONS_00052981-exon-scaffold_222-1575043694:545811..546539Clytia hemisphaericaexon
TCONS_00052981-exon-scaffold_222-1510915933:546710..547047TCONS_00052981-exon-scaffold_222-1510915933:546710..547047Clytia hemisphaericaexon
TCONS_00052981-exon-scaffold_222-1510915933:545811..546539TCONS_00052981-exon-scaffold_222-1510915933:545811..546539Clytia hemisphaericaexon
TCONS_00052981-exon-scaffold_222-1491911889:546710..547047TCONS_00052981-exon-scaffold_222-1491911889:546710..547047Clytia hemisphaericaexon
TCONS_00052981-exon-scaffold_222-1491911889:545811..546539TCONS_00052981-exon-scaffold_222-1491911889:545811..546539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:545811..547047 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.156093	0.124504	0	0.696079	0	0.167315	0.212815	0	2.39832	1.67021	0.145323	0.0681989	0.427591	0.471439	0	0.115534	0	0	0.0696461	0.0660882	0.250441	0.5741	1.02007	0.146207	0.0833352	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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