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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052986 ID=TCONS_00052986|Name=TCONS_00052986|organism=Clytia hemisphaerica|type=transcript|length=1300bp
NNAGGAAACAGCGTTGACGGCGGATGTTCCTGGGTAATACTCACGAGAAT
TAAGAACAGTTGCTTTAGCGTTTTGGTTATTGGAAATTCGATCGATAGTA
ATTTGTCCATAGTTTGATTATATAATTAAAAATCTCGTTATCGATAGACC
AATTATCTGTGTCGGTAGATTTGGAAATTAAATCTGCTGTTTTATTCATG
TCCCTTGGTATCCAAGTAGAGTAAATTCCGACGTTATGAGATAAGCAgat
gttgaaaaatttctattgcaagATTTTGTAGGTGTTGTTTTGTGCTACCG
CGGCTGATTATTTTACAAACATCGTTGTCCGTGAACCACTCAATTATTTC
GTTTTCGAGAAGTTTGGAAAGGACGTCAAAAATATTTAACTGCGAGAAGT
TCACGACAAGTTGAGCTAGTTGTATTTCATGTCTACCAAAATTTCCTTTT
GCTATGNATTTAACTGCGAGAAGTTCACGACAAGTTGAGCTAGTTATGTA
TTTCATGTCTACCAAAATTTCCTTTTGCTATGATGTTTCCTAACTTTTCT
ACCGCGTAACCTCCATAGCCTGTACCACTTGCGTCCGAAAAGATGACCTT
CGTAATTCTTGGTTTGGTTTTAATTCTAAaagcttttacgttttttaaat
TGGGTTGCCAAAATTGAAGTTCTTGAATAACGTCAAAATTTATTAATCAT
CTTTTATCCAAGTGAGGTAAATTAGCAAAACGAAGGAGAGAAGTTTTGAT
AATTTGTTGCATcatctatttttgacatttattATTTAAGAAGGTAAAAC
GGCACAGTTGAAATAGAATAGAAGATCAGGTACATTTATATCATCAGCTC
TCATTAATACTAATCTAATTACAACAAGACAAAATTGtaatcaattttta
aaactaacGCAACGTAAATTAGctactgtatttcaaaagttgaaaaaatt
gttCTGAATATCtgaaaatcttctattttttgTTAAAGTTATTTTCCATC
CCTTGACGATTTAGAATTTGAATTGGACGACGAACTTTTTGTTGCTGTTG
GTGAGGACATTAACTTTGTCGAGTGGGCCAAAGGTGGCGAAGATTCAGAA
AAAGGACAGTGGCTGACGTAGTGCCCTACTCTTTTGCATGAATAACAGAC
CACTTCATCCATACGGCTCCTTTGTTCATTTCTAGATTTGATTGCCTTGG
AGTATTCTCCATCAGGTTCCTCTATTCTTGGCTTTTTATATATACGTTCT
TTAACTTGCTCTGCATTTTTAATAGCCCTCTTAAGCCTCTTTTCCTCCAC Run BLAST on NCBI protein sequence of TCONS_00052986-protein >TCONS_00052986-protein ID=TCONS_00052986-protein|Name=TCONS_00052986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
VEEKRLKRAIKNAEQVKERIYKKPRIEEPDGEYSKAIKSRNEQRSRMDEV
VCYSCKRVGHYVSHCPFSESSPPLAHSTKLMSSPTATKSSSSNSNSKSSR
DGK Run BLAST on NCBI transcript from alignment at scaffold_222:178529..179828 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052986 ID=TCONS_00052986|Name=TCONS_00052986|organism=Clytia hemisphaerica|type=transcript|length=1300bp|location=Sequence derived from alignment at scaffold_222:178529..179828 (Clytia hemisphaerica)
GTGGAGGAAAAGAGGCTTAAGAGGGCTATTAAAAATGCAGAGCAAGTTAA
AGAACGTATATATAAAAAGCCAAGAATAGAGGAACCTGATGGAGAATACT
CCAAGGCAATCAAATCTAGAAATGAACAAAGGAGCCGTATGGATGAAGTG
GTCTGTTATTCATGCAAAAGAGTAGGGCACTACGTCAGCCACTGTCCTTT
TTCTGAATCTTCGCCACCTTTGGCCCACTCGACAAAGTTAATGTCCTCAC
CAACAGCAACAAAAAGTTCGTCGTCCAATTCAAATTCTAAATCGTCAAGG
GATGGAAAATAACTTTAAcaaaaaatagaagattttcaGATATTCAGaac
aattttttcaacttttgaaatacagtagCTAATTTACGTTGCgttagttt
taaaaattgattaCAATTTTGTCTTGTTGTAATTAGATTAGTATTAATGA
GAGCTGATGATATAAATGTACCTGATCTTCTATTCTATTTCAACTGTGCC
GTTTTACCTTCTTAAATaataaatgtcaaaaatagatgATGCAACAAATT
ATCAAAACTTCTCTCCTTCGTTTTGCTAATTTACCTCACTTGGATAAAAG
ATGATTAATAAATTTTGACGTTATTCAAGAACTTCAATTTTGGCAACCCA
atttaaaaaacgtaaaagcttTTAGAATTAAAACCAAACCAAGAATTACG
AAGGTCATCTTTTCGGACGCAAGTGGTACAGGCTATGGAGGTTACGCGGT
AGAAAAGTTAGGAAACATCATAGCAAAAGGAAATTTTGGTAGACATGAAA
TACATAACTAGCTCAACTTGTCGTGAACTTCTCGCAGTTAAATNCATAGC
AAAAGGAAATTTTGGTAGACATGAAATACAACTAGCTCAACTTGTCGTGA
ACTTCTCGCAGTTAAATATTTTTGACGTCCTTTCCAAACTTCTCGAAAAC
GAAATAATTGAGTGGTTCACGGACAACGATGTTTGTAAAATAATCAGCCG
CGGTAGCACAAAACAACACCTACAAAATcttgcaatagaaatttttcaac
atcTGCTTATCTCATAACGTCGGAATTTACTCTACTTGGATACCAAGGGA
CATGAATAAAACAGCAGATTTAATTTCCAAATCTACCGACACAGATAATT
GGTCTATCGATAACGAGATTTTTAATTATATAATCAAACTATGGACAAAT
TACTATCGATCGAATTTCCAATAACCAAAACGCTAAAGCAACTGTTCTTA
ATTCTCGTGAGTATTACCCAGGAACATCCGCCGTCAACGCTGTTTCCTNN
Coding sequence (CDS) from alignment at scaffold_222:178529..179828 >TCONS_00052986 ID=TCONS_00052986|Name=TCONS_00052986|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_222:178529..179828 (Clytia hemisphaerica)
GTGGAGGAAAAGAGGCTTAAGAGGGCTATTAAAAATGCAGAGCAAGTTAA
AGAACGTATATATAAAAAGCCAAGAATAGAGGAACCTGATGGAGAATACT
CCAAGGCAATCAAATCTAGAAATGAACAAAGGAGCCGTATGGATGAAGTG
GTCTGTTATTCATGCAAAAGAGTAGGGCACTACGTCAGCCACTGTCCTTT
TTCTGAATCTTCGCCACCTTTGGCCCACTCGACAAAGTTAATGTCCTCAC
CAACAGCAACAAAAAGTTCGTCGTCCAATTCAAATTCTAAATCGTCAAGG
GATGGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052986-exon-scaffold_222-1491911889:178529..179828 | TCONS_00052986-exon-scaffold_222-1491911889:178529..179828 | Clytia hemisphaerica | exon |
| TCONS_00052986-exon-scaffold_222-1510915933:178529..179828 | TCONS_00052986-exon-scaffold_222-1510915933:178529..179828 | Clytia hemisphaerica | exon |
| TCONS_00052986-exon-scaffold_222-1575043694:178529..179828 | TCONS_00052986-exon-scaffold_222-1575043694:178529..179828 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:178529..179828 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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