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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052987 ID=TCONS_00052987|Name=TCONS_00052987|organism=Clytia hemisphaerica|type=transcript|length=1089bp
GCTATTTCTCCTTCTCCGAATGAACAAACAATAAATCGCAATAATAGCTA
CTTTTTGTTTGGTATTTGTCTGCAATAACACTCgtggtaaaaaaaatgtt
taacaaatCAGTAGTAAAATTACAAGTTGGATAAACTCAAATAAAATACA
ACTGAATTTTTGTGACGAAGCGTGTAGCGTAAAACCCCCAGTGGCTGTTT
ATTCTGGAGGAAACATTATCTCCGAACCAATGGCGTCCGTCACCCCGACC
TTCGGAGGTTAAAGGTCTTCCCCCCTTTATGTACAAATTTTTTACTAACG
AAATTATTCCATCTGCAAGTGTTTGACCCTCAAATGTAAGAGATCATAAA
TTTGaattataattattataatgGATTTTTACGAGGTATGAGCTTCATAG
CTtcaaaatgttatcaatctaTTTGTAATTTTCGTTTAAGAAATACCAAA
TTCATCAACTTGATAAAGCACATCCAGGATTCCATGTTTGATAAGTTGTC
GGTGGTGAATGTTGATAAGATCGTTAATCTCTAATGACCGGCGTTTGTTT
TGGTAATCGACCGTCTTAGTATATTCTATTGTATTCCTTGGTGGTTGATC
GTCTGAGCCATTGATTGATCATCTGTTTGAAGTCCAGGAAGAAGCTCTTG
TCCGATTGTTCCAATGtcataaaagtaaagaaagGTTGACCGGAGTATAC
AGGGGCTTATGATTAAATATAGTACgagaaaatctggaaatttcgGAAAA
GTTTGCTAAAGTatgttaaaatgattttgagtgAATGCAATAGCGAGGAT
GATTTAgaattttgaattgtatttaaAGACATACGAATCATAATTATCAC
TTAATGATGCGCATGCATAATTAATTTTCCGTGCGAAATTGTTGAGAACC
TGCTTTGCTTTGTAACGATGACAAAATAGGTAAGCCTCGGGTTTGTAATT
TAATTTGGATAGTGACAAATATTTGCAAAGCCAGTAAATTGGACAGCATT
TTGTTCCTGTCTTGCTAATGAAAACGATATTACCTTCACGAACTTGGTCG
GTTTTTGACTTTGGTAGAAAAACTGTTGCACCGAAGTTG Run BLAST on NCBI transcript from alignment at scaffold_222:181280..182368 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052987 ID=TCONS_00052987|Name=TCONS_00052987|organism=Clytia hemisphaerica|type=transcript|length=1089bp|location=Sequence derived from alignment at scaffold_222:181280..182368 (Clytia hemisphaerica)
CAACTTCGGTGCAACAGTTTTTCTACCAAAGTCAAAAACCGACCAAGTTC
GTGAAGGTAATATCGTTTTCATTAGCAAGACAGGAACAAAATGCTGTCCA
ATTTACTGGCTTTGCAAATATTTGTCACTATCCAAATTAAATTACAAACC
CGAGGCTTACCTATTTTGTCATCGTTACAAAGCAAAGCAGGTTCTCAACA
ATTTCGCACGGAAAATTAATTATGCATGCGCATCATTAAGTGATAATTAT
GATTCGTATGTCTttaaatacaattcaaaattcTAAATCATCCTCGCTAT
TGCATTcactcaaaatcattttaacatACTTTAGCAAACTTTTCcgaaat
ttccagattttctcGTACTATATTTAATCATAAGCCCCTGTATACTCCGG
TCAACctttctttacttttatgaCATTGGAACAATCGGACAAGAGCTTCT
TCCTGGACTTCAAACAGATGATCAATCAATGGCTCAGACGATCAACCACC
AAGGAATACAATAGAATATACTAAGACGGTCGATTACCAAAACAAACGCC
GGTCATTAGAGATTAACGATCTTATCAACATTCACCACCGACAACTTATC
AAACATGGAATCCTGGATGTGCTTTATCAAGTTGATGAATTTGGTATTTC
TTAAACGAAAATTACAAAtagattgataacattttgaAGCTATGAAGCTC
ATACCTCGTAAAAATCcattataataattataattCAAATTTATGATCTC
TTACATTTGAGGGTCAAACACTTGCAGATGGAATAATTTCGTTAGTAAAA
AATTTGTACATAAAGGGGGGAAGACCTTTAACCTCCGAAGGTCGGGGTGA
CGGACGCCATTGGTTCGGAGATAATGTTTCCTCCAGAATAAACAGCCACT
GGGGGTTTTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATT
TGAGTTTATCCAACTTGTAATTTTACTACTGatttgttaaacattttttt
taccacGAGTGTTATTGCAGACAAATACCAAACAAAAAGTAGCTATTATT
GCGATTTATTGTTTGTTCATTCGGAGAAGGAGAAATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052987-exon-scaffold_222-1491911889:181280..182368 | TCONS_00052987-exon-scaffold_222-1491911889:181280..182368 | Clytia hemisphaerica | exon |
| TCONS_00052987-exon-scaffold_222-1510915933:181280..182368 | TCONS_00052987-exon-scaffold_222-1510915933:181280..182368 | Clytia hemisphaerica | exon |
| TCONS_00052987-exon-scaffold_222-1575043694:181280..182368 | TCONS_00052987-exon-scaffold_222-1575043694:181280..182368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:181280..182368 . |
Blast
The following BLAST results are available for this feature:
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