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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052988 ID=TCONS_00052988|Name=TCONS_00052988|organism=Clytia hemisphaerica|type=transcript|length=1318bp
atCTTCAATGTATAATAAATAAGAAGAAGTATTACTATGTCTCTTGTGTC
CCTTTCTGTGTGCAAACAAATGTAAATCCTCGAAACATCCTCCACAGTCT
CTTTTCACGAACACATATTTCGACGCACCACTCGAAACAATCTCTTTCTC
TCCATGTAGCAACGAACTGATTTCTTTATACCAATCTTGATACGATGCAA
ACAAATTGAGCTCGATTGGTTTACTTTCAAAGAACTTACCAGCTCCCCAA
GTCAACTTCCCAGCCGTGGTAATGTGCATTGCGTTGGCGGCTTCATCTTG
CTTCTTCTGGATGATTTCCAATTCTTTGATGAGTTTCAAATTCAACTCGT
TCACTTTGtcttcaatttctgcaaatttCAGCTTGTTCGCGTTCTCCACT
TCAGCCAATTTCAATTTAaacacattttcttttttggctAGTTTCGCTTC
CACTTCAgcaaattttaatttaaactCATTTTCTTTGGCAATCATTTCCT
GGTCTTTCTGGGTCAGTTTCAACGTGTATTCTTTTTGGTTTGATGTTGAT
TCGTTGCCTTTTTCCAACAGTTTGTTTTCATAGGCAGTCTCTAAgtcttt
cattttcaatttgaacTCGTTTTCCCTGACAGTCATATCCTTGTCTTTTC
CAGCTAGCGCCTTGTCTTTTCCAgccatttttttgtcttttccaGCTAGT
TCTTTgtctttttcattaattttgatttggaaTTCATTTTGCTGTTTCAG
CATTTCTTTCTCCATTTCACGATCGACCACGACTTTCTTAGCCTCTTGTT
CATGTGAGGTCTTTAACTTCAAGAGCTCCAGCTCATGGGTTAACGATTGA
TTGTCCTTTTCAAGCTGCATGATTTTTATTTGGTGGTTATTTTCAGATTC
GAGAAACTTGATCTTGTTTTCAAATGTCAATTTTTGAATCTGCTTGTCAT
GGTCTTCTTTAAGTTTCGCTGTCTCAACGGTGCTGTTGTCAACTTTGTTG
GTGACATTTCTACCAGCAGCACTGTGTGCCAAATTCCGATCATCACCATG
TATTGAatccatttttttgtttcaaccTTAGCTAATGTAACTTAGAGTTT
CTATAAACCAGCAATAACACGTACTTCAAAAGAAATCTCGGTTTTTCATT
CaaacttgaaactttctttatgttttgtttgtttctcaAATCTCCTGATC
ACCAATCGTACATATAAAGAAAAGTCTTAAAGCAATAGTAATAACAAGAC
TTTAGAAAGAATATTTGTATTCGTTCAACATcgagtttgttttgttttgg
tatCAAATTCTCCCAAAC Run BLAST on NCBI protein sequence of TCONS_00052988-protein >TCONS_00052988-protein ID=TCONS_00052988-protein|Name=TCONS_00052988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MDSIHGDDRNLAHSAAGRNVTNKVDNSTVETAKLKEDHDKQIQKLTFENK
IKFLESENNHQIKIMQLEKDNQSLTHELELLKLKTSHEQEAKKVVVDREM
EKEMLKQQNEFQIKINEKDKELAGKDKKMAGKDKALAGKDKDMTVRENEF
KLKMKDLETAYENKLLEKGNESTSNQKEYTLKLTQKDQEMIAKENEFKLK
FAEVEAKLAKKENVFKLKLAEVENANKLKFAEIEDKVNELNLKLIKELEI
IQKKQDEAANAMHITTAGKLTWGAGKFFESKPIELNLFASYQDWYKEISS
LLHGEKEIVSSGASKYVFVKRDCGGCFEDLHLFAHRKGHKRHSNTSSYLL
YIED Run BLAST on NCBI transcript from alignment at scaffold_222:235943..237260 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052988 ID=TCONS_00052988|Name=TCONS_00052988|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at scaffold_222:235943..237260 (Clytia hemisphaerica)
GTTTGGGAGAATTTGataccaaaacaaaacaaactcgATGTTGAACGAAT
ACAAATATTCTTTCTAAAGTCTTGTTATTACTATTGCTTTAAGACTTTTC
TTTATATGTACGATTGGTGATCAGGAGATTtgagaaacaaacaaaacata
aagaaagtttcaagtttGAATGAAAAACCGAGATTTCTTTTGAAGTACGT
GTTATTGCTGGTTTATAGAAACTCTAAGTTACATTAGCTAAggttgaaac
aaaaaaatggatTCAATACATGGTGATGATCGGAATTTGGCACACAGTGC
TGCTGGTAGAAATGTCACCAACAAAGTTGACAACAGCACCGTTGAGACAG
CGAAACTTAAAGAAGACCATGACAAGCAGATTCAAAAATTGACATTTGAA
AACAAGATCAAGTTTCTCGAATCTGAAAATAACCACCAAATAAAAATCAT
GCAGCTTGAAAAGGACAATCAATCGTTAACCCATGAGCTGGAGCTCTTGA
AGTTAAAGACCTCACATGAACAAGAGGCTAAGAAAGTCGTGGTCGATCGT
GAAATGGAGAAAGAAATGCTGAAACAGCAAAATGAAttccaaatcaaaat
taatgaaaaagacAAAGAACTAGCtggaaaagacaaaaaaatggcTGGAA
AAGACAAGGCGCTAGCTGGAAAAGACAAGGATATGACTGTCAGGGAAAAC
GAgttcaaattgaaaatgaaagacTTAGAGACTGCCTATGAAAACAAACT
GTTGGAAAAAGGCAACGAATCAACATCAAACCAAAAAGAATACACGTTGA
AACTGACCCAGAAAGACCAGGAAATGATTGCCAAAGAAAATGagtttaaa
ttaaaatttgcTGAAGTGGAAGCGAAACTagccaaaaaagaaaatgtgtt
TAAATTGAAATTGGCTGAAGTGGAGAACGCGAACAAGCTGaaatttgcag
aaattgaagaCAAAGTGAACGAGTTGAATTTGAAACTCATCAAAGAATTG
GAAATCATCCAGAAGAAGCAAGATGAAGCCGCCAACGCAATGCACATTAC
CACGGCTGGGAAGTTGACTTGGGGAGCTGGTAAGTTCTTTGAAAGTAAAC
CAATCGAGCTCAATTTGTTTGCATCGTATCAAGATTGGTATAAAGAAATC
AGTTCGTTGCTACATGGAGAGAAAGAGATTGTTTCGAGTGGTGCGTCGAA
ATATGTGTTCGTGAAAAGAGACTGTGGAGGATGTTTCGAGGATTTACATT
TGTTTGCACACAGAAAGGGACACAAGAGACATAGTAATACTTCTTCTTAT
TTATTATACATTGAAGat Coding sequence (CDS) from alignment at scaffold_222:235943..237260 >TCONS_00052988 ID=TCONS_00052988|Name=TCONS_00052988|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_222:235943..237260 (Clytia hemisphaerica)
atggatTCAATACATGGTGATGATCGGAATTTGGCACACAGTGCTGCTGG
TAGAAATGTCACCAACAAAGTTGACAACAGCACCGTTGAGACAGCGAAAC
TTAAAGAAGACCATGACAAGCAGATTCAAAAATTGACATTTGAAAACAAG
ATCAAGTTTCTCGAATCTGAAAATAACCACCAAATAAAAATCATGCAGCT
TGAAAAGGACAATCAATCGTTAACCCATGAGCTGGAGCTCTTGAAGTTAA
AGACCTCACATGAACAAGAGGCTAAGAAAGTCGTGGTCGATCGTGAAATG
GAGAAAGAAATGCTGAAACAGCAAAATGAAttccaaatcaaaattaatga
aaaagacAAAGAACTAGCtggaaaagacaaaaaaatggcTGGAAAAGACA
AGGCGCTAGCTGGAAAAGACAAGGATATGACTGTCAGGGAAAACGAgttc
aaattgaaaatgaaagacTTAGAGACTGCCTATGAAAACAAACTGTTGGA
AAAAGGCAACGAATCAACATCAAACCAAAAAGAATACACGTTGAAACTGA
CCCAGAAAGACCAGGAAATGATTGCCAAAGAAAATGagtttaaattaaaa
tttgcTGAAGTGGAAGCGAAACTagccaaaaaagaaaatgtgttTAAATT
GAAATTGGCTGAAGTGGAGAACGCGAACAAGCTGaaatttgcagaaattg
aagaCAAAGTGAACGAGTTGAATTTGAAACTCATCAAAGAATTGGAAATC
ATCCAGAAGAAGCAAGATGAAGCCGCCAACGCAATGCACATTACCACGGC
TGGGAAGTTGACTTGGGGAGCTGGTAAGTTCTTTGAAAGTAAACCAATCG
AGCTCAATTTGTTTGCATCGTATCAAGATTGGTATAAAGAAATCAGTTCG
TTGCTACATGGAGAGAAAGAGATTGTTTCGAGTGGTGCGTCGAAATATGT
GTTCGTGAAAAGAGACTGTGGAGGATGTTTCGAGGATTTACATTTGTTTG
CACACAGAAAGGGACACAAGAGACATAGTAATACTTCTTCTTATTTATTA
TACATTGAAGat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052988-exon-scaffold_222-1491911889:235943..237260 | TCONS_00052988-exon-scaffold_222-1491911889:235943..237260 | Clytia hemisphaerica | exon |
| TCONS_00052988-exon-scaffold_222-1510915933:235943..237260 | TCONS_00052988-exon-scaffold_222-1510915933:235943..237260 | Clytia hemisphaerica | exon |
| TCONS_00052988-exon-scaffold_222-1575043694:235943..237260 | TCONS_00052988-exon-scaffold_222-1575043694:235943..237260 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:235943..237260 . |
Blast
The following BLAST results are available for this feature:
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