TCONS_00052991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052991
Unique NameTCONS_00052991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052991 ID=TCONS_00052991|Name=TCONS_00052991|organism=Clytia hemisphaerica|type=transcript|length=905bp
ccggtagaagagaataacatttttaatgactccCAACATGGCTTTCGACA
AGGTAGATCTTGTTTGAGTCAACTCCTTGAACATTATGATACAATTACTA
TCATACCTTGAGAGAGGTATTAATGTCGACACAATCTATTTGGACTTCAG
TAAGGAATTCGACAAAGTTGATCATGCAATTTTGCTACATAAATTGTCTC
AGCTCGGGATCAAAGGAAAGCTATTGCGATGGATTGAATCGTTTTTGAAA
GGCAGAAAACAATCTGTTGTTTTAAATGGCTTCAAATCCGTCAGTGTCCC
TGTCATACCAGGAAAACCTCAAGGAACAGTACTTGGGCCAATTTTGTTTC
TTCTGATGATTTCTGATATTGATGATAATTTATCAGGTATTCAATCCTTG
CAAGCTTTGCTGACGATACTAGAATGCTTAAAGAAATCCAAGGAATAATT
GACACGTTCAAGTTGCAACATGATCTCAACATAGTTTATGATTGGACTGA
GAACAATAACATGAAACTAAATAGTTGTAAATTCGAACATTTAAAATACG
GTAAAGATACTGaatcaaaaagtttatcaaCCTATTTCACTAACAACAAA
ACtgtaattgaaaacaaaaactctGTCAAAGATCTTGGAGTGTGGATGAG
TAGTGACTGCTCATTTACAGATCACATCAATAAAATGATAGCAAAAGCTA
AGGACATTTCTTGTTGAGAACATTCGACAACAGAAGCAGTGATATTATGA
TAACGTTATGGAAATTCTTAGTTTTCCCTCACCTcgactactgttctcag
ctttGGTCACCAAACAGCATCCACCAAATTGAACAGATTGAATCCGTACA
AAAGAActtcttcaataaaatcaaaggccTTAGTGCTTTCGATTATTGGG
AACAa
Run BLAST on NCBI

protein sequence of TCONS_00052991-protein

>TCONS_00052991-protein ID=TCONS_00052991-protein|Name=TCONS_00052991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MIQLLSYLERGINVDTIYLDFSKEFDKVDHAILLHKLSQLGIKGKLLRWI
ESFLKGRKQSVVLNGFKSVSVPVIPGKPQGTVLGPILFLLMISDIDDNLS
GIQSLQALLTILECLKKSKE
Run BLAST on NCBI

transcript from alignment at scaffold_222:284300..285204

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052991 ID=TCONS_00052991|Name=TCONS_00052991|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at scaffold_222:284300..285204 (Clytia hemisphaerica)
tTGTTCCCAATAATCGAAAGCACTAAggcctttgattttattgaagaagT
TCTTTTGTACGGATTCAATCTGTTCAATTTGGTGGATGCTGTTTGGTGAC
CaaagctgagaacagtagtcgAGGTGAGGGAAAACTAAGAATTTCCATAA
CGTTATCATAATATCACTGCTTCTGTTGTCGAATGTTCTCAACAAGAAAT
GTCCTTAGCTTTTGCTATCATTTTATTGATGTGATCTGTAAATGAGCAGT
CACTACTCATCCACACTCCAAGATCTTTGACagagtttttgttttcaatt
acaGTTTTGTTGTTAGTGAAATAGGttgataaactttttgattCAGTATC
TTTACCGTATTTTAAATGTTCGAATTTACAACTATTTAGTTTCATGTTAT
TGTTCTCAGTCCAATCATAAACTATGTTGAGATCATGTTGCAACTTGAAC
GTGTCAATTATTCCTTGGATTTCTTTAAGCATTCTAGTATCGTCAGCAAA
GCTTGCAAGGATTGAATACCTGATAAATTATCATCAATATCAGAAATCAT
CAGAAGAAACAAAATTGGCCCAAGTACTGTTCCTTGAGGTTTTCCTGGTA
TGACAGGGACACTGACGGATTTGAAGCCATTTAAAACAACAGATTGTTTT
CTGCCTTTCAAAAACGATTCAATCCATCGCAATAGCTTTCCTTTGATCCC
GAGCTGAGACAATTTATGTAGCAAAATTGCATGATCAACTTTGTCGAATT
CCTTACTGAAGTCCAAATAGATTGTGTCGACATTAATACCTCTCTCAAGG
TATGATAGTAATTGTATCATAATGTTCAAGGAGTTGACTCAAACAAGATC
TACCTTGTCGAAAGCCATGTTGggagtcattaaaaatgttattctcttct
accgg

Coding sequence (CDS) from alignment at scaffold_222:284300..285204

>TCONS_00052991 ID=TCONS_00052991|Name=TCONS_00052991|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_222:284300..285204 (Clytia hemisphaerica)
TTATTCCTTGGATTTCTTTAAGCATTCTAGTATCGTCAGCAAAGCTTGCA
AGGATTGAATACCTGATAAATTATCATCAATATCAGAAATCATCAGAAGA
AACAAAATTGGCCCAAGTACTGTTCCTTGAGGTTTTCCTGGTATGACAGG
GACACTGACGGATTTGAAGCCATTTAAAACAACAGATTGTTTTCTGCCTT
TCAAAAACGATTCAATCCATCGCAATAGCTTTCCTTTGATCCCGAGCTGA
GACAATTTATGTAGCAAAATTGCATGATCAACTTTGTCGAATTCCTTACT
GAAGTCCAAATAGATTGTGTCGACATTAATACCTCTCTCAAGGTATGATA
GTAATTGTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033464XLOC_033464Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052991-proteinTCONS_00052991-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052991-exon-scaffold_222-1491911889:284300..285204TCONS_00052991-exon-scaffold_222-1491911889:284300..285204Clytia hemisphaericaexon
TCONS_00052991-exon-scaffold_222-1510915933:284300..285204TCONS_00052991-exon-scaffold_222-1510915933:284300..285204Clytia hemisphaericaexon
TCONS_00052991-exon-scaffold_222-1575043694:284300..285204TCONS_00052991-exon-scaffold_222-1575043694:284300..285204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:284300..285204 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27572	1.53331	3.16891	3.61363	4.09475	2.9997	3.24821	3.01806	1.97793	2.90267	1.46022	2.03538	1.7496	2.20432	0.598651	0.659938	0.237179	0.532795	0.565877	1.14548	2.42254	3.138	0.394177	0.7941	1.3359	2.52927	2.48598	1.21842	1.78792	2.0206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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