TCONS_00052994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052994
Unique NameTCONS_00052994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052994 ID=TCONS_00052994|Name=TCONS_00052994|organism=Clytia hemisphaerica|type=transcript|length=499bp
AAAGGTTGGAATCGCTgataaacaaaagattttcttctCTCTGATggcta
agcaaagaaatatagTTTCAACCAGCGATTTGGACCCTCCTATTATTCCC
AACTCTTAAATAAAAAAGGTGTTGAAATTTGAAGAGGGTGGGGTTTCGAC
ATTATAGGCCACAATCACAAATATAACTTGTGTTCGCATTGTCCGACCGA
CTCCTAATTTTCCGACTATTTTGAGTTGGAAAGTTGTAAACTTGTTGGAA
TTTTATCCAATTCCATCCTTCGCTTCACCCACCATCTTTACTTCAATCAc
acatttcattgttttacagaagaattaaatttcaaaacataacCAAGATA
ATATCCGACCCTTTCctataccagtggatacccctaaaacctacaacaaa
aaaaggtaccccctatatcctgatagagaaaacagtaagggctgaaactt
tttctggtgagtctaggctacctatgaatttcttccctggctatggtat
Run BLAST on NCBI

transcript from alignment at scaffold_222:287855..288353

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052994 ID=TCONS_00052994|Name=TCONS_00052994|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at scaffold_222:287855..288353 (Clytia hemisphaerica)
ataccatagccagggaagaaattcataggtagcctagactcaccagaaaa
agtttcagcccttactgttttctctatcaggatatagggggtaccttttt
ttgttgtaggttttaggggtatccactggtatagGAAAGGGTCGGATATT
ATCTTGgttatgttttgaaatttaattcttctgtaaaacaatgaaatgtg
TGATTGAAGTAAAGATGGTGGGTGAAGCGAAGGATGGAATTGGATAAAAT
TCCAACAAGTTTACAACTTTCCAACTCAAAATAGTCGGAAAATTAGGAGT
CGGTCGGACAATGCGAACACAAGTTATATTTGTGATTGTGGCCTATAATG
TCGAAACCCCACCCTCTTCAAATTTCAACACCTTTTTTATTTAAGAGTTG
GGAATAATAGGAGGGTCCAAATCGCTGGTTGAAActatatttctttgctt
agccATCAGAGagaagaaaatcttttgtttatcAGCGATTCCAACCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033467XLOC_033467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052994-exon-scaffold_222-1491911889:287855..288353TCONS_00052994-exon-scaffold_222-1491911889:287855..288353Clytia hemisphaericaexon
TCONS_00052994-exon-scaffold_222-1510915933:287855..288353TCONS_00052994-exon-scaffold_222-1510915933:287855..288353Clytia hemisphaericaexon
TCONS_00052994-exon-scaffold_222-1575043694:287855..288353TCONS_00052994-exon-scaffold_222-1575043694:287855..288353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:287855..288353 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.367011	0.357894	1.66311	0.396358	2.10527	2.33063	2.04469	2.47406	0.515615	2.04312	0.371831	0.407379	0.406964	0.591701	0.277868	0.223646	0.275514	0.470655	0	0.544339	0.47313	0.692328	0.280538	0.765151	2.2359	1.75837	0.671492	0.658651	0.815398	0.646395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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