TCONS_00053007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053007
Unique NameTCONS_00053007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053007 ID=TCONS_00053007|Name=TCONS_00053007|organism=Clytia hemisphaerica|type=transcript|length=163bp
CCTTTTGTAGAGATTTTAGCAACCTTTAAAAACGGACGCATTGTGGATTA
TATGTGCAATTTACTTGATAATGTTTATGtatgttttcaagaaaatgaat
CATGTAAccctatttttgtttttcttgcaTCTTTCAGAATGTGCAATCGT
TACAAGAAATGGT
Run BLAST on NCBI

transcript from alignment at scaffold_223:65336..65645-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053007 ID=TCONS_00053007|Name=TCONS_00053007|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_223:65336..65645- (Clytia hemisphaerica)
CCTTTTGTAGAGATTTTAGCAACCTTTAAAAACGGACGCATTGTGGATTA
TATGTGCAATTTACTTGATAATGTTTATGTATGTTTTCAAGAAAATGAAT
CATGTAACCCTATTTTTGTTTTTCTTGCATCTTTCAGGTAAGTTAATTAT
ACTCGGATTTTGCATCTCCACTTGAAGAAGCCAATTCCACTCCGTCGATG
AAAGTGAAACTCTTAGTTTTTTGTGAACTTGTGATCCCTTATTTACGTTG
AAGATTAAAACCTGCTCTAACCTTTGTCTTTCAGAATGTGCAATCGTTAC
AAGAAATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033478XLOC_033478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053007-exon-scaffold_223-1575043694:65509..65645TCONS_00053007-exon-scaffold_223-1575043694:65509..65645Clytia hemisphaericaexon
TCONS_00053007-exon-scaffold_223-1575043694:65336..65361TCONS_00053007-exon-scaffold_223-1575043694:65336..65361Clytia hemisphaericaexon
TCONS_00053007-exon-scaffold_223-1510915933:65509..65645TCONS_00053007-exon-scaffold_223-1510915933:65509..65645Clytia hemisphaericaexon
TCONS_00053007-exon-scaffold_223-1510915933:65336..65361TCONS_00053007-exon-scaffold_223-1510915933:65336..65361Clytia hemisphaericaexon
TCONS_00053007-exon-scaffold_223-1491911889:65509..65645TCONS_00053007-exon-scaffold_223-1491911889:65509..65645Clytia hemisphaericaexon
TCONS_00053007-exon-scaffold_223-1491911889:65336..65361TCONS_00053007-exon-scaffold_223-1491911889:65336..65361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:65336..65645 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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