TCONS_00053018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053018
Unique NameTCONS_00053018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053018 ID=TCONS_00053018|Name=TCONS_00053018|organism=Clytia hemisphaerica|type=transcript|length=212bp
ttccaaaaatttcacATGCAGCAAAGGAGATGAAATAAGTGGTAGTGTTA
CATTATGTGGTAAACCTCGACCAAATCTTTCTTGGACGATTGGTGATCAA
TCAATAAATGGTACCATCGATTCCACGAAGGCTGATCAACATCAATATAC
ATATTCATTCAAACACAATGTGACGTCAGAGATGTGTGGAAAAAGCGTTT
CTTATCTAGGGA
Run BLAST on NCBI

transcript from alignment at scaffold_223:64422..64633

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053018 ID=TCONS_00053018|Name=TCONS_00053018|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at scaffold_223:64422..64633 (Clytia hemisphaerica)
TCCCTAGATAAGAAACGCTTTTTCCACACATCTCTGACGTCACATTGTGT
TTGAATGAATATGTATATTGATGTTGATCAGCCTTCGTGGAATCGATGGT
ACCATTTATTGATTGATCACCAATCGTCCAAGAAAGATTTGGTCGAGGTT
TACCACATAATGTAACACTACCACTTATTTCATCTCCTTTGCTGCATgtg
aaatttttggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033484XLOC_033484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053018-exon-scaffold_223-1491911889:64422..64633TCONS_00053018-exon-scaffold_223-1491911889:64422..64633Clytia hemisphaericaexon
TCONS_00053018-exon-scaffold_223-1510915933:64422..64633TCONS_00053018-exon-scaffold_223-1510915933:64422..64633Clytia hemisphaericaexon
TCONS_00053018-exon-scaffold_223-1575043694:64422..64633TCONS_00053018-exon-scaffold_223-1575043694:64422..64633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:64422..64633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	16.1816	22.8114	1.59052	1.87455	4.25051	3.32162	11.004	12.2412	14.3846	11.4464	6.6812	6.53547	19.0514	21.8879	5.40848	5.93565	1.60346	2.91555	19.5192	8.51149	0	2.04649	11.8071	5.45276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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