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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053053 ID=TCONS_00053053|Name=TCONS_00053053|organism=Clytia hemisphaerica|type=transcript|length=421bp
GTTTACCGGAGAAAATATTCTATGGTTGTTACTATTTATTGTGGATTTGC
AAATAATTGGTATCCTTGGGATCGACGAGTTTATTGATGTTGAATATAGA
TCAGGTGAAGTTGATAAATTTAAAATACACGGCTCGTCATTTGAAGAGTC
AGTttgcaaaacaaaatttaacgcTAGGTTAGAACGTAAATGGTCAGACG
GTGTAGAATGTATGTGTGCCGCGGGTGAAACATTTATCGCTTTGAATGGA
GAAGTTCCTAAATGTCAAGTTGAAGATATCAACAATAGAATTTTCGattG
TTCTTGCAGTGGGCAATGCTCTCAAATTTTAAAGCAATATCGGAGCAGTG
ACAGAGTCATTGGGAAGATTTATTTGGGCGACTTGGACTGCTTGAATCAA
TATCAGTCAGGAAAGGAGGGC Run BLAST on NCBI protein sequence of TCONS_00053053-protein >TCONS_00053053-protein ID=TCONS_00053053-protein|Name=TCONS_00053053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
FTGENILWLLLFIVDLQIIGILGIDEFIDVEYRSGEVDKFKIHGSSFEES
VCKTKFNARLERKWSDGVECMCAAGETFIALNGEVPKCQVEDINNRIFDC
SCSGQCSQILKQYRSSDRVIGKIYLGDLDCLNQYQSGKEG Run BLAST on NCBI transcript from alignment at scaffold_225:170058..171646+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053053 ID=TCONS_00053053|Name=TCONS_00053053|organism=Clytia hemisphaerica|type=transcript|length=1589bp|location=Sequence derived from alignment at scaffold_225:170058..171646+ (Clytia hemisphaerica)
GTTTACCGGAGAAAATATTCTATGGTTGTTACTATTTATTGTGGATTTGC
AAATAATTGGTATCCTTGGGATCGACGAGTTTATTGATGTTGAATATAGA
TCAGGTGAAGTTGATAAATTTAAAATACACGGCTCGTCATTTGAAGAGTC
AGTttgcaaaacaaaatttaacgcTAGGTTAGAACGTAAATGGTCAGACG
GTGTAGAATGTATGTGTGCCGCGGGTGAAACATTTATCGCTTTGAATGGA
GAAGTTCCTAAATGTCAAGTTGAAGATATCAACAATAGAATTTTCGGTAG
GTATATTTCATCAGTATCGCTTTAACAGtaacaagaagccggagcggcgt
gaaggtccagctgacgtggcaataacccaatgtcgttcgtaccgggttcg
TTAAGTGAAGCAAAAAgatttccttcccatcctccactctgagcttctat
tttttgacactttctttgtacTGCTacgttttgaaagtttttgatgcatt
tcccgaaatttcgaaacttatGCCGCTGATGGGATCcgaacccactatat
acaaagcacctatgaTTAGAACGTCAGCGCCTGAACCACTCGGTcatcga
gtcacaactgcattaaggagttcaaagttgtttataaacatggtatttac
tccaaactctacccgggggctaaaaccctaaccaggggttaactcccatc
cccaaccctagccttaaccctacctgaccctacctgaaataaccctttaa
tctaaccgggaaatttgactctactaccaattcaatccaaaacataggtc
aaacatcgcgcgggtaggcggggcaaaaattctagatcggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNaattctagatcggcggttggtttag
cctggacttgttaatttattgcacgcacaggccccgacaaagacaaaatc
ttttcgatcagttgctttttaaaggtccattcggctgcgcgctggaccaa
ttaATGTATTTTAAATTAATGAAATTATAACAAGAGCCACAATATGAGGA
TAATTATTTCTCGTGCAACTACAAAAAAAGAGGTTTGGGgacacaagaag
tttttttgcgttggtgcaatgctacatgctccatcccaccaacacaagaa
aaaacgcgcgtgtctcatggtttctttttttgtttcttgagacaaaaagt
gagggaaatacccaaaagacacgctgattttgtcccagggacaaaagtga
aacttcacttttattggtagaaagaaaaatgggctggagacacgagaaag
cgctTCAGGCTGGTTGGATGGAGCATCTTGCATTGCACTAATGCAAAATA
AACTTCTCGTGCCCCAAGCCTTAAGAAATACTCATCATATATtccaaata
actttttttattagattGTTCTTGCAGTGGGCAATGCTCTCAAATTTTAA
AGCAATATCGGAGCAGTGACAGAGTCATTGGGAAGATTTATTTGGGCGAC
TTGGACTGCTTGAATCAATATCAGTCAGGAAAGGAGGGC Coding sequence (CDS) from alignment at scaffold_225:170058..171646+ >TCONS_00053053 ID=TCONS_00053053|Name=TCONS_00053053|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_225:170058..171646+ (Clytia hemisphaerica)
TTTACCGGAGAAAATATTCTATGGTTGTTACTATTTATTGTGGATTTGCA
AATAATTGGTATCCTTGGGATCGACGAGTTTATTGATGTTGAATATAGAT
CAGGTGAAGTTGATAAATTTAAAATACACGGCTCGTCATTTGAAGAGTCA
GTttgcaaaacaaaatttaacgcTAGGTTAGAACGTAAATGGTCAGACGG
TGTAGAATGTATGTGTGCCGCGGGTGAAACATTTATCGCTTTGAATGGAG
AAGTTCCTAAATGTCAAGTTGAAGATATCAACAATAGAATTTTCGattGT
TCTTGCAGTGGGCAATGCTCTCAAATTTTAAAGCAATATCGGAGCAGTGA
CAGAGTCATTGGGAAGATTTATTTGGGCGACTTGGACTGCTTGAATCAAT
ATCAGTCAGGAAAGGAGGGCTTTACCGGAGAAAATATTCTATGGTTGTTA
CTATTTATTGTGGATTTGCAAATAATTGGTATCCTTGGGATCGACGAGTT
TATTGATGTTGAATATAGATCAGGTGAAGTTGATAAATTTAAAATACACG
GCTCGTCATTTGAAGAGTCAGTttgcaaaacaaaatttaacgcTAGGTTA
GAACGTAAATGGTCAGACGGTGTAGAATGTATGTGTGCCGCGGGTGAAAC
ATTTATCGCTTTGAATGGAGAAGTTCCTAAATGTCAAGTTGAAGATATCA
ACAATAGAATTTTCGattGTTCTTGCAGTGGGCAATGCTCTCAAATTTTA
AAGCAATATCGGAGCAGTGACAGAGTCATTGGGAAGATTTATTTGGGCGA
CTTGGACTGCTTGAATCAATATCAGTCAGGAAAGGAGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053053-exon-scaffold_225-1491911889:170058..170353 | TCONS_00053053-exon-scaffold_225-1491911889:170058..170353 | Clytia hemisphaerica | exon |
| TCONS_00053053-exon-scaffold_225-1510915933:170058..170353 | TCONS_00053053-exon-scaffold_225-1510915933:170058..170353 | Clytia hemisphaerica | exon |
| TCONS_00053053-exon-scaffold_225-1575043694:170058..170353 | TCONS_00053053-exon-scaffold_225-1575043694:170058..170353 | Clytia hemisphaerica | exon |
| TCONS_00053053-exon-scaffold_225-1491911889:171522..171646 | TCONS_00053053-exon-scaffold_225-1491911889:171522..171646 | Clytia hemisphaerica | exon |
| TCONS_00053053-exon-scaffold_225-1510915933:171522..171646 | TCONS_00053053-exon-scaffold_225-1510915933:171522..171646 | Clytia hemisphaerica | exon |
| TCONS_00053053-exon-scaffold_225-1575043694:171522..171646 | TCONS_00053053-exon-scaffold_225-1575043694:171522..171646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:170058..171646 + |
Blast
The following BLAST results are available for this feature:
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