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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053055 ID=TCONS_00053055|Name=TCONS_00053055|organism=Clytia hemisphaerica|type=transcript|length=2029bp
ACCGATGATGACGACGCGTTCTATCAGCGGTAGCGATACAACGACACAAG
ACTCTTCAACAACGACGATTTTTATCGGCAGTTTGGTCGGCGTTCTTGTG
CTTCTCATAATCGTCATTGTTTTGGTGATTGTTTGTTGTATCAAGAAAAG
GAGAGGCgaagtaaacaaaaacaaagcacCAATCCAATTTCACGCTGATA
ATCCTGCATTCAAAGCATCCGCACCAAGTCAACAACAACACAGTAATGGT
GAATATCTATACCCAGAATTTGGACCTGCATCAAATGTCCATCAGAACCA
ACAATCTAGAACTACTGGATATGAGTTTGATCCTGAAGATGAAGGAAACT
CACAGTATCAGCCATACCTCAAACCAGACACCCTAGTATACGAACCCATA
CCTTACAATGATTGACTCTGGACAATTATTTCCCAATGGCGTTTTATATT
ATAATTTATGATACATAATTTTGCAAGTATAATCATCAGCACAGATTTTA
TAAAgcacgaagggctagatatcgtgcttttgctgaaaagtgtgccgatg
tTTTTATAACTTTGGAAAAAGGAAATCTAGgtaatcctacctaagtcacg
tgacattacaatagaatttccgaAAACCATAGCAGCAATactttttgcga
tattcactttttttacttcgaagagcttaaagcactccatctagccaTTC
GgcctttataaatctatgatcaTCAGCCTTTTTCGGAGAATTCATGCATC
TGTTACATGCTTTTTTCTACCGTGAGCACCAGTTTAGCTTTCTTTACAAT
TCAACCTATCGCGACGGACTATGAAAATTTTGTATGGCGTCATGAACATA
ATGGCGTTTATTTCAATAACATTATTATTCAAAGAATTGTAGATAGGAAG
AAACTTCAGTATTTCTACcaaaagttctttttcaaactcTTAACTTGTGT
AATATTTTTCAGACAGGTAACTATTTTTCATAACCCCCAAATATGGtcat
tttgagagatttttgagattttagaaaTGCTATATCTTTCATTCAACTTC
TCAAGATATAAAAAACACCTGGATTTTCGGATAGGTATAAGGTATAGAAA
ACTTTCTATACCCGACCTTCATAATTTCAATATGTAAGGTAATACAGAGA
CATCTATGCAATCTTTGGCAGATTTTGGATGGGACACATAGTTTCCTCAC
CCTCTTTCTGGGGGGGAGGGGGTTCGTTTGCAGATTTGACGTTCTAGTAG
GTAGATAACGTATTTGCTTTTACAGTTGACATTGTGGAATATCTTGAACT
AGCGTTTTGTTTGTTGTGATACGACGTGGAGGTTGTTGTTAATTGACGAC
AGCAAAGGTTTCGGGAAATTGTGAGTTTAACTTGTACTTCTATACCTTAT
GGAATTTAGACAGAGTCGAAGCACGAGGCAAGGATAGACACAGAAGGTTT
GATATTTTGGCAGGTAATAATATTGGCTAACTCTaaaagttttggggaaa
atttgtcccTTACAAGATGTATATATATACAACCTAAAAACTCTACGAGT
CGCCCACAGCCTTTGATGATGTAGGGTGGGAGGGTGGTTATAAAATTTTC
ACTGCTTAGTTCACTGAAGCTTTATCTCGAAAGGTCTAACGAAGCCGTCT
TGGTCGAGATGGGCCTCTCGGGTATTTTACCGAACGTAAGTATATACCGC
CACGGGCGTGATAGAATAAAGTTAAACCACGATTTAAAGCTATACGTTAA
ATCCACATTTAACTTGTACTTCTATACCTTATGGAATTTAGACAGAGTCG
AAGCACGAGGCAAGGATAGACACAGAAGGTTTGATATTTTGGCAGGTAAT
AATATTGGCTAACTCTaaaagttttggggaaaatttgtcccAACCGAAAG
GTGCCCCCAAAACAACAATAACGAAGCATAGGTGAGGCCGGCTGCAGGCA
TCAAACTAAATATACAATAAGTAACCTATaattatcaaaatcaaatcaaa
ttgtctACAAAATAGCCTAGAAGACTCAG Run BLAST on NCBI protein sequence of TCONS_00053055-protein >TCONS_00053055-protein ID=TCONS_00053055-protein|Name=TCONS_00053055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
PMMTTRSISGSDTTTQDSSTTTIFIGSLVGVLVLLIIVIVLVIVCCIKKR
RGEVNKNKAPIQFHADNPAFKASAPSQQQHSNGEYLYPEFGPASNVHQNQ
QSRTTGYEFDPEDEGNSQYQPYLKPDTLVYEPIPYND Run BLAST on NCBI transcript from alignment at scaffold_225:185710..188508+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053055 ID=TCONS_00053055|Name=TCONS_00053055|organism=Clytia hemisphaerica|type=transcript|length=2799bp|location=Sequence derived from alignment at scaffold_225:185710..188508+ (Clytia hemisphaerica)
ACCGATGATGACGACGCGTTCTATCAGCGGTAGCGATACAACGACACAAG
ACTCTTCAACAACGACGATTTTTATCGGCAGTTTGGTCGGCGTTCTTGTG
CTTCTCATAATCGTCATTGTTTTGGTGATTGTTTGTTGTATCAAGAAAAG
GTATGACTAAAAAGACACGATACACGTTCTTAATAAGAATattcaaacat
ttttgaagccttcggatgctctttttttagttttaagcctgaaaatgttt
tttaacatgttcttattttaccatttgtgagtatttttgtgcaatttcct
aagaaatttgtgTCAAGAAAGccgtaaaatgttcttaatttgttcttaat
attttggccttatgtccctatatagtttgttcttatataaaatgtGAAGG
GTTTTGCGCGTCAAAGCTTCTCATTTTTTCcccaaataaaattttgaaat
gtaaatTTCCAAGCCAAGGTATGTATATAATAGAGGCTATGTGCTGTTTT
TGTAGAAGTaatgaaaagtattttttttttctattaaacATGTAGAGATC
GTTCGTTCCTATTCTTATTTTACACATGTCAACGGATACTAAATTAGTAA
TGGTTTGTGTCATACACAACCGGATTTTTTCAACCAGTGGGGTTAAAAAT
AACGGGCTGAAGACTTGATGGGAATTGATATTTCCatagtttttatggct
ggggatttcaattcttttgttttcaagacataaaattcagtgaggatggg
acaaatagcataaaattttgcagtgaagattggtttatttgattattctc
AGTGAGAACACAAATTGgaagataattttccaccgggataATATTGTGAC
cactttttccagtgggaagggttcctaGTGGGTGAGAAGGGGGTGCTGTT
ATGCCTTCGTTTTCTTTTAGGAGAGGCgaagtaaacaaaaacaaagcacC
AATCCAATTTCACGCTGATAATCCTGCATTCAAAGCATCCGCACCAAGTC
AACAACAACACAGTAATGGTGAATATCTATACCCAGAATTTGGACCTGCA
TCAAATGTCCATCAGAACCAACAATCTAGAACTACTGGATATGAGTTTGA
TCCTGAAGATGAAGGAAACTCACAGTATCAGCCATACCTCAAACCAGACA
CCCTAGTATACGAACCCATACCTTACAATGATTGACTCTGGACAATTATT
TCCCAATGGCGTTTTATATTATAATTTATGATACATAATTTTGCAAGTAT
AATCATCAGCACAGATTTTATAAAgcacgaagggctagatatcgtgcttt
tgctgaaaagtgtgccgatgtTTTTATAACTTTGGAAAAAGGAAATCTAG
gtaatcctacctaagtcacgtgacattacaatagaatttccgaAAACCAT
AGCAGCAATactttttgcgatattcactttttttacttcgaagagcttaa
agcactccatctagccaTTCGgcctttataaatctatgatcaTCAGCCTT
TTTCGGAGAATTCATGCATCTGTTACATGCTTTTTTCTACCGTGAGCACC
AGTTTAGCTTTCTTTACAATTCAACCTATCGCGACGGACTATGAAAATTT
TGTATGGCGTCATGAACATAATGGCGTTTATTTCAATAACATTATTATTC
AAAGAATTGTAGATAGGAAGAAACTTCAGTATTTCTACcaaaagttcttt
ttcaaactcTTAACTTGTGTAATATTTTTCAGACAGGTAACTATTTTTCA
TAACCCCCAAATATGGtcattttgagagatttttgagattttagaaaTGC
TATATCTTTCATTCAACTTCTCAAGATATAAAAAACACCTGGATTTTCGG
ATAGGTATAAGGTATAGAAAACTTTCTATACCCGACCTTCATAATTTCAA
TATGTAAGGTAATACAGAGACATCTATGCAATCTTTGGCAGATTTTGGAT
GGGACACATAGTTTCCTCACCCTCTTTCTGGGGGGGAGGGGGTTCGTTTG
CAGATTTGACGTTCTAGTAGGTAGATAACGTATTTGCTTTTACAGTTGAC
ATTGTGGAATATCTTGAACTAGCGTTTTGTTTGTTGTGATACGACGTGGA
GGTTGTTGTTAATTGACGACAGCAAAGGTTTCGGGAAATTGTGAGTTTAA
CTTGTACTTCTATACCTTATGGAATTTAGACAGAGTCGAAGCACGAGGCA
AGGATAGACACAGAAGGTTTGATATTTTGGCAGGTAATAATATTGGCTAA
CTCTaaaagttttggggaaaatttgtcccTTACAAGATGTATATATATAC
AACCTAAAAACTCTACGAGTCGCCCACAGCCTTTGATGATGTAGGGTGGG
AGGGTGGTTATAAAATTTTCACTGCTTAGTTCACTGAAGCTTTATCTCGA
AAGGTCTAACGAAGCCGTCTTGGTCGAGATGGGCCTCTCGGGTATTTTAC
CGAACGTAAGTATATACCGCCACGGGCGTGATAGAATAAAGTTAAACCAC
GATTTAAAGCTATACGTTAAATCCACATTTAACTTGTACTTCTATACCTT
ATGGAATTTAGACAGAGTCGAAGCACGAGGCAAGGATAGACACAGAAGGT
TTGATATTTTGGCAGGTAATAATATTGGCTAACTCTaaaagttttgggga
aaatttgtcccAACCGAAAGGTGCCCCCAAAACAACAATAACGAAGCATA
GGTGAGGCCGGCTGCAGGCATCAAACTAAATATACAATAAGTAACCTATa
attatcaaaatcaaatcaaattgtctACAAAATAGCCTAGAAGACTCAG Coding sequence (CDS) from alignment at scaffold_225:185710..188508+ >TCONS_00053055 ID=TCONS_00053055|Name=TCONS_00053055|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_225:185710..188508+ (Clytia hemisphaerica)
CCGATGATGACGACGCGTTCTATCAGCGGTAGCGATACAACGACACAAGA
CTCTTCAACAACGACGATTTTTATCGGCAGTTTGGTCGGCGTTCTTGTGC
TTCTCATAATCGTCATTGTTTTGGTGATTGTTTGTTGTATCAAGAAAAGG
AGAGGCgaagtaaacaaaaacaaagcacCAATCCAATTTCACGCTGATAA
TCCTGCATTCAAAGCATCCGCACCAAGTCAACAACAACACAGTAATGGTG
AATATCTATACCCAGAATTTGGACCTGCATCAAATGTCCATCAGAACCAA
CAATCTAGAACTACTGGATATGAGTTTGATCCTGAAGATGAAGGAAACTC
ACAGTATCAGCCATACCTCAAACCAGACACCCTAGTATACGAACCCATAC
CTTACAATGATTGACCGATGATGACGACGCGTTCTATCAGCGGTAGCGAT
ACAACGACACAAGACTCTTCAACAACGACGATTTTTATCGGCAGTTTGGT
CGGCGTTCTTGTGCTTCTCATAATCGTCATTGTTTTGGTGATTGTTTGTT
GTATCAAGAAAAGGAGAGGCgaagtaaacaaaaacaaagcacCAATCCAA
TTTCACGCTGATAATCCTGCATTCAAAGCATCCGCACCAAGTCAACAACA
ACACAGTAATGGTGAATATCTATACCCAGAATTTGGACCTGCATCAAATG
TCCATCAGAACCAACAATCTAGAACTACTGGATATGAGTTTGATCCTGAA
GATGAAGGAAACTCACAGTATCAGCCATACCTCAAACCAGACACCCTAGT
ATACGAACCCATACCTTACAATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053055-exon-scaffold_225-1491911889:185710..185859 | TCONS_00053055-exon-scaffold_225-1491911889:185710..185859 | Clytia hemisphaerica | exon |
| TCONS_00053055-exon-scaffold_225-1510915933:185710..185859 | TCONS_00053055-exon-scaffold_225-1510915933:185710..185859 | Clytia hemisphaerica | exon |
| TCONS_00053055-exon-scaffold_225-1575043694:185710..185859 | TCONS_00053055-exon-scaffold_225-1575043694:185710..185859 | Clytia hemisphaerica | exon |
| TCONS_00053055-exon-scaffold_225-1491911889:186630..188508 | TCONS_00053055-exon-scaffold_225-1491911889:186630..188508 | Clytia hemisphaerica | exon |
| TCONS_00053055-exon-scaffold_225-1510915933:186630..188508 | TCONS_00053055-exon-scaffold_225-1510915933:186630..188508 | Clytia hemisphaerica | exon |
| TCONS_00053055-exon-scaffold_225-1575043694:186630..188508 | TCONS_00053055-exon-scaffold_225-1575043694:186630..188508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_225 | supercontig | scaffold_225:185710..188508 + |
Blast
The following BLAST results are available for this feature:
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