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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053063 ID=TCONS_00053063|Name=TCONS_00053063|organism=Clytia hemisphaerica|type=transcript|length=851bp CAAAAATATGGCACAAAATGAAACAGTAACACTAGAATGCATCAGAAAAG AAATCGGAGATGAGAATTTACCAGTAAAAGGTGTTATGTTTGGTGGTGAT GGAGCTGTCGGTAAAACCTCCATGTACCTTTATTATTTCCTTGAGAAAAA GGAGCCTAAATACATACCTGTTAAAGTTGAAACTGACTATGgaccaaaaa tatacaaatataaaaaaactggAGAAAAAGTAGGGATTTATTATGATGAT CATGAAGGAGGCGGCGAGGACTGGGATCGGCTACGTCATCTTGGTTATGA AAGAGCTGACGTTGTAGTTCTTTGTTTTTCTATTGGGTCTAGAAAGAGTT TTGATAACATTGAAGAATATTGGTACCCTTTTGTACAAAAACATGCATCA AAAGCACCCATTGTGTTGTGTGGTACACAAACAGATATGAGAACTGACCA GTTCTATCTTGATAGGTTAGCAGAGCATAATCAAAAACCAATAACTAATG TTGAAGGTAAAAAGCTGGCTCAAAAAATTAAAGCTGTAGGTTATTTTGAA TGCTCAAGTGTTGAAGGAAGAGGAGTAAAAGAACTTTTTGATGCAGCAGC AGAGGCTACTCATCCTGATATTACCAAAACCAAATCAGAAGAATGCTCAG TTATGTAAATTGCACACTCGATCGGGCTTCTGATTAAGgatattaaaaca aaagaatcactCGTGCtaaattattctcgaattgcactcgttatcatgtg atcaCATATGCAGAGCTTTTTTTACTGAAATAATcttattattgttgttg ttaATTATTGTTAGTGCAGTCAAATCTCTATAACTCCAACCTGCatggaa a Run BLAST on NCBI protein sequence of TCONS_00053063-protein >TCONS_00053063-protein ID=TCONS_00053063-protein|Name=TCONS_00053063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
KNMAQNETVTLECIRKEIGDENLPVKGVMFGGDGAVGKTSMYLYYFLEKK EPKYIPVKVETDYGPKIYKYKKTGEKVGIYYDDHEGGGEDWDRLRHLGYE RADVVVLCFSIGSRKSFDNIEEYWYPFVQKHASKAPIVLCGTQTDMRTDQ FYLDRLAEHNQKPITNVEGKKLAQKIKAVGYFECSSVEGRGVKELFDAAA EATHPDITKTKSEECSVM Run BLAST on NCBI transcript from alignment at scaffold_225:98994..105800- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053063 ID=TCONS_00053063|Name=TCONS_00053063|organism=Clytia hemisphaerica|type=transcript|length=6807bp|location=Sequence derived from alignment at scaffold_225:98994..105800- (Clytia hemisphaerica) CAAAAATATGGCACAAAATGAAACAGTAACACTAGAATGCATCAGAAAAG
AAATCGGAGATGAGAATTTACCAGTAAAAGGTGTTATGTTTGGTGGTGAT
GGAGCTGTCGGTAAAACCTCCATGTACCTTTATTATTTCCTTGAGAAAAA
GGAGCCTAAATACATACCTGTTAAAGTTGAAACTGACTATGGACCAAAAA
TATACAAATATAAAAAAACTGGAGAAAAAGTAGGGATTTATTATGATGAT
CATGAAGGAGGCGGCGAGGACTGGGATCGGCTACGTCATCTTGGTTATGA
AAGAGCTGACGTTGTAGTTCTTTGTTTTTCTATTGGGTCTAGAAAGAGTT
TTGATAACATTGAAGAATATTGGTACCCTTTTGTACAAAAACATGCATCA
AAAGCACCCATTGTGTTGTGTGGTACACAAACAGATATGAGAACTGACCA
GTTCTATCTTGATAGGTTAGCAGAGCATAATCAAAAACCAATAACTAATG
TTGAAGGTAAAAAGCTGGCTCAAAAAATTAAAGCTGTAGGTTATTTTGAA
TGCTCGAGTGTTGAAGGAAGAGGAGTGAAAGAACTTTTTGATGCAGCTGC
CGAAGCGACGAACCCAAATGTTACAACTAATTCTAAGCCAGGAAAATGCT
TTTTAATGTAGACTAACCAAACTCGCACTATGCATCAATTTTGACGGTTA
TTAAATCGATTTGCAACATCCTATATAGAAAAGCAAATCGTCACGAGGAC
GAAATTACGAAATTGACTTCATTTCCCTTTGAAAGTACAAAGAGCACTTA
AAAATTGTCATTTAAAGTAAGGTGGATAGAGATTTCTTTTTACATTGGAC
AGGATAAAGACGAATGAAGTTTATTTCTCCTTTATTTCCCTTTAAGAAAT
TTAAGGTTTAAACCTCTTTTTCCTTTAGAAGTACAAAGATTATAACTTAT
TCTCTTTTGAAACTCTTCATTTATTTTGAAATACAAAGAATATAGTTTGC
TCTCCTTGGAATATACAAAGGTTAGACTTAATTTTCCTTTAAAAGTTTAA
AAGTTAAAAAAAATAAACTTCCAATGATTTTCCTTACATTTATCTTCCTT
TGAAAATACACAAAATTTTCTTTCAAGAAATGAAATTCGCTTAGATTTTA
CTTTACCTTAAATCGTTGAATAATTCTATGATTAACGTATACGATGTTGT
GTTTCCATATGACCCTTTGACGACAACATCATNATCTAGAAAGAGTTTTG
ATAACATTGAAGAATATTGGTACCCTTTTGTACAAAAACATGCATCAAAA
GCACCCATTGTGTTGTGTGGTACACAAACAGATATGAGAACTGACCAGTT
CTATCTTGATAGGTTAGCAGAGCATAATCAAAAACCAATAACTAATGTTG
AAGGTAAAAAGCTGGCTCAAAAAATTAAAGCTGTAGGTTATTTTGAATGC
TCGAGTGTTGAAGGAAGAGGAGTGAAAGAACTTTTTGATGCAGCTGCCGA
AGCGACGAACCCAAATGTTACAACTAATTCTAAGCCAGGAAAATGCTTTT
TAATGTAGACTAACCAAACTCGCACTATGCATCAATTTTGACGGTTATTA
AATCGATTTGCAACATCCTATATAGAAAAGCAAATCGTCACGAGGACGAA
ATTACGAAATTGACTTCATTTCCCTTTGAAAGTACAAAGAGCACTTAAAA
ATTGTCATTTAAAGTAAGGTGGATAGAGATTTCTTTTTACATTGGACAGG
ATAAAGACGAATGAAGTTTATTTCTCCTTTATTTCCCTTTAAGAAATTTA
AGGTTTAAACCTCTTTTTCCTTTAGAAGTACAAAGATTATAACTTATTCT
CTTTTGAAACTCTTCATTTATTTTGAAATACAAAGAATATAGTTTGCTCT
CCTTGGAATATACAAAGGTTAGACTTAATTTTCCTTTAAAAGTTTAAAAG
TTAAAAAAAATAAACTTCCAATGATTTTCCTTACATTTATCTTCCTTTGA
AAATACACAAAATTTTCTTTCAAGAAATGAAATTCGCTTAGATTTTACTT
TACCTTAAATCGTTGAATAATTCTATGATTAACGTATACGATGTTGTGTT
TCCATATGACCCTTTGACGACAACATCATAAAATGCATAAAACGTTACTA
TCATAATTCAATCATATCAAACACGTTTCATATTTCTCATTTAAAGTTAA
GCAGTCCATCTTAACTTTATATAAACCACAAGCTGAAAAACACAAAAATG
CTTTACTCTACACATTATAAAACATCATTAGAGAAATGTGTGGTCCGTTG
AGGGTTGGTTATTAGGAATTTCTCTCGTAGAACGCGCACGGCCTTTGGTT
AGTCGTACAGGGTTCGGTGTGACCCAAATACACTGCCCGACTCTAAGCCT
TCATAGGATTGACCATACATCTCTCTTTTCCATCATTTTTTAAGAATAGC
CTTTGAGTTCCTAAGATATGCTTCTTTCTGAAAGACTTACCTTTCCTTCT
TAATTTTGTGTTTCTGTTTCAAGTTACAAGTCACTTTAAAATCATCTAAA
TCAAAGCATATGCAGGAATCAGAGCTTCCGTGGCGCAATTGGTTAGCGCG
TTCGGCTGTTAACCGAAAGGTTGGTGGTTCAAGCCCACCCGGGAGCGATG
ATTTTTCTTAGTTAAATGATCAGTATGTAGTAAGTAAAATCAGCTTGGTC
GCTCCGGAGTTTTAACAGGGCCTTCGCGACCTGATTGTTAATGGCTTTCT
AGCCATTACATTAGAAATGATAATATTAAATGTTGAAAGTGATGTCCATT
GTCTGACTAAGAAATTTCGAAATTTTCGTTATAGAATCAGTTAACATGGC
TGGATTAATGAGATGCATGTACATCATTTTGTATATGTGTATAATGTTCA
TTTATAAAAAAGGTTCGTTATGTTTTTCACTACACGCTTTTTATTGTAAG
AATATTCATGATGAAATTGGCCAAAAATGTTAAGAATACGCCTTTAAATC
TCGGAGTTTTTTTCCCGAAATATTTAGTGATATTTTATCTTATAAGAAAT
CTTATAAGAAATGTTTGTATTGTTTAAAAGTACTTTGTACGTATTAACTT
ATTTTGTTAAATTATTATTATCGTTACGTACATTGTTAAAAAAATATTCG
CGCGGCATATTCTATGAAATACTGCTATAATTACCGTATCACTTTGAATA
AACGCCCACTACTTTTAAATAACCCTCCCCTTTTAATAAACATCCCTCCT
AATAGGAAAATTATCTAATAAAGATCCCCTCAAATAAACGTCCCTCCTAA
AATCGAAAAAATGAAATAAACGCCCCTGGCGTTTATTCGAAGTAATACGG
TATTACATTTGAGTCTTTTCCGAGACTAGTTCCGTTTTTTGTAATATTAG
GAAAATCAGAAAGAATATGTTCCCATTATACATGCAATAACTGTTACTCG
TTACATTAATTTTTAGAAATAATTATATCTAAAAATATTGGACGATGAAA
GTAACCGAGGATATGAAATGGCACCTCATTGGATATTGACTTTTGGAAGG
AATTGATAATGCATTGAGACCAGAGAAAGTTATGAACCAATGAACGACAA
ATGAAAACGTAAGCAAAACTTCTTTATCCTACATTATTGTTCTGGTGCTG
TGTGTCTATTTGAACGTCTGTGTTTCAGTCAATACACTATAAAGTCCGAA
AGAGTCTTATAATGCTGCCTTAAGGGCTCTGACCATAGTGAATTTTTCAT
AATTGCCGTGCTTAAAATGTGTTTCCTGACTGATATAACCAACAAAACTA
TGGCATGTTATACATTTTCTGTTAGAAAAACTATTCCTGAATCTGAAAAT
TCAAAAATTGCATTGAAAAAATTTGATGAAGAAGAAAATGAAGTCTTTTG
CGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAA
CATTTTGAAAAATTTTTCGCATTACCTGGTGTATCTTTTACCGAACAATA
AAAATTTTTGCGGAAAATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTC
AAAATAGTGGTTTTTCATCAATTTTTCATCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCAATTCTTTGCGGACAGTGTAAAGAAATTTTGA
AACAAAAAAGTTAATTACCCATTAAAACTAAGCACTTTTTGTAAAAGAGG
GTGATGCAACATATTATTAACATCGTTTTAAAGTTCATAACGTCATTTTT
GCAATTAAATTCTTAATTACTCCCTTAATTCGATTAAAAAGCAATTTATA
AAGGCAATTCTTTGTTAAAAGTGTTAAGGAACCTGAAATATAACTTTTAT
GTTCAAATACCAAAATCAACTTTTGGACTATGGTCAGAGCCCTTAATGGG
GAGCTTATCTGACGTACGTATTCAGAGAAATGCAGTCGAAAAGTTTTGTT
AGTCTACGAGGCATCAGTTTTCACTCGACAAGACCAGCAACGAGGGTTTT
TTACAGAATATCTTAAAATAACTCGTGAAAATCTATTTCGAATCTATTTT
CTTGAAAATTATCACATCCATTTTCCTATAAGAGCAAATGAATCTTTCCA
GGAGTAAAAAATGCAACTCAGAACAGTTTTTAATTTTCAGGAAAGCTAAT
TTTATCAAAAAATAGATGCCTTTATCCAGGTGCCGGCTGAAAAAAAAACG
GATACGATTTTCCACGGGAAATTAAACCTTTCAGAACATAATTGGTAAAA
ATTTAAAAAATGTTTTTAATTAAATTTATTTATAGCGTTCGAACATTTTT
ATCTTCATTCAGCTTCTTTCCAACTATCTATCAGGTAGGTCTATTCAGCA
TTTTGCTTGTTAGTTTTGCCATGATTTAATTAAGTTTCTTGAATTGAATT
TGAGGCGTAGTAGTGTAGTGGTTATAAACCTTGATTCCTATCTGAGTGGT
CAGGGTTCGATTCTTACTCGGTGCTTTGATTCGCTCGGGTCGACCCATGC
CTTGTGAGGGGAAATGGGTGCCGTCACTCTGATAAAGGAGTATGGGGAGT
ATCATATGTTCGACACCTGCGAAGATATATGTCCTCCCGTGTAGTTCGAG
TATTATCGTCTACACTAATAACTCTGTCTTGTCGCGAGCGCAGGGTTAGC
AGTGTCTACTAAGCGTAGTAATTTCCCTATTCTAGGGTAGGTATCTATCC
AGGGATAGAGCCCATTCTGGATGATTTTGAGGGTTCATTTCTCCTCTTTC
TTGACTTTTTTCATCGTTTATTCATTTCATTTATATTCATTCATTTCATT
TCATTTATTTATTTCATTCGTTTATTCATTCATTCATTCATTGGCCCAGC
GCGCAGCGGTATGGGCCTTTAAAACGCAACTGGTCGAAAAGATTTGACTT
TGTCGGGGCCTATGCGCGCGATTATCAATTGACGCATCGAGGCTATGGAA
TTATCTGGCTTTCTATTGTGAGCATGCGTAAGAAAAACACATATAATAAT
TAATACCTCCAACTTATCTGGTCAAATCTTTTTTTCTCTCAAAATATTAA
AGTAATTAAATTTTTTTTACTCGCGCAACTTGAGTAAATAAATCAAAAAA
TTTACTCCTGTAAATTTGTACAGCGACTCTTTAACGAAAAAATATGTTGA
CACTGCCAATACTGCTGGGCCTTTACGCCGCTTAGGCTTTCTTGTTCCTT
TTGATTTCATTTCTATTTCATTCAAATACGTCGACTCGTTCATTTGTTGG
AACAATTAGGTAAGGTAAATATCTGTTAAACATGAAATATTAAGTAAATA
ATAACATAAGAATACTTCTTTATTTTAGACGATTAAATATAAAAAAATGT
CAGATACTGAAAAAGAAATCGAAGATGAGAAAATTCAATTAAAACGTGTT
TTCTTTGGTGGTGATGGAGCGGTTGGTAAAACTTCGATGTTTCTTTATTA
TTTCGCGGAAAAGAAGCCCAACTTGAAGCATGAATATATTCCTTCTACAG
TTTCGGACGCCAATGGATCTAAGATATACACTTATAAAAACACTGGAGAA
AAAATAAGAATTTATTATATCGATTGGGGAGTTGGCAAGGACTGGGAGAG
AACAAGCCACCTTGGTTACAAAGGGGCTGCCGCTGTTGTACTTTGTTTTT
CTATTGGATCTAGGAGCAGTTTTGAAAACATTGAAGAGTATTGGTACCCA
TTCATGAAAAAATATGCATCAAAAGCACCCATTGTGTTGTGTGGTACAAA
AACAGATATGAGAACTGACGAGTTAGCAAAGCATAATCAAAAACCAATAA
CTAATGTTGAAGGTAAAAAATTGGCTCAAAAAATTAAAGCTGTAGGTTAT
TTTGAATGCTCAAGTGTTGAAGGAAGAGGAGTAAAAGAACTTTTTGATGC
AGCAGCAGAGGCTACTCATCCTGATATTACCAAAACCAAATCAGAAGAAT
GCTCAGTTATGTAAATTGCACACTCGATCGGGCTTCTGATTAAGGATATT
AAAACAAAAGAATCACTCGTGCTAAATTATTCTCGAATTGCACTCGTTAT
CATGTGATCACATATGCAGAGCTTTTTTTACTGAAATAATCTTATTATTG
TTGTTGTTAATTATTGTTAGTGCAGTCAAATCTCTATAACTCCAACCTGC
ATGGAAA Coding sequence (CDS) from alignment at scaffold_225:98994..105800- >TCONS_00053063 ID=TCONS_00053063|Name=TCONS_00053063|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_225:98994..105800- (Clytia hemisphaerica) GTTATTTTGAATGCTCAAGTGTTGAAGGAAGAGGAGTAAAAGAACTTTTT GATGCAGCAGCAGAGGCTACTCATCCTGATATTACCAAAACCAAATCAGA AGAATGCTCAGTTATGTAAAAAAATATGGCACAAAATGAAACAGTAACAC TAGAATGCATCAGAAAAGAAATCGGAGATGAGAATTTACCAGTAAAAGGT GTTATGTTTGGTGGTGATGGAGCTGTCGGTAAAACCTCCATGTACCTTTA TTATTTCCTTGAGAAAAAGGAGCCTAAATACATACCTGTTAAAGTTGAAA CTGACTATGGACCAAAAATATACAAATATAAAAAAACTGGAGAAAAAGTA GGGATTTATTATGATGATCATGAAGGAGGCGGCGAGGACTGGGATCGGCT ACGTCATCTTGGTTATGAAAGAGCTGACGTTGTAGTTCTTTGTTTTTCTA TTGGGTCTAGAAAGAGTTTTGATAACATTGAAGAATATTGGTACCCTTTT GTACAAAAACATGCATCAAAAGCACCCATTGTGTTGTGTGGTACACAAAC AGATATGAGAACTGACCAGTTCTATCTTGATAGGTTAGCAGAGCATAATC AAAAACCAATAACTAATGTTGAAGGTAAAAAGCTGGCTCAAAAAATTAAA GCTGTAGGTTATTTTGAATGCTCAAGTGTTGAAGGAAGAGGAGTAAAAGA ACTTTTTGATGCAGCAGCAGAGGCTACTCATCCTGATATTACCAAAACCA AATCAGAAGAATGCTCAGTTATGTAAAAAAATATGGCACAAAATGAAACA GTAACACTAGAATGCATCAGAAAAGAAATCGGAGATGAGAATTTACCAGT AAAAGGTGTTATGTTTGGTGGTGATGGAGCTGTCGGTAAAACCTCCATGT ACCTTTATTATTTCCTTGAGAAAAAGGAGCCTAAATACATACCTGTTAAA GTTGAAACTGACTATGGACCAAAAATATACAAATATAAAAAAACTGGAGA AAAAGTAGGGATTTATTATGATGATCATGAAGGAGGCGGCGAGGACTGGG ATCGGCTACGTCATCTTGGTTATGAAAGAGCTGACGTTGTAGTTCTTTGT TTTTCTATTGGGTCTAGAAAGAGTTTTGATAACATTGAAGAATATTGGTA CCCTTTTGTACAAAAACATGCATCAAAAGCACCCATTGTGTTGTGTGGTA CACAAACAGATATGAGAACTGACCAGTTCTATCTTGATAGGTTAGCAGAG CATAATCAAAAACCAATAACTAATGTTGAAGGTAAAAAGCTGGCTCAAAA AATTAAAGCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053063-exon-scaffold_225-1575043694:105262..105800 | TCONS_00053063-exon-scaffold_225-1575043694:105262..105800 | Clytia hemisphaerica | exon |
TCONS_00053063-exon-scaffold_225-1575043694:98994..99305 | TCONS_00053063-exon-scaffold_225-1575043694:98994..99305 | Clytia hemisphaerica | exon |
TCONS_00053063-exon-scaffold_225-1510915933:105262..105800 | TCONS_00053063-exon-scaffold_225-1510915933:105262..105800 | Clytia hemisphaerica | exon |
TCONS_00053063-exon-scaffold_225-1510915933:98994..99305 | TCONS_00053063-exon-scaffold_225-1510915933:98994..99305 | Clytia hemisphaerica | exon |
TCONS_00053063-exon-scaffold_225-1491911889:105262..105800 | TCONS_00053063-exon-scaffold_225-1491911889:105262..105800 | Clytia hemisphaerica | exon |
TCONS_00053063-exon-scaffold_225-1491911889:98994..99305 | TCONS_00053063-exon-scaffold_225-1491911889:98994..99305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_225 | supercontig | scaffold_225:98994..105800 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0005622 | intracellular |
Vocabulary: Biological Process
Term | Definition |
GO:0007264 | small GTPase mediated signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007264 |
small GTPase mediated signal transduction |
cellular_component |
GO:0005622 |
intracellular |
molecular_function |
GO:0003924 |
GTPase activity |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00053063 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 5.779e-38 Identity = 74/187 (39.57%), Postives = 107/187 (57.22%), Query Frame = 2
Query: 95 GDGAVGKTSMYLYYFLEKKEPKYIPVKVETDYGPKIYKYKKTGEKVGIYYDDHEGGGEDWDRLRHLGYERADVVVLCFSIGSRKSFDNIEEYWYPFVQKHASKAPIVLCGTQTDMRTDQFYLDRLAEHNQKPITNVEGKKLAQKIKAVGYFECSSVEGRGVKELFDAAAEATHPDITKTKSEECSVM 655
GDGAVGKT + + Y K +Y+P V +Y + GE + D G ED+DRLR L Y + DV ++CFS+ S SF+N++E W P + H K P +L GTQ D+R D +++LA++ QKPIT +KLA+ +KAV Y ECS++ +G+K +FD A A KS C ++
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPT-VFDNYAVTVMI---GGEPYTLGLFD-TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL 191
The following BLAST results are available for this feature:
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