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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053066 ID=TCONS_00053066|Name=TCONS_00053066|organism=Clytia hemisphaerica|type=transcript|length=839bp
tatacTTAATCTCTATTTTAGACAGTTGTGATAATACAAAAATATGGCAG
ACAGTGAGATTGAAGCATGACGGATTCAGAAGAAACGAGGAAAAAAATCA
AGGATGAAAATATGCTAGAAAAGTGTGTAATGTTCGGTGGTGATGGAGCG
GTTGGTAAAACTTCGATGTTCCTTTAttatttctttgagaaaaaggAGCC
TAAATACATACCTGTCAAAGTTGAAGGCAACCATCGACCAAAAATATATA
CATATAAAAGAACTGGAGAAAAAGTAGGGATTTATTATGATGATCATGAA
GGAGGCGGCGAGGAATGGCATAGATTACGTCATCTTGGTTATGAGAGAGC
TCATGTTGTAGTCCTTTGTTTTTCTATTGGATCTAGAAGAAGTTTTGATA
ACATTGAAGAATATTGGTACCCTTTTGTACAAAAACATGCATCAAAAGCA
CCCATTGTGTTGTGTGGTACACAAACAGATATGAGAACTGACCAGTTCTA
TCTTGATAGGTTAGCAGAGCATAATCAAAAACCAATAACTAATGTTGAAG
GTAAAAAGCTGGCTCAAAAAATTAAAGCTGTAGGTTATTTTGAATGCTCG
AGTGTTGAAGGAAGAGGAGTGAAAGAACTTTTTGATGCAGCTGCCGAAGC
GACGAACCCAAATGTTACAACTAATTCTAAGCCAGGAAAATGCTTTTTAA
TGTAGACTAACCAAACTCGCACTATGCATCAATTTTGACGGTTATTAAAT
CGATTTGCAACATCCTATATAGAAAAGCAAATCGTCACGAGGACGAAATT
ACGAAATTGACTTCATTTCCCTTTGAAAGTAcaaagagc Run BLAST on NCBI transcript from alignment at scaffold_225:105006..107878- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053066 ID=TCONS_00053066|Name=TCONS_00053066|organism=Clytia hemisphaerica|type=transcript|length=2873bp|location=Sequence derived from alignment at scaffold_225:105006..107878- (Clytia hemisphaerica)
TATACTTAATCTCTATTTTAGACAGTTGTGATAATACAAAAATATGGCAG
ACAGTGAGATTGAAGCATGACGGATTCAGAAGAAACGAGGAAAAAAATCA
AGGATGAAAATATGCTAGAAAAGTGTGTAATGTTCGGTGGTGATGGAGCG
GTTGGTAAAACTTCGATGTTCCTTTATTATTTCTTTGAGAAAAAGGAGCC
TAAATACATACCTGTCAAAGTTGAAGGCAACCATCGACCAAAAATATATA
CATATAAAAGAACTGGAGAAAAAGTAGGGATTTATTATGATGATCATGAA
GGAGGCGGCGAGGAATGGCATAGATTACGTCATCTTGGTTATGAGAGAGC
TCATGTTGTAGTCCTTTGTTTTTCTATTGGATCTAGAAGAAGTTTTGATA
ACATTGAAGAATATTGGTACCCTTTTGTAAAAAAATATGCATCAAAAGCA
CCCATTGTGTTGTGTGGTACAAAAACAGATATTAGAACTGACGAATTCTA
CTTAGAAAGGTTGGTAAAGCAATATGGAAAACCAATGAGTATAATCGAGG
GTAAAAAATTGGCTCAAAAGATTAAAGCTGTAGGTTATTTTGAATGCTCA
AGTGTTGAAGGAAGAGGAGTGAAAGAACTTTTTGATGCAGCAGCAGAGGC
TACCCATCCTGATATTATCAAAACCAAATCAGAAGAATGCTCAGTAATGT
AAATTACACTCTCGATCGGCTACTGGTCACTCACTGATTGATAGCCATTT
TGACTTTAGTTGATTCAAGCTTTCATAAATATAATAATTAGACTAATACT
CTTAGAGTATTTTTATATTTTGTCTTAGTTTCAAGAATTGAATCAGGCTT
TACTTTTTGATTTTTTGTATAATCACACAATGAATTTAATTCAATTGATA
AAAGTTTTTAAATAGTATTTTTGATAAATTTATTTATATTATAACTTTTA
ATGCCACACGCTCACACTTTTATACACAACAAAATCTCTTAACTATATTT
TTCTTGTGCTATTCTTCAAAATTTCAAAAAATGAGCTTAGTTATATGAGA
CGGGTATTTTGATGTGTCGTGACACTTACAAGGTTTAAAATGAGAAGCAC
TGCTTTATTGTTATTTGAGTGTCGTGTTTACTGTTTATTTCATGAAAGAG
CAAATTATGCCTGTTAAGTTTCGATATATTTTAGCTTTGTAGTTCATACT
CCTTCCTACCCTGGGTAAAAATCATTCCAAATGCTTTCACAAAGCCCTTT
AATTTTTTAATGAAATTTCGTAATATGATAAATTAAAAGCAGGCGCCAAG
AACAATTGGGGTGTTTTTCCACTGGCGGCTTAAGCTAACAGGATTAACAG
AGCGTGTAATAAAACGCTGAATAGCCCAAAACTATTCATATAAGTTGTGA
ATGAAAAGAGATGGTTACACGTTTATGTTTTCTTTTGTAAAAAATAATTC
ATCTCCCTCACCAAATCTTTTGTATTTCCTGATCCGCCTATCCTTGCTCT
TTTGTTCTTTCATACGTGCCCTCGACCATGTATTAGTGGGTTAGAAAATG
CGTGAAAAATACAAAAGATTCAACGACTTTTCTCCTGCGTTGCTTTGGGA
AATACAATATTTTTCTGAAAAGAAAAAATTAGCGTGCAACCATCTCTTTT
CATCCAAAAATTATATGAATAGTTTGGGCTATTTATCCTTTTATGAAAAA
GTTATATTAATCCAGTTAGCTTAAGCCGTCAGTGGAAAAACATCCTTATT
GAACCGGGCAATTAAAAAATAATCATATTGCGAGTGTTCTAAAAAGCTTG
CGGGAGTGGTTGAAGAAATCTTTAAGGTAGTAACTGTGTTTGGAACAATA
TGGTTCTCAAAGAAGAACCTGCATCGAAAATGAAAATTTTAATTATGTTC
GTTAGTTTCGTAACAGAAATAAGTTATTACAACATTTGATTTTTCAGGCT
AGTCATTCCATAAATTTGTTAAGTGGATTTGCTTTGACAATGTCTAATAT
TATGAGTCAAACAGAAATATGTGTATATATATTTTATATGTATTTTTAGG
ATACTTTCCTGTTTTAGAACGAATATTACAAAAATATGGCACAAAATGAA
ACAGTAACACTAGAATGCATCAGAAAAGAAATCGGAGATGAGAATTTACC
AGTAAAAGGTGTTATGTTTGGTGGTGATGGAGCTGTCGGTAAAACCTCCA
TGTACCTTTATTATTTCCTTGAGAAAAAGGAGCCTAAATACATACCTGTT
AAAGTTGAAACTGACTATGGACCAAAAATATACAAATATAAAAAAACTGG
AGAAAAAGTAGGGATTTATTATGATGATCATGAAGGAGGCGGCGAGGACT
GGGATCGGCTACGTCATCTTGGTTATGAAAGAGCTGACGTTGTAGTTCTT
TGTTTTTCTATTGGGTCTAGAAAGAGTTTTGATAACATTGAAGAATATTG
GTACCCTTTTGTACAAAAACATGCATCAAAAGCACCCATTGTGTTGTGTG
GTACACAAACAGATATGAGAACTGACCAGTTCTATCTTGATAGGTTAGCA
GAGCATAATCAAAAACCAATAACTAATGTTGAAGGTAAAAAGCTGGCTCA
AAAAATTAAAGCTGTAGGTTATTTTGAATGCTCGAGTGTTGAAGGAAGAG
GAGTGAAAGAACTTTTTGATGCAGCTGCCGAAGCGACGAACCCAAATGTT
ACAACTAATTCTAAGCCAGGAAAATGCTTTTTAATGTAGACTAACCAAAC
TCGCACTATGCATCAATTTTGACGGTTATTAAATCGATTTGCAACATCCT
ATATAGAAAAGCAAATCGTCACGAGGACGAAATTACGAAATTGACTTCAT
TTCCCTTTGAAAGTACAAAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053066-exon-scaffold_225-1575043694:107477..107878 | TCONS_00053066-exon-scaffold_225-1575043694:107477..107878 | Clytia hemisphaerica | exon |
| TCONS_00053066-exon-scaffold_225-1575043694:105006..105442 | TCONS_00053066-exon-scaffold_225-1575043694:105006..105442 | Clytia hemisphaerica | exon |
| TCONS_00053066-exon-scaffold_225-1510915933:107477..107878 | TCONS_00053066-exon-scaffold_225-1510915933:107477..107878 | Clytia hemisphaerica | exon |
| TCONS_00053066-exon-scaffold_225-1510915933:105006..105442 | TCONS_00053066-exon-scaffold_225-1510915933:105006..105442 | Clytia hemisphaerica | exon |
| TCONS_00053066-exon-scaffold_225-1491911889:107477..107878 | TCONS_00053066-exon-scaffold_225-1491911889:107477..107878 | Clytia hemisphaerica | exon |
| TCONS_00053066-exon-scaffold_225-1491911889:105006..105442 | TCONS_00053066-exon-scaffold_225-1491911889:105006..105442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:105006..107878 - |
Blast
BLAST of TCONS_00053066 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 5.022e-36 Identity = 77/198 (38.89%), Postives = 111/198 (56.06%), Query Frame = 1
Query: 121 KCVMFGGDGAVGKTSMFLYYFFEKKEPKYIPVKVEGNHRPKIYTYKRTGEKVGIYYDDHEGGGEEWHRLRHLGYERAHVVVLCFSIGSRRSFDNIEEYWYPFVQKHASKAPIVLCGTQTDMRTDQFYLDRLAEHNQKPITNVEGKKLAQKIKAVGYFECSSVEGRGVKELFD----AAAEATNPNVTTNSKPGKCFLM 702
KCV+ G DGAVGKT + + Y K +Y+P V N+ T GE + D G E++ RLR L Y + V ++CFS+ S SF+N++E W P + H K P +L GTQ D+R D +++LA++ QKPIT +KLA+ +KAV Y ECS++ +G+K +FD AA E P K +C L+
Sbjct: 5 KCVVVG-DGAVGKTCLLISYTTNKFPSEYVPT-VFDNYA---VTVMIGGEPYTLGLFDT-AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK-----KSRRCVLL 191
The following BLAST results are available for this feature:
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