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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053067 ID=TCONS_00053067|Name=TCONS_00053067|organism=Clytia hemisphaerica|type=transcript|length=1249bp
GCTTTGTTGATGTGTTgtcctttttttcaatttgTTGTGATAATACAAAA
ATATGGCAGACAGTGAGATTGAAGCATGACGGATTCAGAAGAAACGAGGA
AAAAAATCAAGGATGAAAATATGCTAGAAAAGTGTGTAATGTTCGGTGGT
GATGGAGCGGTTGGTAAAACTTCGATGTTCCTTTAttatttctttgagaa
aaaggAGCCTAAATACATACCTGTCAAAGTTGAAGGCAACCATCGACCAA
AAATATATACATATAAAAGAACTGGAGAAAAAGTAGGGATTTATTATGAT
GATCATGAAGGAGGCGGCGAGGAATGGCATAGATTACGTCATCTTGGTTA
TGAGAGAGCTCATGTTGTAGTCCTTTGTTTTTCTATTGGATCTAGAAGAA
GTTTTGATAACATTGAAGAATATTGGTAcccttttgtaaaaaaatatgca
TCAAAAGCACCCATTGTGTTGTGTGGTACAAAAACAGATATTAGAACTGA
CGAATTCTACTTAGAAAGGTTGGTAAAGCAATATGGAAAACCAATGAGTA
TAATCGAGGGTAAAAAATTGGCTCAAAAGATTAAAGCTGTAGGTTATTTT
GAATGCTCAAGTGTTGAAGGAAGAGGAGTGAAAGAACTTTTTGATGCAGC
AGCAGAGGCTACCCATCCTGAtattatcaaaaccaaatcaGAAGAATGCT
CAGTAATGTAAATTACACTCTCGATCGGCTACTGGTCACTCACTGATTGA
TAGCCATTTTGACTTTAgttgattcaagctttcataaaTATAATAATTAG
ACTAATACTCTtagagtatttttatattttgtcttAGTTTCAAGAATTGA
ATCAGGctttactttttgattttttgtataatcacacaatgaatttaatt
caattgataaaagtttttaaatagtatttttgataaatttatttatatta
taaCTTTTAATGCCACACGCTCACACTTTTATACACAACAAAATCTCTTA
ACTATATTTTTCTTGTgctattcttcaaaatttcaaaaaatgagctTAGT
TATATGAGACGGGTATTTTGATGTGTCGTGACACTTACAAGGTTTAAAAT
GAGAAGCACTGCTTTATTGTTATTTGAGTGTCGTGTTTACTGTTTATTTC
ATGAAAGAGCAAATTATGCCTGTTAAGTTTCGATATATTTTAGCTTTGTA
GTTCATACTCCTTCCTACCCTGGGTAAAAATCATTCCAAATGCTTTCAC Run BLAST on NCBI transcript from alignment at scaffold_225:106639..114370- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053067 ID=TCONS_00053067|Name=TCONS_00053067|organism=Clytia hemisphaerica|type=transcript|length=7732bp|location=Sequence derived from alignment at scaffold_225:106639..114370- (Clytia hemisphaerica)
GCTTTGTTGATGTGTTGTCCTTTTTTTCAATTTGGTAAGTAAATTAAGCT
CTTCTTATTCCATATTTTTATTCTATGTTTTTATGAATACAATACAATAG
GCCATTTCATTTCCTCCGCCAGACGGTGTCAATCGAACGAATCAAATGCC
AGATTAATTGAACACAAGCGAATCGTAATCGTATATTACCAAGGATTTGC
TGTTCAATTACGTTAGCCTTTCCATCCGCCATCTTGAATTGTATGCAAAA
ATACAGGGAACGAAAAAGTTGTGGTTGGACAAAGCCAACAAAGCATCTTA
TAAAGAAATATTATAATTCATTAGAACAATAAAAGATGGAATTTCTAATT
CCAAAAAGAAATATTTACCGAACAACAAAAGCCTTTCAGAAATTTGTTCT
TAAAGACATAGCATATTCTGTCAGTCTGTTTTCATGCCATTAAAAAATTC
CACAAAGACGGAGTACACACATCAACTTTCAAAACACGCAAACTGAAAGC
AGTAATTATGACGTCACACATTCAGCGGGTTCAGATCAATGTTTTGATTT
GATCGTTTTGCGGTTCTATTCCTAGGAGAATAATTTACTGTCAGCTGAAT
AAGGATTATTTTTGTACGTTTGCGGGTGATTTTTCAGCTTAAGTTTATGT
CTAATGTTATGGTATTTTGAAGTGCTTGTTCTAAGAGATGGGCGAATTTG
ATTATTTCTAGTTTTCAAAAGAAACAAATTTAATCTTTCTTCTACAAGAT
TACACTTTAATATAAGGCGACTATCTAAAATATGTTCTGTTCGCGTCATA
AAACAACTTAAAATCCAGTCGGTCGGTCGGTCGGTAGTAGATTTAGTCGG
GTTTTCAAAATCTAATAGATCCCGAAGAATCAAGTCGGCAATCAGCAAAA
TCTCTTGCCGCCATCTTTGATTTGCCAAATTCAATGTGCGCAACGCATGT
GTGAACCTTAAAAGCGGACCTTATTTTCGGCTCTCGGGGGTATTGGCCCT
ACCGCGTTGCCGAATTTCGACTTGAAAATTTCAATAAGGGTACATGAAAA
TCTCAAACAGGACTCAATGTGGGTTAGGTAACAAAAACTCTTAGCGAATG
ATGATTCAAAGAAGTGCTTAGCTATCAAAAACTTTTTCCGACATTTTTCC
GACTTGTCCGACTCGGGATTTATGTTTTGAAGGTGAGTCAGTCAGGTGAC
GCGAACGGAACATATTTTAGATTGCCGCCTAATGCCAAATATGGATGTAA
GTTTTATTTAATACTTTCTTTTTGCATATCTTTTGCTTACTTTCTAAGGG
AATTTCACCACGGCAATTCAGCCACCATAATTTCTGCATACAATTCAATA
TGGCGGATGGAAAGGCGAAAAGGTCTATTAGCTTGCTTTATTTCGCTTGT
ATGGTACTCACATGCTCTCACTCTTAATCTTATGTGATTTTCCGAGAGCC
TATTACTCTCGGGTACCTAATAGCCGTCCCCCCGCCGCTAATTAATTTTT
CGAAAATTTTCCACCTAGGACATTTTTATTCCAACCCCCCCGCTTATTAA
TTTTTGGGAAAATGTTTTTGAAAGTTCCCTTTTTTGTCTTAATTCTGCTG
TATTAGCCTCCTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGGCTATTAGGTACCCGAGA
GTAGAAGCTGCCAAGGCTAAAGCTCTAAAGGAGTGGTCCAATTTAGTTGC
ATCTGGTTGGTTTGGAGAACGGGACAGCCTACTATTGAATAACTAATTAC
TCCACAACAGTTACCTAGAGACAAGATAATTTATCACGTTTTTATTGGCT
GAGGGAAAGTAATTTTCTTTCTTTCTCTTTTACCACCAATTTTAAAAATT
TGGTATAAATAACAAGCAATATGTTCCCTTTAAAAATGAATATAGCCTGA
TATAGCGTTGAAAATATATGTTACTTTTTGTTTTGAAAGATAGACACCTA
TATTATTAACTAGAGCCACGGGAAAATGATACGTTGGAGAGAGGCTAAAA
ACCAAGAATACCGACAAAATGAAGGTTTGATTGAAGGATCGATCGGTCTA
GGCTGCAAAAGAAAAGCAGAAATCCCAACTTCGGGATCTGAGACGAAAAA
AAAATTCAGCGAGTGAATAAACCAAAAATGTGTTTATCTATATACTGTAT
ATACTGTGTATAATAAAAATATATATAAATTATCTTTTTTAACGTGTAAG
AATTAACACATGTCGTAAAGAACCCTACCAGGAAAGGTGACCCCTGTAAG
AAATTGTAAAAATGGAGGTAGTGCAGAGGGAGCTCAAAAGTTCAAAAATG
GACTATGTAGGTCTGAAGGGAATAGGAATGATTGAGTTGTAACTTTAAAT
AAACCAAAATATTGAAAATAAAACAGTGGTTTGGAAACTAAGGAGAGGTC
AGCCTTCTGGAATAAAAGATATTTTGCAATCAATAAATACATTCAAGAGA
GAGAAAAAAAAAACCTATTATCTGGTACCAGACTGGCCCTAACGCTTCAT
ATATATTTGAAAATCTTTCAAATTCAGTACGTGAATAGAGCAGTAGAAAA
TACAACTTTTCTATTTTTCCTTCCAGAAAGTTCCAGAAATGAAAATAAAG
GGATAATGATAGTTGAATACTATCCACTACTGATAATCTGCGCCACTAGC
GTAAAGCTATAAGAATCTGTAAGAATCTCTTCATGCGTACTCTTTGCTTG
GGATAATGATTGATTTTTTATCATCAATGTACACAATTGAAGAGAGGAAG
AGCTCCATTATCAAGTCATACAGTGAAAAGGCATGGAAAATGGTCTGGCT
CAATTTTTTCCCCTTTTTGAAACTGCAATGTGATTTTCTACATTACTCAC
AACGTTTAAAAAGTTGCATTACCTTATTGGAACTAATTTTCACGGGAATT
AATTTTAGCGGTTTATTAAAACCCGCGAAATGCAATTTTCGAATATTTTT
TTCGACCGCAAAAATTAGTTCCCGCAAAAATTAGTTCCAGTAAGGTATAT
AGTAAAAACATTAGAATTTCTGTCCAACTATATTCACTCAGGAGATTTGA
GTGGCAGAGCAGCATTATGCATTTCGTCCTTATTAGGACTCGTCAGCACT
GCATACTGCACCCTGGCAGGCCAGATCGATTTAGCCAGCATCTCTAAACC
ACAAAATCACTTTTGGTTCAAACGGAGAGAAATAGTGAACAGAAGGGTAA
TTCCCTATGGAATTCTTTATTGACTCCTTTGGAGGCAAGCTTTACCGTCT
CAAGAGGGAGGAAAGCCTCAACACTGCATGAGACGCATATTTTTGGTCAG
CAATAAAAGTTTCAACTGTTTATACATTATGTCTTGAAGCTAGTCACACT
AGCGTCCCACTGAATTGTGTATCATAAGATTGATGCTGCGGTAAGCGCTT
TATTGCTTACTAGACTTACAAGCAAAATGATGCACCACAAAACTTTTAAA
GGAATCAATGAAAAAATAAACTGGTGCTTTATAATGAAATTAACATTAAC
ATTAAAATAACTAATTTTGTGCTTTAGATAAAAAGATTTGGAGAGAGCCA
ACCTCAAAAACTAATTTAAAGTTAACTTAACTTTACAAGAAAAAGAGTTC
TCTGTGCTCGTGTTTTGATTGGCTTAGAAAGCTTGAGAAATGATGTTGTG
ATGACTTTTGGGAATCACGTCAAAAGACAAAGAATATTAAGGGATGAAAA
GATAAACATTTTTTCAGCAAAAATTATTTTGACACTTCATAACATTATGA
GAAGGGGTTTGTAATTGTAACCTGGCTCTCTCACCAACAGTTTAATAGAA
AAGAGCCAGAGTCAGATTTTTTGGCTAGATTGATGAGACCTGTTGTTGTG
AAATACATTCTGTAGACGAGTTGTATCTTCAGAAACCTTGATTACCTAGT
TTGACTAATTGCCCTTTGACTAAAAGCCCTGGTTTTTTATGTTTGAATGT
CAAGTTAGGGTCTGTAGAAAGTGGCTTGGGGTATTTCTTGTTGAAAACTA
TAACCACAGTATGTAAATTCAACATTGTTGACTTTTTAACAGTGTTATTG
TTGTTATCGTTTCCATCACATTTGAGCTATAAGAAATCCATTGCTCACTA
TTTCATAAGATGAAAAAAGGAAATGACATAATCAGCATATTTTTATTATT
AGAGAAAGGCTATTTTCATCTTTTCTTTTGATCAAATATGCTGGGGTAAG
CTTTTCTCATGCTGCCTTCATTCTGTTTTTTACAAAATACAAAATTGCCT
ATGTCAGTGAATAAAGAATCATTAAATTATTGAAAGCTTGGAGCCCTTAA
AAATTCACATTTTCTAATTCAATACTTGTGATTTTAAAAAGTACTGTGCA
TTTAAATTTGAAATGGAGAGAGATTATAAGACTGTTGTTTTTGGTGGAGA
ATGGAATATTGGGAAATCTTCAATGTTTATATATCATTGGTATGGTGAAC
AAAACCCACAATATATTCCAACCAAAGTTGATCCTTACAATGTTGACGAG
TACCCCGTTGGTGAAAATGGAGAGATATTGAAAGTTTCATTTATAGACAA
TGAAGGTGGAGGTGAAGATTGGCCTCGATTTCGACATTTTGGATATTTGA
TGGCGAATGTTGTTGTGCTTTGTTTTTCAATCGCTGCACCAGAGACTTTT
GAGTTGATTGAAGAATATTGGTATCCATTTACTCAAAAACACTGTCCAAC
AGCTAAACTATTTTTGCTTAGTACAAAAAAGGATTTAAGAAACGATGAGA
AAGTTATACGAGAACTTTCAAAAGCTGATGAAAGGCCTGTTACTTATAAC
CAGGGTAAAAATATGGCTAACAAAATTGGAGCTATTGGGTATTATGAGTG
TTCTACAAGACTAGGGGAAGGGGTTGAAGAAATCTTTAAGGCTAGTGCGA
AAGCTGCATATGGAACAATTGATCCAAAACCTAAACTGTATAGAAAAAGA
AAATGCTTGATTATGTAATTATATGTATTTCATTTTTCTTGCATTCTTGT
AATTTTTTGATTCATCCATCCAACCATCCAACCATCCATCTGTTTCTGAG
CACATCATAGATAAGATATTTTATAAGAACATTTATTTTTCAAAATATAC
ACGTTATTATGGAATAAACGTTTTGGTACGTTTATTTTTTTGTTTTTAAG
AAGGGCGTTTATTCGAGGGGAGGGGGCTTTATGAAATGATTTTTAACCAA
AATCACTGTAATGAATTGTGTGTGAGCCTTGTTTTGCCTTTTCAAAGCCA
TTTGAAGGATAATAAAAGACTGAATATCTATGCTACAATTTCTTCTTTTC
TCTACCGATGGCAAAAAAAGCATGGTTTGGGCTATTGATCTCCATCTCCA
AATGACAGTTGAAAACCCAGCTAATGAAACTTTCTTATTCTTTCAAGTTT
CAAGTTTCTAGAACTTGTTTCAAATTTTTAGTAAGTGAGGACAGTACTAC
ATTCGAATTTCCTACTGTATTTTTTAGATTAATTCATAATAAATAAATAC
TTAGTGATTTTTGCAATTCCAAATCCACCAATAAACGCCACCATTAATTA
ATCTCAATGAAACATAATAAAAGTAGAAAATAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAATAGCGTGGAAG
CTTTGCTCGAAGAAGAGCGATTGAAGCGCGCGTAAGTGGAGACCGGCCTT
TAACGACGACGACGACCAGCGGGAAAAAAATCGTCGAACCGATTTGAAGA
GTCACCGGGGCTGACTAATAACAATAACAAATTTAACAAAAATATACTTA
ATCTCTATTTTAGACAGTTGTGATAATACAAAAATATGGCAGACAGTGAG
ATTGAAGCATGACGGATTCAGAAGAAACGAGGAAAAAAATCAAGGATGAA
AATATGCTAGAAAAGTGTGTAATGTTCGGTGGTGATGGAGCGGTTGGTAA
AACTTCGATGTTCCTTTATTATTTCTTTGAGAAAAAGGAGCCTAAATACA
TACCTGTCAAAGTTGAAGGCAACCATCGACCAAAAATATATACATATAAA
AGAACTGGAGAAAAAGTAGGGATTTATTATGATGATCATGAAGGAGGCGG
CGAGGAATGGCATAGATTACGTCATCTTGGTTATGAGAGAGCTCATGTTG
TAGTCCTTTGTTTTTCTATTGGATCTAGAAGAAGTTTTGATAACATTGAA
GAATATTGGTACCCTTTTGTAAAAAAATATGCATCAAAAGCACCCATTGT
GTTGTGTGGTACAAAAACAGATATTAGAACTGACGAATTCTACTTAGAAA
GGTTGGTAAAGCAATATGGAAAACCAATGAGTATAATCGAGGGTAAAAAA
TTGGCTCAAAAGATTAAAGCTGTAGGTTATTTTGAATGCTCAAGTGTTGA
AGGAAGAGGAGTGAAAGAACTTTTTGATGCAGCAGCAGAGGCTACCCATC
CTGATATTATCAAAACCAAATCAGAAGAATGCTCAGTAATGTAAATTACA
CTCTCGATCGGCTACTGGTCACTCACTGATTGATAGCCATTTTGACTTTA
GTTGATTCAAGCTTTCATAAATATAATAATTAGACTAATACTCTTAGAGT
ATTTTTATATTTTGTCTTAGTTTCAAGAATTGAATCAGGCTTTACTTTTT
GATTTTTTGTATAATCACACAATGAATTTAATTCAATTGATAAAAGTTTT
TAAATAGTATTTTTGATAAATTTATTTATATTATAACTTTTAATGCCACA
CGCTCACACTTTTATACACAACAAAATCTCTTAACTATATTTTTCTTGTG
CTATTCTTCAAAATTTCAAAAAATGAGCTTAGTTATATGAGACGGGTATT
TTGATGTGTCGTGACACTTACAAGGTTTAAAATGAGAAGCACTGCTTTAT
TGTTATTTGAGTGTCGTGTTTACTGTTTATTTCATGAAAGAGCAAATTAT
GCCTGTTAAGTTTCGATATATTTTAGCTTTGTAGTTCATACTCCTTCCTA
CCCTGGGTAAAAATCATTCCAAATGCTTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00053067-exon-scaffold_225-1575043694:114337..114370 | TCONS_00053067-exon-scaffold_225-1575043694:114337..114370 | Clytia hemisphaerica | exon |
| TCONS_00053067-exon-scaffold_225-1575043694:106639..107853 | TCONS_00053067-exon-scaffold_225-1575043694:106639..107853 | Clytia hemisphaerica | exon |
| TCONS_00053067-exon-scaffold_225-1510915933:114337..114370 | TCONS_00053067-exon-scaffold_225-1510915933:114337..114370 | Clytia hemisphaerica | exon |
| TCONS_00053067-exon-scaffold_225-1510915933:106639..107853 | TCONS_00053067-exon-scaffold_225-1510915933:106639..107853 | Clytia hemisphaerica | exon |
| TCONS_00053067-exon-scaffold_225-1491911889:114337..114370 | TCONS_00053067-exon-scaffold_225-1491911889:114337..114370 | Clytia hemisphaerica | exon |
| TCONS_00053067-exon-scaffold_225-1491911889:106639..107853 | TCONS_00053067-exon-scaffold_225-1491911889:106639..107853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:106639..114370 - |
Blast
BLAST of TCONS_00053067 vs. Swiss-Prot (Human)
Match: RAC1 (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.103e-32 Identity = 70/194 (36.08%), Postives = 110/194 (56.70%), Query Frame = 1
Query: 130 KCVMFGGDGAVGKTSMFLYYFFEKKEPKYIPVKVEGNHRPKIYTYKRTGEKVGIYYDDHEGGGEEWHRLRHLGYERAHVVVLCFSIGSRRSFDNIEEYWYPFVKKYASKAPIVLCGTKTDIRTDEFYLERLVKQYGKPMSIIEGKKLAQKIKAVGYFECSSVEGRGVKELFDAAAEATH-PDIIKTKSEECSVM 708
KCV+ G DGAVGKT + + Y +YIP V N+ + G+ V + D G E++ RLR L Y + V ++CFS+ S SF+N+ WYP V+ + PI+L GTK D+R D+ +E+L ++ P++ +G +A++I AV Y ECS++ RG+K +FD A A P +K + +C ++
Sbjct: 5 KCVVVG-DGAVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMV---DGKPVNLGLWD-TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
The following BLAST results are available for this feature:
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