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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053101 ID=TCONS_00053101|Name=TCONS_00053101|organism=Clytia hemisphaerica|type=transcript|length=2396bp
CTggcccaaaaattattttttttttgaaaatcgaactCCATCACATTTGG
TAATCACTATTTTGCACCTTCGTACCAAAAATTACagaattcctatgatt
caatcccgagaaaagttggtaacaaacgaacggacgaacagaggttgatt
tataggacctccaggtaggttcAATAATAAAGAATATGGAAACCTGccca
aaattttcaagaataaCTTTAGAACAATCCGAGCTTCGGATGcagtagac
tatgctatagtcaaAGACGAACCACTatttaagaaaaaagcccaaagctg
aagaaaattcGCGAAcagttttttttgccgaaaagagtttacagtcggta
gagttgccagtcgccatttttttccgtataccgccataacgccataccac
catattttcccgcctttactattaCTGTAatggacgataacatcgtctat
ttTAGAGGCTGATTTTGAATGTTCGGCAAGTTGAAAACGATTCGATTTAA
AGACCTCAAAATCTTTCCATACTCTAAATCTCCTATTCATTCCAGGTTCT
CAAGGGTCATCAATGTCTCCAACAATGAAAGCACCAGAGACTCAAGAAAT
AAATGCTGACAATGGTGAGATTGATGCAGAAAACGAGGAGGAGGGTGTTA
TGACTCAAGAACTCAAAGATGAAATTGATCAAGACATTTTGGAAGGTGAA
AACAACGGCAACGAAGAAAATGACGATGAGGAAGACCTTGCAAAAAGTCG
TGAAAAACGTTTTATTCGGTTCCGTAGAATTAGAGTACCACTAGCAGGCT
GCTATTTTATGGGATGCGTGCATCCTAGAGTACCACGAATTCGTATTAGC
CTTCGAAGGGTCCGGGATCAAGTCAAATGCCCCACAAGCTCCTGGTATTG
CAAAATTGGCTTGccacaaaatcaagaaaaattgtAGATGTGGATTTTTC
GGATGAACTGTTCAATTtgacttataaaattattctatcttttttaaatt
agatGGGTTAGATTTATAGAATATATAAACTTTGATAGATTTacaattaa
ggtcataatatattgagaattttggttattttaacgtttttcaagattta
aagttctggcgagaaagtcgatttttggctatctttttaattNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcgaatatttcaatttggg
aggggttggcagacttccaggctatattctgagtcttattggactatttt
tgaacttttggatcctcagatcctaaggtcctaattcttaagtttcatgt
taaaattcagagttaaaactctacccttccaacctactttagagcacttc
caaatcgattgtggttcaaaaacttcccggtggatttctcttttttctca
aatattatgaccttgattgtagctgatgattgtcgtccatacgggcggca
tgaaacttaaagctctgaaacaataaatcaaagcctctttcttttaattt
gaacaaGTTCTGATATCATCGAGCACTCTCGGCAGATAGAAGAAAATAGA
CTTGTAAACTTTGATAGATAAATTTCAATACTTTGAAAGGCATAAGCCTT
GTCCCCTTTCGCCATTTTAACCTTAATGTTTTGTAGAGTAAGGTAGAGTA
AATAAAGGGATTATGAAACAATTTCATCCTTGTGTGCAAAActaaattcg
aaaagttttaaatttctcGTTTAAAAGCTCTTGTGCTCATTCTTGAGTAT
TTACATAGAAGATTTTTGAAAGGTAATCGGGCCCCCTCTCAAGTCTAAAA
ATCATATCTATTTACGAACAAATCACATGTGCCACCCCCTTCTCAtggac
ccactgggaccccttcccactggaaaattggccaaaatatcgcccccagt
ggaaaattatactccaatttatGTCCACgtcgaaaataatcaaataagca
aatcctcactgtaaaatatCGTGCtagtttttccatccccactgaatttt
atgggttgaaaacaatggaatttaaatccccagccataaaaaacaatATC
AATCCCCGTCGATTGTTTGCCTGTTATTTCCTGTTATTTCTACCCCCACC
CTTGGCAGAAACAATCCtaccggatctgtgagaagggtctgtgagaaggg
ggtatcaTATGGTTAGCCCCCACCTATACAGGTAGTGAAAATCAATCGAT
AATACTCTCCACTTACTTTCATAGAGCCATTGCATTGACATCCAATCGAT
CAACGATCACTTCAAATACAAAATCAACATCAATTAATGCTTCCTGAAGT
GTTTTAGATGTCTCTACGTCACCCTACGAAAATAATGGCACATTAGTCCA
GTTAATTAAAGAACCTTCTATCTCTTAGGGTTCGGTTACAAAAGAT Run BLAST on NCBI transcript from alignment at scaffold_226:118302..121296+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053101 ID=TCONS_00053101|Name=TCONS_00053101|organism=Clytia hemisphaerica|type=transcript|length=2995bp|location=Sequence derived from alignment at scaffold_226:118302..121296+ (Clytia hemisphaerica)
CTggcccaaaaattattttttttttgaaaatcgaactCCATCACATTTGG
TAATCACTATTTTGCACCTTCGTACCAAAAATTACagaattcctatgatt
caatcccgagaaaagttggtaacaaacgaacggacgaacagaggttgatt
tataggacctccaggtaggttcAATAATAAAGAATATGGAAACCTGccca
aaattttcaagaataaCTTTAGAACAATCCGAGCTTCGGATGcagtagac
tatgctatagtcaaAGACGAACCACTatttaagaaaaaagcccaaagctg
aagaaaattcGCGAAcagttttttttgccgaaaagagtttacagtcggta
gagttgccagtcgccatttttttccgtataccgccataacgccataccac
catattttcccgcctttactattaCTGTAatggacgataacatcgtctat
ttTAGAGGCTGATTTTGAATGTTCGGCAAGTTGAAAACGATTCGATTTAA
AGACCTCAAAATCTTTCCATACTCTAAATCTCCTATTCATTCCAGGTTCT
CAAGGGTCATCAATGTCTCCAACAATGAAAGCACCAGAGACTCAAGAAAT
AAATGCTGACAATGGTGAGATTGATGCAGAAAACGAGGAGGAGGGTGTTA
TGACTCAAGAACTCAAAGATGAAATTGATCAAGGTACGGTTAGAATGATC
TCTTTATCAAAAATCCTTTCGAGAATCGGCCCTTAAAgtgaaaacaattt
gaaatttttggattcCTTACAGACATTTTTCCAAGATTCGATCGATTTTT
GCAAACATTTAAGCCACAACTATCCCCCTTGGTCCGACCATCAATATGGC
TACACTAAAATAAGGAGGGACTAAGGGTTTTTTGGGGTTTGTGGTGTTCT
GATATTCTTTAATATAtacttatttcaattttttgcttggaaaaaaatct
gaaacgttcagtaaaatttttttctcatttcgaAGAACTCGAGTGATTGG
TTACAGCCAAATTCGAAACTCTCTTATTCTTTCTATGACTCGAAGAATAC
Ttttgtcccttgaagatcgaattagagagtgtcgactattcatgatatgc
accattgcaatgtcttccacggagccaacagttgattggttgaaagtgac
gtattgactgattttacgtcacttacaaccaatcagctattgggtccgtg
atgtaatctcagaagacattgcaattttccatatcatgaatataacatta
ttacaatcgcaaattttcTCACACTTCAACAGACATTTTGGAAGGTGAAA
ACAACGGCAACGAAGAAAATGACGATGAGGAAGACCTTGCAAAAAGTCGT
GAAAAACGTTTTATTCGGTTCCGTAGAATTAGAGTACCACTAGCAGGCTG
CTATTTTATGGGATGCGTGCATCCTAGAGTACCACGAATTCGTATTAGCC
TTCGAAGGGTCCGGGATCAAGTCAAATGCCCCACAAGCTCCTGGTATTGC
AAAATTGGCTTGccacaaaatcaagaaaaattgtAGATGTGGATTTTTCG
GATGAACTGTTCAATTtgacttataaaattattctatcttttttaaatta
gatGGGTTAGATTTATAGAATATATAAACTTTGATAGATTTacaattaag
gtcataatatattgagaattttggttattttaacgtttttcaagatttaa
agttctggcgagaaagtcgatttttggctatctttttaattNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcgaatatttcaatttggga
ggggttggcagacttccaggctatattctgagtcttattggactattttt
gaacttttggatcctcagatcctaaggtcctaattcttaagtttcatgtt
aaaattcagagttaaaactctacccttccaacctactttagagcacttcc
aaatcgattgtggttcaaaaacttcccggtggatttctcttttttctcaa
atattatgaccttgattgtagctgatgattgtcgtccatacgggcggcat
gaaacttaaagctctgaaacaataaatcaaagcctctttcttttaatttg
aacaaGTTCTGATATCATCGAGCACTCTCGGCAGATAGAAGAAAATAGAC
TTGTAAACTTTGATAGATAAATTTCAATACTTTGAAAGGCATAAGCCTTG
TCCCCTTTCGCCATTTTAACCTTAATGTTTTGTAGAGTAAGGTAGAGTAA
ATAAAGGGATTATGAAACAATTTCATCCTTGTGTGCAAAActaaattcga
aaagttttaaatttctcGTTTAAAAGCTCTTGTGCTCATTCTTGAGTATT
TACATAGAAGATTTTTGAAAGGTAATCGGGCCCCCTCTCAAGTCTAAAAA
TCATATCTATTTACGAACAAATCACATGTGCCACCCCCTTCTCAtggacc
cactgggaccccttcccactggaaaattggccaaaatatcgcccccagtg
gaaaattatactccaatttatGTCCACgtcgaaaataatcaaataagcaa
atcctcactgtaaaatatCGTGCtagtttttccatccccactgaatttta
tgggttgaaaacaatggaatttaaatccccagccataaaaaacaatATCA
ATCCCCGTCGATTGTTTGCCTGTTATTTCCTGTTATTTCTACCCCCACCC
TTGGCAGAAACAATCCtaccggatctgtgagaagggtctgtgagaagggg
gtatcaTATGGTTAGCCCCCACCTATACAGGTAGTGAAAATCAATCGATA
ATACTCTCCACTTACTTTCATAGAGCCATTGCATTGACATCCAATCGATC
AACGATCACTTCAAATACAAAATCAACATCAATTAATGCTTCCTGAAGTG
TTTTAGATGTCTCTACGTCACCCTACGAAAATAATGGCACATTAGTCCAG
TTAATTAAAGAACCTTCTATCTCTTAGGGTTCGGTTACAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053101-exon-scaffold_226-1491911889:118302..118984 | TCONS_00053101-exon-scaffold_226-1491911889:118302..118984 | Clytia hemisphaerica | exon |
| TCONS_00053101-exon-scaffold_226-1510915933:118302..118984 | TCONS_00053101-exon-scaffold_226-1510915933:118302..118984 | Clytia hemisphaerica | exon |
| TCONS_00053101-exon-scaffold_226-1575043694:118302..118984 | TCONS_00053101-exon-scaffold_226-1575043694:118302..118984 | Clytia hemisphaerica | exon |
| TCONS_00053101-exon-scaffold_226-1491911889:119584..121296 | TCONS_00053101-exon-scaffold_226-1491911889:119584..121296 | Clytia hemisphaerica | exon |
| TCONS_00053101-exon-scaffold_226-1510915933:119584..121296 | TCONS_00053101-exon-scaffold_226-1510915933:119584..121296 | Clytia hemisphaerica | exon |
| TCONS_00053101-exon-scaffold_226-1575043694:119584..121296 | TCONS_00053101-exon-scaffold_226-1575043694:119584..121296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:118302..121296 + |
Blast
The following BLAST results are available for this feature:
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