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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053113 ID=TCONS_00053113|Name=TCONS_00053113|organism=Clytia hemisphaerica|type=transcript|length=3160bpRun BLAST on NCBI protein sequence of TCONS_00053113-protein >TCONS_00053113-protein ID=TCONS_00053113-protein|Name=TCONS_00053113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=936bp MAPVAETKLPTKNEENKEKKDVDSKKDDKKAKEEAEMSEEDKQLLDELNMRun BLAST on NCBI transcript from alignment at scaffold_226:235201..286071+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053113 ID=TCONS_00053113|Name=TCONS_00053113|organism=Clytia hemisphaerica|type=transcript|length=50871bp|location=Sequence derived from alignment at scaffold_226:235201..286071+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_226:235201..286071+ >TCONS_00053113 ID=TCONS_00053113|Name=TCONS_00053113|organism=Clytia hemisphaerica|type=CDS|length=59031bp|location=Sequence derived from alignment at scaffold_226:235201..286071+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053113 vs. Swiss-Prot (Human)
Match: PSMD2 (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3) HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0 Identity = 381/574 (66.38%), Postives = 469/574 (81.71%), Query Frame = 3
Query: 411 QLLDELNMLVQRLKESNVSLHKPALESLRTQIRSSTSSMTSVPKPLKFLREHFEGLKELHKTWQESENKHFLADIVSVLGMTKPEVRDCLKYRFLGSHEPLESWGHEYVRHLXXXXXXXXXXXXXG---KTEDLIKLSSEIIPYDMKHNAEIDACDLAMEIERLDLLEKYVDKSTFQRVCLYLSSCVKYVPEPEDAKLLKCALQIFLKYECYPEALNLAIQLNDLDIIKDIFKASAGKDDQKLVQKQLGYILGRLQIFXXXXXXXXXXXXXXXIVSNSHLNNSFLALARELDIMEPKVPEDIYKSHLDNKPFSSQSVSMDSARQNLASSFVNGFVNTAFGKDKLLTEDGNKWLYKNKEHGMLSTAASLGMLLLWDVDGGLTQIDKYLYSNEDYIKAGALLACGIVNSGVRNECDPALALLSDYIEHSNSIMQVGSILGLGLAYAGSNREDVLSLILPVMSDSKSTMEVVGVSALACGMIAIASSNGEVTSVILQTIMERSALELKDHFAKXXXXXXXXXXXXKQEEVDATIETLKVVQGPFSQWARVMVDVCAYAGTGNVLKVQNLLHICSEHY 2123
QL DEL MLV+RL E + SL++PALE LR QIRSST+SMTSVPKPLKFLR H+ LKE+++ ENK F ADI+SVL MT R+CLKYR +GS E L SWGHEYVRHLA E+ E+ E ++ + E L+ L EI+PY+M HNAE +ACDL MEIE++D+LEK +D++ + +VCLYL+SCV YVPEPE++ LL+CAL +F K+ +PEAL LA+ LND+++++DIF ++ KD +VQKQ+ ++LGR +FLEL E+ EE EDL EI+SN LN++FLALARELDIMEPKVP+DIYK+HL+N F +DSAR NLASSFVNGFVN AFG+DKLLT+DGNKWLYKNK+HGMLS AASLGM+LLWDVDGGLTQIDKYLYS+EDYIK+GALLACGIVNSGVRNECDPALALLSDY+ H+++ M++GSI GLGLAYAGSNREDVL+L+LPVM DSKS+MEV GV+ALACGMIA+ S NG+VTS ILQTIME+S ELKD +A++L LGLGL +LGK E ++A + L+VV PF +A +VDVCAYAG+GNVLKVQ LLHICSEH+
Sbjct: 51 QLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIF--TSCKD--VVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHF 620 HSP 2 Score: 386.726 bits (992), Expect = 2.539e-117 Identity = 196/261 (75.10%), Postives = 226/261 (86.59%), Query Frame = 3
Query: 2295 GSHQGVAVLGIAAIAMGEDIGSEMVLRTYNHLLQYGEPAIRRAVPLGLALLSASNPKLQVIDILSKFSHDHDSEVAHNAIFAMGIVGAGSNNARLAGMLRQLALYYHKDANNLFMVRIAQGLIHLGKGTLTVSPYQYDRTYMSPVAVGGLLATLTAFFDVKQTILGKSHYLLYSLVSAMQPRMLVTLDTELKPLPXXXXXXXXXXXXXXXXKPKSITGFQTHTTPVLLAHGERAELATEEFIAMTPVLEGFVVCKKNPEYD 3077
G+HQGVAVLGIA IAMGE+IG+EM LRT+ HLL+YGEP +RRAVPL LAL+S SNP+L ++D LSKFSHD D EV++N+IFAMG+VG+G+NNARLA MLRQLA Y+ KD NNLFMVR+AQGL HLGKGTLT+ PY DR MS VAV GLL L +F DV+ ILGKSHY+LY LV+AMQPRMLVT D EL+PLPV VRVGQAVDVVGQAGKPK+ITGFQTHTTPVLLAHGERAELATEEF+ +TP+LEGFV+ +KNP YD
Sbjct: 647 GAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNYD 907 The following BLAST results are available for this feature:
BLAST of TCONS_00053113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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