|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053262 ID=TCONS_00053262|Name=TCONS_00053262|organism=Clytia hemisphaerica|type=transcript|length=1812bp
atcaaaaatacggcgcatattttaaggcttcaatttttcttgcctgagaa
aggttagagattgacctctagcccttcgggcttgaaactcaatggtttta
agtggaaatgcaattccataatggtggactttggcaaatttctaacccaa
accattttgattctccaaGAGTATTTCAAGAATACTTTCAACGCCAAAAA
GTTTTGGGACACCATtggaaaccatttttgagattttagcctgagaaaac
caagttttagcttgaaatattggcatttagcatgaaaactcaatttctag
ggcaccattatggatttataggaaatttttgaaaactcaagtttgatttt
tcctggagctttctcttaAGTGTTTcattactgaaaatttcaagtgtgta
ccttaaaaagtttaaaagttgtgggtcctcaaaaatgctgctttcatgca
ttttgctacccagaatcggagaaaatcagcctttttatagcctgaaattg
aaacatttagCGATCtggctggggttattttgtctttttgtgttgaattc
tagtacaagacaccatttagaaaccatgttgaccctttcctggcctttta
tagtcttaaaatgggcaaaaaatgccatttttactcattttttgctttgg
tgcgaatcaaagacccccctggggaatgctggattttttacctaggaggt
taaaaattgcgcaaaatgtcttacaatagattaaattttcacaaaaaaat
actacactttgaattttttgacatcatgctaaaaatggtagttgacgatc
taccctaatAAGAGTTTTTATTTTGGATGAATTGTGATGCAGAATTTACG
GAATTTCCCTTTTTacctattttgaaaaataaggaaaGACGCTCATAACT
TCTTATCTACAAAAGTTACAGTAAcaaattgttgaaaaattggTGCAGTA
CTTATTTTATCAGTTTGAACAAGTTTGATACAGTCCTTATTTGAAAAGAA
CTCCCAAAGAACTTCTTGAAAAACGCCTTGAAAAAACCTCccaaaatcat
gattttttgccttaaaaaacTGTTGGTTTTCAATTTCATGGTTACAACAT
GCAAATTAAAAGCAGCACCATTAAAGTGACAAAAGTTAATTGAAGCTTTT
TGAAGTTTCATCAGCAGAAGACCAACGTGTATGGCCACACCAGGAATGTT
TCAAGGTTTAAAGCTTTTTACTcttcttttatttgaatttgCATCCCATC
CAGAGGCCATCAGACATTAAGCACCTGAGAGTCCCATCTTAAAGCATATA
TACTCGTCTTGGAACTGCTTGGAAGCCGCCTTTTAACAAGTGAATTCAAA
AGATAACTTTCTTCGAAACGATCGCTTGTCCTGGCTTGTCAATAGTCAAT
AGTCATATGGCCAAGCAAGGAGATGCAGTCCTTAAGTATATTGACAAACT
GTTTCCTACACTTCTATGACCTATATACTATTTGAGGAAGGTATGTAGCT
CCCGTTGAAAAACGGGGGAAATCTAATGTATCATGGGGAAACAATATCAC
AACATCTCTTTACAGCCTTTATCCCACCTTCTTTCGAAACTCTGCTGGTA
TGACAAAAACTATGAACAAAGTAAGAAAATCTAGATTGGAAAActttaat
gttttcatttctaaataaaaaatgaacACACAAAAAGCAAAGCCAAGCAA
GCAAATAAACCCAACAAAACAGTCTCCCAACTCCATCGTTGCTGGCTACG
ATTCATATGATTTCATTCATTCTTTACACAATTTTTAGTCGacaatgaaa
actgaaaaaaac Run BLAST on NCBI transcript from alignment at scaffold_227:269414..271225 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053262 ID=TCONS_00053262|Name=TCONS_00053262|organism=Clytia hemisphaerica|type=transcript|length=1812bp|location=Sequence derived from alignment at scaffold_227:269414..271225 (Clytia hemisphaerica)
gtttttttcagttttcattgtCGACTAAAAATTGTGTAAAGAATGAATGA
AATCATATGAATCGTAGCCAGCAACGATGGAGTTGGGAGACTGTTTTGTT
GGGTTTATTTGCTTGCTTGGCTTTGCTTTTTGTGTgttcattttttattt
agaaatgaaaacattaaagTTTTCCAATCTAGATTTTCTTACTTTGTTCA
TAGTTTTTGTCATACCAGCAGAGTTTCGAAAGAAGGTGGGATAAAGGCTG
TAAAGAGATGTTGTGATATTGTTTCCCCATGATACATTAGATTTCCCCCG
TTTTTCAACGGGAGCTACATACCTTCCTCAAATAGTATATAGGTCATAGA
AGTGTAGGAAACAGTTTGTCAATATACTTAAGGACTGCATCTCCTTGCTT
GGCCATATGACTATTGACTATTGACAAGCCAGGACAAGCGATCGTTTCGA
AGAAAGTTATCTTTTGAATTCACTTGTTAAAAGGCGGCTTCCAAGCAGTT
CCAAGACGAGTATATATGCTTTAAGATGGGACTCTCAGGTGCTTAATGTC
TGATGGCCTCTGGATGGGATGcaaattcaaataaaagaagAGTAAAAAGC
TTTAAACCTTGAAACATTCCTGGTGTGGCCATACACGTTGGTCTTCTGCT
GATGAAACTTCAAAAAGCTTCAATTAACTTTTGTCACTTTAATGGTGCTG
CTTTTAATTTGCATGTTGTAACCATGAAATTGAAAACCAACAgtttttta
aggcaaaaaatcatgattttggGAGGTTTTTTCAAGGCGTTTTTCAAGAA
GTTCTTTGGGAGTTCTTTTCAAATAAGGACTGTATCAAACTTGTTCAAAC
TGATAAAATAAGTACTGCAccaatttttcaacaatttgTTACTGTAACTT
TTGTAGATAAGAAGTTATGAGCGTCtttccttatttttcaaaataggtAA
AAAGGGAAATTCCGTAAATTCTGCATCACAATTCATCCAAAATAAAAACT
CTTattagggtagatcgtcaactaccatttttagcatgatgtcaaaaaat
tcaaagtgtagtatttttttgtgaaaatttaatctattgtaagacatttt
gcgcaatttttaacctcctaggtaaaaaatccagcattccccaggggggt
ctttgattcgcaccaaagcaaaaaatgagtaaaaatggcattttttgccc
attttaagactataaaaggccaggaaagggtcaacatggtttctaaatgg
tgtcttgtactagaattcaacacaaaaagacaaaataaccccagccaGAT
CGctaaatgtttcaatttcaggctataaaaaggctgattttctccgattc
tgggtagcaaaatgcatgaaagcagcatttttgaggacccacaactttta
aactttttaaggtacacacttgaaattttcagtaatgAAACACTtaagag
aaagctccaggaaaaatcaaacttgagttttcaaaaatttcctataaatc
cataatggtgccctagaaattgagttttcatgctaaatgccaatatttca
agctaaaacttggttttctcaggctaaaatctcaaaaatggtttccaATG
GTGTCCCAAAACTTTTTGGCGTTGAAAGTATTCTTGAAATACTCttggag
aatcaaaatggtttgggttagaaatttgccaaagtccaccattatggaat
tgcatttccacttaaaaccattgagtttcaagcccgaagggctagaggtc
aatctctaacctttctcaggcaagaaaaattgaagccttaaaatatgcgc
cgtatttttgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053262-exon-scaffold_227-1491911889:269414..271225 | TCONS_00053262-exon-scaffold_227-1491911889:269414..271225 | Clytia hemisphaerica | exon |
| TCONS_00053262-exon-scaffold_227-1510915933:269414..271225 | TCONS_00053262-exon-scaffold_227-1510915933:269414..271225 | Clytia hemisphaerica | exon |
| TCONS_00053262-exon-scaffold_227-1575043694:269414..271225 | TCONS_00053262-exon-scaffold_227-1575043694:269414..271225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:269414..271225 . |
Blast
The following BLAST results are available for this feature:
|
