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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053267 ID=TCONS_00053267|Name=TCONS_00053267|organism=Clytia hemisphaerica|type=transcript|length=3129bpRun BLAST on NCBI protein sequence of TCONS_00053267-protein >TCONS_00053267-protein ID=TCONS_00053267-protein|Name=TCONS_00053267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp MNRFLFSSASILRREVLIAQRGIVTCVNYNNTGGYNSTTKQISKNYNGHGRun BLAST on NCBI transcript from alignment at scaffold_228:9203..17945+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053267 ID=TCONS_00053267|Name=TCONS_00053267|organism=Clytia hemisphaerica|type=transcript|length=8743bp|location=Sequence derived from alignment at scaffold_228:9203..17945+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_228:9203..17945+ >TCONS_00053267 ID=TCONS_00053267|Name=TCONS_00053267|organism=Clytia hemisphaerica|type=CDS|length=28686bp|location=Sequence derived from alignment at scaffold_228:9203..17945+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053267 vs. Swiss-Prot (Human)
Match: ABCB7 (ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7 PE=1 SV=2) HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0 Identity = 356/612 (58.17%), Postives = 473/612 (77.29%), Query Frame = 3
Query: 270 HSGVTVDSDKMD--KELDTVKVLNTLGSQVWPAGKPAIKARVVTALSLLIGSKLLNVQVPFLFKYAVDYLN---SNPVAIGDVETAMVSTATILILGYGAARAGASLCNEMRNAVFARVAQNSVREMAQQTFXXXXXXXXXXXXXRKTGMLSKAVDRGTRGISFFLNAMVFNIVPTIFEVSLVSGILAYNCGLPFTITALTCLAAYSTFTLSITQWRTKFRVQMNRADNEAGSTAIDSLINYETVKYFNNEKYEAERYGKLLHQYQEASLKTTTSLAFLNFGQNFIFSSALTVMMLLASQSIMQGTMTVGDLVMVNGLLFQLSIPLNFLGSVYRDLRQSLIDMQSMFQLMDEKSKIKEIPDAPPLMLTSDKQQDIVFENVAFQYEGGAPIFNDLSMTIQAGKKTAIVGGSGSGKSTIVRMLYRFMEPNSGTIRIGDQVISDVTLSSLRKNISIIPQDQVLFHDTIFYNINYGDLNASAEDVFAAARTADVHDSIMRMPDGYDTRVGERGLKLSGGEKQRVAIARAILKDSSIILYDEATSSLDSITEMNILKSLREITKNKTSLFIAHRLSTVVDADEIIVLGNGGVAERGTHQQLLQNPDSYYGYLWEKQN 2090
H+G + +D + K++DT K++ + S VWP +P ++ARV +L L G+K +N+ VPF+FKYAVD LN N + + D + + AT +++GYG +RAGA+ NE+RNAVF +VAQNS+R +A+ FLHLH+LDL +HLSR+TG LSKA+DRGTRGISF L+A+VFN++P +FEV LVSG+L Y CG F + L L Y+ FT+++T+WRT+FR++MN+ADN+AG+ AIDSL+NYETVKYFNNE+YEA+RY L Y+ ASLK+T++LA LNFGQ+ IFS LT +M+LASQ I+ GT+TVGDLVMVNGLLFQLS+PLNFLG+VYR+ RQ+LIDM ++F L+ ++IK+ A PL +T + + F+NV F+Y G + + +S + AGKK AIVGGSGSGKSTIVR+L+RF EP G+I + Q I DV+L SLR+ + ++PQD VLFH+TI+YN+ YG+++AS E+V+A A+ A +HD+I+RMP GYDT+VGERGLKLSGGEKQRVAIARAILKD +ILYDEATSSLDSITE IL +++++ K++TS+FIAHRLSTVVDADEIIVL G VAERGTH LL NP S Y +W Q+
Sbjct: 99 HAGGGLHTDPKEGLKDVDTRKIIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSDAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLGFHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPIMFEVMLVSGVLYYKCGAQFALVTLGTLGTYTAFTVAVTRWRTRFRIEMNKADNDAGNAAIDSLLNYETVKYFNNERYEAQRYDGFLKTYETASLKSTSTLAMLNFGQSAIFSVGLTAIMVLASQGIVAGTLTVGDLVMVNGLLFQLSLPLNFLGTVYRETRQALIDMNTLFTLLKVDTQIKDKVMASPLQITP-QTATVAFDNVHFEYIEGQKVLSGISFEVPAGKKVAIVGGSGSGKSTIVRLLFRFYEPQKGSIYLAGQNIQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYGNISASPEEVYAVAKLAGLHDAILRMPHGYDTQVGERGLKLSGGEKQRVAIARAILKDPPVILYDEATSSLDSITEETILGAMKDVVKHRTSIFIAHRLSTVVDADEIIVLDQGKVAERGTHHGLLANPHSIYSEMWHTQS 709 The following BLAST results are available for this feature:
BLAST of TCONS_00053267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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