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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053269 ID=TCONS_00053269|Name=TCONS_00053269|organism=Clytia hemisphaerica|type=transcript|length=2927bpRun BLAST on NCBI protein sequence of TCONS_00053269-protein >TCONS_00053269-protein ID=TCONS_00053269-protein|Name=TCONS_00053269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp MRLQWKMKARAKYYLVIILCMVVLYLIHHNSYYTTPDAFKYDHKETKSSARun BLAST on NCBI transcript from alignment at scaffold_228:18313..26029+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053269 ID=TCONS_00053269|Name=TCONS_00053269|organism=Clytia hemisphaerica|type=transcript|length=7717bp|location=Sequence derived from alignment at scaffold_228:18313..26029+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_228:18313..26029+ >TCONS_00053269 ID=TCONS_00053269|Name=TCONS_00053269|organism=Clytia hemisphaerica|type=CDS|length=16038bp|location=Sequence derived from alignment at scaffold_228:18313..26029+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053269 vs. Swiss-Prot (Human)
Match: GLT11 (Polypeptide N-acetylgalactosaminyltransferase 11 OS=Homo sapiens GN=GALNT11 PE=1 SV=2) HSP 1 Score: 417.927 bits (1073), Expect = 3.393e-133 Identity = 223/499 (44.69%), Postives = 310/499 (62.12%), Query Frame = 1
Query: 637 SFNLLVSDRIGYYRSIPDTRNKLCKHQ-WKTQGSHCSIIITFHNEAISTLLRTVGSILQRTPRDLVKEILLVDDFSTETNIE-KIHSFIQSTKTTTVKLVQAHKRQGLIRGRLLGARAAVGDILVFLDSHCEVNSHWLEPLIERIRENRKNVVCPVIDLIDSHTFVYLASPIVRGGFTWSLAFGWEQIPETQKGNPK--KDPFKSPTMAGGLFAMDRKYFFELGAYDDMMEVWGGENLEISFRIWMCGGRLEIVPCSRVGHVFRSQRIGNAQTDLSHDGENAVRVAEVWLDGYKKHFYASRPSLRTYK-PDVSKRVKLRRDLDCKSFDWFLREIYPEMSIPGVREGQAWNVLGDSKKNADNITSVVSIVNPNSFLCMAVKGANEPRSKSR-IVLGKCHLSKYKD-WYYTDEEEVRLKHGKNRLCLDVELFYNAGNSQVRLMKCHGEKAGQQWKYHKEDERLYNPAYGMCLS--QDVEQYFFVTMAICDVSDEKQHWKLK 2106
+FN+L+SDR+GY+R +PDTRN CK + + S++I F+NEA S LLRTV S++ RTP L+ EI+LVDD S +++ ++ ++Q +K+++ KR+GLIRGR++GA A G++LVFLDSHCEVN WL+PL+ IRE+R VVCPVID+I + T Y +SP+VRGGF W L F W+ +P ++ G + P KSPTMAGGLFAM+R+YF ELG YD M++WGGENLEISFRIWMCGG+L I+PCSRVGH+FR +R + N++R+A VWLD YK+ +++ RP L+T ++S+RV+LR+ L CKSF W+L +YPEM I G + + + + + + C+ +G P K +VL C S W Y +E E+ L + LCLD+ + RLMKCHG QQW + K + RLY + G CL + Q V MAICD S +Q W L+
Sbjct: 118 AFNMLISDRLGYHRDVPDTRNAACKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDFDDLKGELDEYVQKYLPGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLLAAIREDRHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVPLSELGRAEGATAPIKSPTMAGGLFAMNRQYFHELGQYDSGMDIWGGENLEISFRIWMCGGKLFIIPCSRVGHIFRKRRPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPDLKTKSYGNISERVELRKKLGCKSFKWYLDNVYPEMQISGSHAKPQQPIFVNRGPKRPKVLQRGRLYHLQTNKCLVAQG--RPSQKGGLVVLKACDYSDPNQIWIYNEEHELVL---NSLLCLDMS--ETRSSDPPRLMKCHGSGGSQQWTFGK-NNRLYQVSVGQCLRAVDPLGQKGSVAMAICDGSSSQQ-WHLE 607 The following BLAST results are available for this feature:
BLAST of TCONS_00053269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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