TCONS_00053270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053270
Unique NameTCONS_00053270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053270 ID=TCONS_00053270|Name=TCONS_00053270|organism=Clytia hemisphaerica|type=transcript|length=1712bp
TTGACCCAGAACGAAAAATGgtCACCAACAATGGCTGGAGGATTGTTTGC
AATGGATCGCAAATACTTCTTTGAACTTGGTGCTTATGATGATATGATGG
AGGTTTGGGGAGGAGagaatttggaaatttctttCAGAATCTGGATGTGT
GGAGGAAGACTGGAAATAGTTCCTTGCTCACGTGTTGGTCACGTGTTTCG
AAGCCAACGAATCGGTAATGCGCAAACTGATCTTTCACACGATGGAGAAA
ATGCAGTACGCGTTGCTGAAGTTTGGTTGGATGGATACAAAAAACATTTC
TACGCATCACGTCCTTCATTGCGCACGTATAAACCAGACGTTAGCAAACG
CGTGAAATTACGTAGGGATTTGGACTGTAAATCGTTCGACTGGTTTCTAC
GTGAAATTTACCCTGAGATGTCAATCCCTGGTGTGAGAGAAGGCCAAGCT
TGGAATGTTTTGGGCGACTCTAAGAAAAACGCTGACAATATCACTTCGGT
TGTATCGATTGTAAATCCAAACAGTTTTCTATGTATGGCGGTCAAAGGGG
CCAACGAGCCAAGATCGAAGTCAAGAATTGTTCTTGGGAAGTGTCACCTA
TCCAAATACAAGGACTGGTATTACACAGATGAGGAAGAAGTTCGTTTGAA
GCATGGAAAGAATAGATTGTGTTTGGATGTTGAACTGTTCTACAATGCTG
GTAACAGTCAAGTACGCCTCATGAAGTGTCATGGAGAAAAAGCTGGCCAA
CAATGGAAATATCATAAAGAAGATGAACGCTTATACAATCCAGCTTATGG
TATGTGTTTAAGTCAAGATGTCGAACAATATTTTTTCGTAACCATGGCGA
TTTGTGACGTCAGTGATGAAAAACAacattggaaattgaaaaaagacGAA
ACAAAGCGAGTAAAATAatttgggcttttccagaaaaaacttgAATATAG
GGTATctaggatataacattttttggatatttacccccggacagcaggtc
taacccccggacagcatcagttgacccccctggacattcaaaattactct
caaacagagcaaattaccccaaacagagcaaattACCcacaaacagagca
agtttgcccccaggacaaggcaaattttgttagaattttcactacccccg
gacactatatcctccaccccacatgtacaaacattttttggaagagCCCT
CTGCCTAGTTTGCTCATATTTATATCTTTTACAGAAACTGAATTGTAATA
CTCCCAACCTATTTCAAATCTGAATAATTTCTCGCATATATCTTACCTTC
TGAAATTTCTTAGATTTATATCTCAATTTTTGCAGACCTTTTTCGTTTTA
GAGACTGCAACCTCTATAGTCAAATAGTAATAGAATCTCGTGATTATCTT
TCCAATGTTATATCCTTATAACTTAGAGTGTTGAGAAAAATCTTTCACCC
TTActttgaattttatattttgtaattatttataaattttttattttatt
tttaggtaTTAAATTTTCAGGAAAACCATGAGCTTAAATCTAGGTGTTGG
ctatattttatttatgttgATTATATTGTAACAGTCAAAGTTATCCCAAA
GCTCTCCCAATAGTTTATTTATTGACAGAGTAGAAGTAAAAAGGCTTAGC
AGCCTAAGAGCAAAACATTCGTTACTGAATTTTTATCGATTTCTTAGGGA
TATTTAACTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_228:20504..26029+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053270 ID=TCONS_00053270|Name=TCONS_00053270|organism=Clytia hemisphaerica|type=transcript|length=5526bp|location=Sequence derived from alignment at scaffold_228:20504..26029+ (Clytia hemisphaerica)
TTGACCCAGAACGAAAAATGGTAAGAAAGTGATGTTGAATGAAAATAATT
AGGAAGTAAGTATACTAATCTGGTGGCTGACAGTGGAGCCGGGATATAGG
GAGTCtgccttttctatttgcgctagactgGAGGTTGAATGTTGAGGTGg
ggcgccacacctactctcactTCCCCGTAGCTTACCGCCCATCATCAGAT
TACCTAACCTAAGCTACTCATTTGCTGAGTGGGTGGTGACCAGCGATCGA
ACCCACAAGCCTTGGTTTGCAAAGCGAATGCTCTACCGTTTGAGCTACCC
GGCTGAAAAATATAAGCTCTAGAATTAGCAGAAGAATCACTCACATCTGA
CCAAATATGaaccaaaaatttcatttttttctcatttttaggtCACCAAC
AATGGCTGGAGGATTGTTTGCAATGGATCGCAAATACTTCTTTGAACTTG
GTGCTTATGATGATATGATGGAGGTTTGGGGAGGAGagaatttggaaatt
tctttCAGAGTATGTTACGATAGTCGCAATAAAGTCTGCCTCGATATAAt
ctgctcgttgaaaagatgatAAAGAGTTGGGtattattgaaaaatatcaa
aaaacattggaaagtaaaatgaaaaaatgaaaaatgaagaattgtAGAAT
TGTAAAATGACCGTCATTTTCATATTAGtgaatcttcaattttagagggt
tattactttgaaaaaaattaggaTATATTGAAACAAACATATAATTGTTA
TAGAAAACTGACAGCAGGTGACAACAAATCCTAACCAATATACCTCGTAA
AACTGGTTTTTGTTTcgatatattcaattttaaccGAAAAACGTGCGAAC
TTTGATTGAAATGTCATTTGGAGAATCTCATTTGGTTACAAGAAATCTAT
TAAGTGCTCAGTTTGTAATTCTTTAAATATGATTTATCCtttaaaaattt
caaccttAGATCTGGATGTGTGGAGGAAGACTGGAAATAGTTCCTTGCTC
ACGTGTTGGTCACGTGTTTCGAAGCCAACGAATCGGTAATGCGCAAACTG
ATCTTTCACACGATGGAGAAAATGCAGTACGCGTTGCTGAAGTTTGGTTG
GATGGATACAAAAAACATTTCTACGCATCACGTCCTTCATTGCGCACGTA
TAAACCAGACGTTAGCAAACGCGTGAAATTACGTAGGGATTTGGACTGTA
AATCGTTCGACTGGTTTCTACGTGAAATTTACCCTGAGATGTCAATCCCT
GGTGTGAGAGAAGGCCAAGCTTGGAATGTTTTGGGCGACTCTAAGAAAAA
CGCTGACAATATCACTTCGGTTGTATCGGTATGTTTAATCATCGCATGTT
CAATCATTACCCCAGCTCAATTGTTAAATTCTGTCCTAGGAAATTTATCT
CTTTAAAGTCAAACAGTTTCTTACTGGGGAGAGGTGTAGTCTAATTTGTC
TTGTCCAGTGGTATCGAACATCCACCGGGAAATTTAATTTAAagggtaat
tttttttgcttccaaaggaatcaattttttacatttggcttataaatcaa
aacttctcgtaaaaaagattgaaaaaaatactttaatttcagaaatttgT
ATTTGGTGGGATTTTAATTTTGCGTATTATGAGAATAGAATTTACTTATA
AGTACTTATGGtttttttttcgcgggaatttaattttgcagctcagcaat
atagattttttttcaaccattttatctagcaaattttagcaaatTCATAA
AAATCACGGGAAAATCTTGGCCGCGAAAATTTCTGACATCAAAGTATAAT
GATATGCACCAACCAGCctccgaaatttttttttatgatgacAGACGAGG
CTCCTTATGATTTTTAGATTGTAAATCCAAACAGTTTTCTATGTATGGCG
GTCAAAGGGGCCAACGAGCCAAGATCGAAGTCAAGAATTGTTCTTGGGAA
GTGTCACCTATCCAAATACAAGGTAACGAGTCTGCATACACTTTTAATAC
GTCAAATACTTTTCGCATCAAGACGTCTTTTTTTAAGCTGGCGAATCTCA
CAAGGAAAATGGAGgaaaaaaatcgatgaaaatgaccaagaaTTGCCGCT
TAAAAATCAGGTTTGCACCCCAGAAAAATGCTTTATTAGAGAAGGAACAA
CACCAAAAGACACTCTGAACTGTAGGAAGTGCCACCGAGATGTTCATTAT
GATTGTTCCGAGCTACCAATCTACCAAATACAGATTTGCTTAACGTTTAA
ATCTCGAAGTTTTCAATGCCAAAGTTGCGTTAAGATCTCGCCAGAGCTGA
CTGAACTAGTTGAAACATGCAGAAACACCAAAATCGAAGGACttcaaaag
gaaattaaagcatgtgaaaacaaaatgaagagatttcccaactgaaatca
aatgatgaactttcttacaaaaggaatcaaAGAAAGCCTGGAAATAAAGA
TGAGCATACTCGAGAAAAAGATAGAAACAAAGATCGAGAACATCTTAATC
GAAGAGGCGAAAGAGGTTAGTTATCCTGAAGCTGTATCCAAACAGatgaa
tcaaaaatcaaataaggtGGAGAAAATAACTCGATGTGAAACAGCCGGCA
ATCAGCGATCCACAGCATGTAACCTAATTTTCCATGGAATCAGAGAACAT
CTGGAGGATCCCGAGAATACAACGAAAATCTACGAAGAGAAATTTATCAA
GTACAGAATCCTTGGTTTACAACTGGGCATCAAGGacataaaaattataa
acacaCAGAGGATTGGAGTATTCACAGAAGAAAGAGAGGAGAAAGGGAAT
TATCGACCAATCAAGGTAGTATTCGAgaatgaagaagacaagaacaAAGT
CTTGAGAGCCATCACGACATACAAAGGCCCTCCTTCATCCTATCGAGCAA
CAGAAGACCTCACAATTATTGAACGATTGACAATCAAAGAATTGTGCAAG
TGAGCACATGAGCTCaatgctcaaatgaaagacaaaaacattcaatttaa
AGTCAGGGGAAGCCTCAGAACAAAACTTTACctaaagaaaattgtaacaa
CAAGTGATTGTCTTAGAGGCCCACGGCGTGCCTTGAACCTCAATCcttta
acaaataaataataaCCTGTATAAAACCTCCATGTAAAACCATTTGTAGC
GGGAGGGGCGTACGGGGTTGTTTGACTGATATCCGGAAAACCGAAGAATT
TTACCACGATTTCTGAAATTCTGCAAAAACTACCCTTTTTCGTCATACTG
TCTAAATTTCACAAAAAGAGAAGAAATTCCGAATTACTTGAGCAAAAACT
CTTCATTTCCGAAATTCCAGAGTAAAAAAGGATCGATTTTCGATACtgaa
caatttcagaattccgaaataccgaaaaaGAATCGTGCTATTTCCAAAAT
TCCGAAGTAAAAAAGGTTGCTTTTCGATTTCCTTAGGACTGGTATTACAC
AGATGAGGAAGAAGTTCGTTTGAAGCATGGAAAGAATAGATTGTGTTTGG
ATGTTGAACTGTTCTACAATGCTGGTAACAGTCAAGTACGCCTCATGAAG
TGTCATGGAGAAAAAGCTGGCCAACAATGGAAATATCATAAAGTAGGAAA
ATGTCTAGTTTCCTAGTTATTTCCGGGGTGGGGGGGGCAGTACTAAAGTT
TGAGACATCATGATGTTTTGTTACATAGTAGTCTTATTTTGGAGTTAAAT
CaacatttttaggaaaattggtCCCGAAAAGACAAAAATAGGGTGGTTAA
TCCCCATATATGTCTTAGAAAATGTTCATAAGTAAATCAGATTTCTTGAA
TGATTTAGTCATCACTCCATTTTCCTTGTTACTTTGTCGAAACCTTCAAT
ATTTAATCTTGAAGAGATGAATTAATGGTGCTTTTTTGCACACGTCTATG
AAATAATCACTCCCACCACTATGATGGTTGCCATGGGAAgaatttcatgc
atttttccaaggttttcagataatttatttattcatattggaagtttatc
gtggctaaCGTTTGGCTATGTTTCGttagattcttctcccatcatcgggc
aatgtggaggatgtttCTCCCACTATTTGTACTAAGACCTTCTGACTACC
AATCATTGTAATTTCCTTACAAGGTGTAAATTCCCATGATATAACATATG
TGTAAGGTAAATTATCTCTTGAATTTATGAGATTACTCATTATTCCATTT
CGCCTCTCTGTCTGGATGTTAGGAACTCAAATATTGGGTAGAATGTATGA
AACTTATTTAAATTTACTTATTCATGACATGAAAAGCCGTTCGaagtttt
accgaaattttaatgaaatttttcctGCAAGTATTTGTTGCCAAAAATGA
TTTTCTAATTTGCAATAAAATAAATAGTTTTGTCTTGTCTTTTGGATTTT
TCCCATCGCAAAAGCTCAaaaatttactgaaaaaaaaggatttcaaaaat
aatttaccgTTAAGGCAGGGCTGCACTTCTTCAAGGTTTTCAGTGCACTA
ATAAACTTCTTTAATATCTAAAAGCCGTCGTTACCTTTATAGGAAGATGA
ACGCTTATACAATCCAGCTTATGGTATGTGTTTAAGTCAAGATGTCGAAC
AATATTTTTTCGTAACCATGGCGATTTGTGACGTCAGTGATGAAAAACAa
cattggaaattgaaaaaagacGAAACAAAGCGAGTAAAATAatttgggct
tttccagaaaaaacttgAATATAGGGTATctaggatataacattttttgg
atatttacccccggacagcaggtctaacccccggacagcaggtctaaccc
ccggacagcaggtctaacccccggacagcatcagttgacccccctggaca
ttcaaaattactctcaaacagagcaaattaccccaaacagagcaaattAC
Ccacaaacagagcaagtttgcccccaggacaaggcaaattttgttagaat
tttcactacccccggacactatatcctccaccccacatgtacaaacattt
tttggaagagCCCTCTGCCTAGTTTGCTCATATTTATATCTTTTACAGAA
ACTGAATTGTAATACTCCCAACCTATTTCAAATCTGAATAATTTCTCGCA
TATATCTTACCTTCTGAAATTTCTTAGATTTATATCTCAATTTTTGCAGA
CCTTTTTCGTTTTAGAGACTGCAACCTCTATAGTCAAATAGTAATAGAAT
CTCGTGATTATCTTTCCAATGTTATATCCTTATAACTTAGAGTGTTGAGA
AAAATCTTTCACCCTTActttgaattttatattttgtaattatttataaa
ttttttattttatttttaggtaTTAAATTTTCAGGAAAACCATGAGCTTA
AATCTAGGTGTTGGctatattttatttatgttgATTATATTGTAACAGTC
AAAGTTATCCCAAAGCTCTCCCAATAGTTTATTTATTGACAGAGTAGAAG
TAAAAAGGCTTAGCAGCCTAAGAGCAAAACATTCGTTACTGAATTTTTAT
CGATTTCTTAGGGATATTTAACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033630XLOC_033630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053270-exon-scaffold_228-1491911889:20504..20523TCONS_00053270-exon-scaffold_228-1491911889:20504..20523Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:20504..20523TCONS_00053270-exon-scaffold_228-1510915933:20504..20523Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:20504..20523TCONS_00053270-exon-scaffold_228-1575043694:20504..20523Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1491911889:20895..21012TCONS_00053270-exon-scaffold_228-1491911889:20895..21012Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:20895..21012TCONS_00053270-exon-scaffold_228-1510915933:20895..21012Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:20895..21012TCONS_00053270-exon-scaffold_228-1575043694:20895..21012Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1491911889:21463..21831TCONS_00053270-exon-scaffold_228-1491911889:21463..21831Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:21463..21831TCONS_00053270-exon-scaffold_228-1510915933:21463..21831Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:21463..21831TCONS_00053270-exon-scaffold_228-1575043694:21463..21831Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1491911889:22371..22475TCONS_00053270-exon-scaffold_228-1491911889:22371..22475Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:22371..22475TCONS_00053270-exon-scaffold_228-1510915933:22371..22475Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:22371..22475TCONS_00053270-exon-scaffold_228-1575043694:22371..22475Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1491911889:23940..24095TCONS_00053270-exon-scaffold_228-1491911889:23940..24095Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:23940..24095TCONS_00053270-exon-scaffold_228-1510915933:23940..24095Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:23940..24095TCONS_00053270-exon-scaffold_228-1575043694:23940..24095Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1491911889:25046..25274TCONS_00053270-exon-scaffold_228-1491911889:25046..25274Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:25046..25274TCONS_00053270-exon-scaffold_228-1510915933:25046..25274Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:25046..25274TCONS_00053270-exon-scaffold_228-1575043694:25046..25274Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1491911889:25315..26029TCONS_00053270-exon-scaffold_228-1491911889:25315..26029Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1510915933:25315..26029TCONS_00053270-exon-scaffold_228-1510915933:25315..26029Clytia hemisphaericaexon
TCONS_00053270-exon-scaffold_228-1575043694:25315..26029TCONS_00053270-exon-scaffold_228-1575043694:25315..26029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:20504..26029 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.55839	6.3342	1.73286	3.0889	31.3983	22.4685	33.3573	31.9945	14.1943	12.8175	11.1331	9.68014	6.62483	5.10738	5.74915	6.56905	9.43958	8.28763	4.25038	7.29423	7.50965	7.16974	11.8649	11.0644	12.7358	12.912	10.1435	8.09333	11.4732	11.4481
Blast
[Close]
BLAST of TCONS_00053270 vs. Swiss-Prot (Human)
Match: GLT11 (Polypeptide N-acetylgalactosaminyltransferase 11 OS=Homo sapiens GN=GALNT11 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 7.243e-63
Identity = 125/295 (42.37%), Postives = 169/295 (57.29%), Query Frame = 1 
Query:   22 SPTMAGGLFAMDRKYFFELGAYDDMMEVWGGENLEISFRIWMCGGRLEIVPCSRVGHVFRSQRIGNAQTDLSHDGENAVRVAEVWLDGYKKHFYASRPSLRTYK-PDVSKRVKLRRDLDCKSFDWFLREIYPEMSIPGVREGQAWNVLGDSKKNADNITSVVSIVNPNSFLCMAVKGANEPRSK-SRIVLGKCHLSKYKD-WYYTDEEEVRLKHGKNRLCLDVELFYNAGNSQVRLMKCHGEKAGQQWKYHKEDERLYNPAYGMCLS--QDVEQYFFVTMAICDVSDEKQHWKLK 891
            SPTMAGGLFAM+R+YF ELG YD  M++WGGENLEISFRIWMCGG+L I+PCSRVGH+FR +R   +         N++R+A VWLD YK+ +++ RP L+T    ++S+RV+LR+ L CKSF W+L  +YPEM I G        +  +       +     + +  +  C+  +G   P  K   +VL  C  S     W Y +E E+ L    + LCLD+       +   RLMKCHG    QQW + K + RLY  + G CL     + Q   V MAICD S  +Q W L+
Sbjct:  322 SPTMAGGLFAMNRQYFHELGQYDSGMDIWGGENLEISFRIWMCGGKLFIIPCSRVGHIFRKRRPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPDLKTKSYGNISERVELRKKLGCKSFKWYLDNVYPEMQISGSHAKPQQPIFVNRGPKRPKVLQRGRLYHLQTNKCLVAQG--RPSQKGGLVVLKACDYSDPNQIWIYNEEHELVL---NSLLCLDMS--ETRSSDPPRLMKCHGSGGSQQWTFGK-NNRLYQVSVGQCLRAVDPLGQKGSVAMAICDGSSSQQ-WHLE 607
The following BLAST results are available for this feature:
BLAST of TCONS_00053270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLT117.243e-6342.37Polypeptide N-acetylgalactosaminyltransferase 11 O... [more]
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