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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053275 ID=TCONS_00053275|Name=TCONS_00053275|organism=Clytia hemisphaerica|type=transcript|length=1714bp
ATATTTCCTCTTATCTCACATTCAGCACATAGTTGCATAAACAACTCaac
caaacaaaaacaaactacACTAAACTTACGAACAATGGATGTTTAATTCT
AAAAAATCTTTTATACAACAATCAAAAGATTTGTGCTAAAGAGAAAAACA
ATTTGCAATATTTTGTATGTTATAAAATCATCAACATGCTGCTGTTTGTT
TTCCTTTTGTCTTTCAGTGTACAGAAACATTTGGTCAAAGCCAGTGAGGA
TGCTACCAACGATGAGATTCTTCATGATGATCGACCGATCATCGGCATCT
TATCGCAAAAAATCACGGAAGAGTTCACACCGTACGTAACCCACGATTCC
ACTTATATTGCTGCTTCTTATGTGAAATGGATCGAAGGCGCCGGTGCACA
AGTTATACCCATTCTCTCTACTTACtctaaaaagaaagttttgaaattgG
TTCGATCAATCAACGGTGTCCTGTTCCCTGGAGGAGCTGCACCATTAAAT
GATTCGAATTACGCCAGAGCTGCAAGATGGATTTTCAATGAAGCCATACG
TATTAATGATTTTGAAAAGCGACCTTTCCCTCTCTGGGGTACGTGTCTTG
GATTTGAAGTATTGAATGTTTTAGGAAGTGGGTTAAGCCCTAATGAAATA
TTATCTGAATACGATTCTGAGAATTTACTTTTGGAAATTGATTTTACCAA
AGAAGCGTTTGACAGTCGTTTGTTTCACACGATTGATATGGGATTGATGA
GGAAAATGATGTTCAAGAAATTGTCCCTTCACATGCACCAGGCTGGCATT
AACCCTGATGTCTATGAGAAGAATTCACGGATTCGAAAAATGTTTAAAGT
GTTAGCATCCAATTTGGATAAAAAGGGGAAAGAATTTGTGTCTGTGATTG
AAGGTAGAAAGTATCCTTTTTACGGCACTCAATTCCACCCCGAAAAGAAC
ATATATGAATGGACGAGAAACGAGAAAATCAACCATTCCCCAGATGCTAT
ACTAGCTGCTCAATATTTCGCTAATTTCTTTGTCAATGAAGCTCGTAAAA
GTTACATCGAAAATATGCCAGTGCGACGGTTGAAACACCTTGAAGATCAT
TTGATGTTTCGATATTCTCCAGTATATTCAGGAGGTTCAAGTCTTTTCGA
GCAAGTTTACACATTTAAAAATCAAACCATCAATAACAGAATCAAAGCTA
AAGGGAAtgctttataattttttatgcATCTTAGACTATTTATGATAAAC
ATTCATAAGATTTATGGTACTGTATTTTAACTTTTATGGTACTGTAGTTT
AACTTTTCAAcggacattttttgtttatattgggTGATCCTGGTCAATAT
TTTTTCTGTAAgcatgcttttttataagaatggtgtttttctattttcat
cattgatattctcaactttttggtcatcctgaaatattcttagggtattc
ttacgttAGGACTCATACCCAACCAATATACCTAACGCGAAactttggca
tttttgtgaaacttTCTAGCTATGATGGGAAAAAATTGGCAATTTGCAGG
TATAATGCTCTAAAAATTCTTAGTTCCAGTTGTCAAATCCCATGATGATG
GTATTTtcagcatattcttaattttttttgccaatttcatcatggaaTTT
CTTTATTCGTTAGATAACCTTAAATGTATTAATTTTAACGTGTACTTGTG
GAGGAGAATTCTAG Run BLAST on NCBI transcript from alignment at scaffold_228:185898..188378+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053275 ID=TCONS_00053275|Name=TCONS_00053275|organism=Clytia hemisphaerica|type=transcript|length=2481bp|location=Sequence derived from alignment at scaffold_228:185898..188378+ (Clytia hemisphaerica)
ATATTTCCTCTTATCTCACATTCAGCACATAGTTGCATAAACAACTCaac
caaacaaaaacaaactacACTAAACTTACGAACAATGGATGTTTAATTCT
AAAAAATCTTTTATACAACAATCAAAAGATTTGTGCTAAAGAGAAAAACA
ATTTGCAATATTTTGTATGTTATAAAATCATCAACATGCTGCTGTTTGTT
TTCCTTTTGTCTTTCAGTGTACAGAAACATTTGGTCAAAGCCAGTGAGGA
TGCTACCAACGATGAGATTCTTCATGATGATCGACCGATCATCGGCATCT
TATCGCAAAAAATCACGGAAGAGTTCACACCGTACGTAACCCACGATTCC
ACTTATATTGCTGCTTCTTATGTGAAATGGATCGAAGGCGCCGGTGCACA
AGTTATACCCATTCTCTCTACTTACtctaaaaagaaagttttgaaattgG
TTCGATCAATCAACGGTGTCCTGTTCCCTGGAGGAGCTGCACCATTAAAT
GATTCGAATTACGCCAGAGCTGCAAGATGGATTTTCAATGAAGCCATACG
TATTAATGATTTTGAAAAGCGACCTTTCCCTCTCTGGGGTACGTGTCTTG
GATTTGAAGTATTGAATGTTTTAGGAAGTGGGTTAAGCCCTAATGAAATA
TTATCTGAATACGATTCTGAGAATTTACTTTTGGAAATTGATTTTACCAA
AGAAGCGTTTGACAGTCGTTTGTTTCACACGATTGATATGGGATTGATGA
GGAAAATGATGTTCAAGAAATTGTCCCTTCACATGCACCAGGCTGGCATT
AACCCTGATGTCTATGAGAAGAATTCACGGATTCGAAAAATGTTTAAAGT
GTTAGCATCCAATTTGGATAAAAAGGGGAAAGAATTTGTGTCTGTGATTG
AAGGTACTATTCTTTTTCTACGTTATACCTTTCTTTTaactatcaaaaca
aagaaaatcaagtaCACGTTTtattataagagcatccaaaatttttgaag
ccttagaatgttcttaacattttagccatcgaagccttatattcctatat
atagtttgttcttataaaaaaacgtgtacttgtaaaaaaagttttgagtt
gCATTAAGATTTGGTTTAAGCTATCgcaggaaaaaaaattgactattgca
aaaaatattgttgctattgttttcgaaaacccgcaaagcttctgattggt
caaccgctgaaattttattgtaatgtcacgtgacctaggaaagatttcct
acctaaccacggcacacttttcagccaaagcacgacatgtAGCCCCtctc
gggctttataaatctataattttaacctctacaaaccggtgtgatagggt
tttttcttcttcattttttgggaTTCCGGGACTCAGTGAAAATTATGAca
ggaaaacggtatttcgtaCCCCTCCAAACCCCCctttaaggaatcttttt
tttacttcataGAGAGTCCACCTCTATTGATTTCAAGCTAAAAAACAACT
GGAATTTCGGATTTTTATAAACAGGATGTTTGTATATTACCGTGGAATCC
GACCTCATCACAAACAAACCATTCCCTTCAGATATAGAAAATTGACCCCC
TCAACTTtaaatgttatggttttttgtttggagaagcttataatatattt
aaaatttgATCTCTTTTCAGGTAGAAAGTATCCTTTTTACGGCACTCAAT
TCCACCCCGAAAAGAACATATATGAATGGACGAGAAACGAGAAAATCAAC
CATTCCCCAGATGCTATACTAGCTGCTCAATATTTCGCTAATTTCTTTGT
CAATGAAGCTCGTAAAAGTTACATCGAAAATATGCCAGTGCGACGGTTGA
AACACCTTGAAGATCATTTGATGTTTCGATATTCTCCAGTATATTCAGGA
GGTTCAAGTCTTTTCGAGCAAGTTTACACATTTAAAAATCAAACCATCAA
TAACAGAATCAAAGCTAAAGGGAAtgctttataattttttatgcATCTTA
GACTATTTATGATAAACATTCATAAGATTTATGGTACTGTATTTTAACTT
TTATGGTACTGTAGTTTAACTTTTCAAcggacattttttgtttatattgg
gTGATCCTGGTCAATATTTTTTCTGTAAgcatgcttttttataagaatgg
tgtttttctattttcatcattgatattctcaactttttggtcatcctgaa
atattcttagggtattcttacgttAGGACTCATACCCAACCAATATACCT
AACGCGAAactttggcatttttgtgaaacttTCTAGCTATGATGGGAAAA
AATTGGCAATTTGCAGGTATAATGCTCTAAAAATTCTTAGTTCCAGTTGT
CAAATCCCATGATGATGGTATTTtcagcatattcttaattttttttgcca
atttcatcatggaaTTTCTTTATTCGTTAGATAACCTTAAATGTATTAAT
TTTAACGTGTACTTGTGGAGGAGAATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053275-exon-scaffold_228-1491911889:185898..186800 | TCONS_00053275-exon-scaffold_228-1491911889:185898..186800 | Clytia hemisphaerica | exon |
| TCONS_00053275-exon-scaffold_228-1510915933:185898..186800 | TCONS_00053275-exon-scaffold_228-1510915933:185898..186800 | Clytia hemisphaerica | exon |
| TCONS_00053275-exon-scaffold_228-1575043694:185898..186800 | TCONS_00053275-exon-scaffold_228-1575043694:185898..186800 | Clytia hemisphaerica | exon |
| TCONS_00053275-exon-scaffold_228-1491911889:187568..188378 | TCONS_00053275-exon-scaffold_228-1491911889:187568..188378 | Clytia hemisphaerica | exon |
| TCONS_00053275-exon-scaffold_228-1510915933:187568..188378 | TCONS_00053275-exon-scaffold_228-1510915933:187568..188378 | Clytia hemisphaerica | exon |
| TCONS_00053275-exon-scaffold_228-1575043694:187568..188378 | TCONS_00053275-exon-scaffold_228-1575043694:187568..188378 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:185898..188378 + |
Blast
BLAST of TCONS_00053275 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2) HSP 1 Score: 216.853 bits (551), Expect = 1.347e-64 Identity = 118/295 (40.00%), Postives = 180/295 (61.02%), Query Frame = 3
Query: 282 RPIIGILSQKITEEFTPYVTHDSTYIAASYVKWIEGAGAQVIPILSTYSKKKVLKLVRSINGVLFPGGAAPLNDSNYARAARWIFNEAIRINDFEKRPFPLWGTCLGFEVLNVLGSGLSPNEILSEYDSENLLLEIDFTKEAFDSRLFHTIDMGLMRKMMFKKLSLHMHQAGINPDVYEKNSRIRKMFKVLASNLDKKGKEFVSVIEGRKYPFYGTQFHPEKNIYEWTRNEKINHSPDAILAAQYFANFFVNEARKSYIENMPVRRLKHLEDHLMFRYSPVYSGGSSLFEQVYTF 1166
+PIIGIL QK + + YIAASYVK++E AGA+V+P+ ++K L +SING+LFPGG+ L S+YA+ A+ +N +I+ D + FP+WGTCLGFE L++L SG +L+ D+ ++ + ++FT SR+F L+ + + L+ + H+ ++ + N +++K F VL +N D K EF+S +EG KYP YG Q+HPEK YEW + I+H+P+A+ A Y A FFVNEARK+ N + E L++++SP+Y+G S F+Q Y F
Sbjct: 33 KPIIGILMQKCRNKVMK--NYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFD-DGDYFPVWGTCLGFEELSLLISGEC---LLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKN---NHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIF 317
The following BLAST results are available for this feature:
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