|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053301 ID=TCONS_00053301|Name=TCONS_00053301|organism=Clytia hemisphaerica|type=transcript|length=3382bpRun BLAST on NCBI transcript from alignment at scaffold_228:494249..516253+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053301 ID=TCONS_00053301|Name=TCONS_00053301|organism=Clytia hemisphaerica|type=transcript|length=22005bp|location=Sequence derived from alignment at scaffold_228:494249..516253+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053301 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2) HSP 1 Score: 373.244 bits (957), Expect = 1.038e-111 Identity = 190/392 (48.47%), Postives = 252/392 (64.29%), Query Frame = 2
Query: 182 FRCGVVEGFYGRPWTCGQRKELFNRMHRSTMNTYIYAPKDDIKHRALWRQPYTKEEEMKLKDLIDAASAEEILFVYAISPGLDVTFSSAADISALKRKMKQVSKLGCKAFALLFDDINPTLKPADAAVYSSSAEAQAMLTNELFEHM-KSQQFLFCPTEYCKTRALPTVRKSEYLNTLGQKLHPDIDVMWTGDKVIPEVITKESIKELGEVLQRKPVIWDNIHANDYDQRRVFLGGYHGRPVELYPYLNGILTNPNCEFEANFIAIHTLGTWCRIANSVQDSSSFDVQMVDLSDXXXXXXXXXXXXXXXXXXXXXMSDELLPSLTAADVTSVIASYNYSEALKLALEEWLIEFNLNKKAPLKSYSKRNLKTQVINGQSVLTAKSYDLDVIGT 1354
F CGVVEGFYGRPW QRKELF R+ + +NTY+YAPKDD KHR WR+ Y+ EE +L LI AA EI F+YAISPGLD+TFS+ ++S LKRK+ QVS+ GC++FALLFDDI+ + AD V+SS A AQ +TNE+++++ + + FLFCPTEYC T P V +S YL T+G+KL P I+V+WTG KV+ + I ESI+E+ ++++R PVIWDNIHANDYDQ+R+FLG Y GR EL P L G+LTNPNCEFEAN++AIHTL TW + S + DV M D D + SDE D+ + + Y+ ALKLAL EWL EF + + + + K V++G ++ A S + + T
Sbjct: 60 FLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYK---SNMNGVRKDVVMTDSEDSTVSIQIKLENEG---------SDE--------DIETDVL-YSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAAPSLNATTVVT 430 HSP 2 Score: 164.851 bits (416), Expect = 2.431e-41 Identity = 114/367 (31.06%), Postives = 176/367 (47.96%), Query Frame = 2
Query: 1415 ENLQLLTEMFCLPYEHGTKGNQLLSDFEWLLENVSDIYEEPPSK--EKVSKWFEKLLQCDEKSQEVYNLFTNFSKIPNEAILYDLYPYIWDVKEVVSALESYVHWLSDSIACNLSIDTIKRSHNGLNIAINKLPIMNEFVEPWHIRYIGGLTGALHRMLPFQGGYIYLGQAPDI-PTSAVLKTRSYSPSDKDSLYRFNRGVVDKS-EVPMETTEDDIAFDYDIGVFSSFNSKTLFLIEDDEKELCGYVAAVSDNKQFVDHITDKWLPEVNTKYSETKTDRKLPHVDK------------PDEWKAPNSSHFILKLDSKVYEECILKRVINTVLSVLKTSGATTVYHKL--DGVTNQDFFLELGFFPV 2461
E+LQLL ++F LPYEHG KG Q+L +F+WL N S + K EK+ +W + + +E V +FT S N ILYD+Y Y+WD+K ++S ++S+V WL C RSH+ I EPW R GGL G R+LP G Q P + PTS V R Y P D+ S+Y+ R + D +P ++ D I D +G S + F++E DE +CGY D F+ W+P + KY++ D++L +K P+ + A S + + KV + + K ++ +LS LK +G+ + ++ D +F+ +LG F +
Sbjct: 556 EDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWL----GC--------RSHSSAQFLIGDQ-------EPWAFR--GGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGLPFQSQPDLIG-DKLVGGLLSLSLDYCFVLE-DEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFPSLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEI 899 The following BLAST results are available for this feature:
BLAST of TCONS_00053301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.