TCONS_00053303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053303
Unique NameTCONS_00053303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053303 ID=TCONS_00053303|Name=TCONS_00053303|organism=Clytia hemisphaerica|type=transcript|length=1589bp
atttttctccagAGAAGACGAAGGGTGTTGTTTGAGAAGGAACGACTCAG
TCAAATTTTTTGTGATAATTTCTTTCACAGTGCCTTTAAAACTAAAACGC
TTGATATCGCGTTTACTCGCGCCTCAAGTGAAAAGTAAAAAGTCTAAAAT
GGTTGTAATTGAAGAAAAACCCTTTCGATGTGGTGTCGTTGAAGGATTCT
ATGGACGGCCATGGACTTGTGGTCAAAGAAAGGAACTTTTCAACAGaATG
CATAGATCAACAATGAACACTTACATTTACGCCCCAAAAGATGATATTAA
ACACAGAGCTCTTTGGAGACAACCCTACACAAAAGAAGAAGAGATGAAAT
TAAAAGACCTCATTGATGCTGCAAGTGCTGAAGAAATATTGTTTGTTTAT
GCCATATCCCCTGGTCTTGATGTTACATTTTCTTCAGCTGCCGATATATC
tgcattgaaaagaaaaatgaagcagGTCAGCAAATTAGGATGTAAGGCTT
TCGCTTTACTCTTTGATGATATCAACCCAACATTGAAACCAGCTGATGCT
GCGGTCTATTCTTCATCAGCTGAGGCCCAAGCTATGCTGACCAATGAGTT
ATTTGAGCACATGAAATCTCAACAATTCTTGTTCTGCCCAACAGGTTAGT
TCTTTACTTTCATTTGGCACACAGTAggctttttcaaacaaattagaTAT
ATTAAGATTTTTATCTCTTTAATAACATCAAAGCTCTGTTCCTGTGAGAC
GGTAAAGTATTAGGTTAGAGCTTCATGAATGCTGAATGGTTGAATTGTGT
TCCTGTCATCTCAGtttctctaaattttgaaatgtgCAATAAGAATAAGG
TATTGTATGATAGGCCTCTTGCTTACTGGAATTTTACTATGATGTTGCAC
TTATTCTCAATTTGTCATACACTATTGAAATGTTATGTCTGGTAAAAATG
GAGGCGATCAACAGAAGATACAAAGAAGATTTTGCTTTAGAAATTATTTC
TCTGTGATAGCATTTTGTGCTATCTGTGCTCATATAATGTGATCTATTCT
TAGCACACACCAAAACAACTGCACCATGCAGTATCGATGCAGATATGTTG
TAATTGGAAACATCAGGAGAAAATTGTTGTTGAGTtagaaaaggtttttt
ctttttccgaAATGAAAATCCAACCCCACGCCCCCTAAGCTTAGGAGTAT
TTAAAAACAATAGGACTTAgtatatttaatttttattgcTCCAAGAGCTG
AGTAGCTTATCAAAAGGCTCTTGGAGTTTGAATGTTCGTGTTGTCCctta
atatttctaaaattttcatcaGAACTAGATAGTTGATTCTCCATCAAAGA
TTCCATGAATTATACTGCTTTACTGAAGTTGGAAGACTTTTCAAAGTAGC
GGATGCCTTCAAGCATAAGGAAAGTGTTTCATCACATGAAGCATTGTTCT
TGTGTTTTAATTAACCTTTAGCCAGTGCTATTGTTTATTTGTTTAATGAA
TCATCAGATGAAATCAGTAAGAATTTCAATTGCGCTAATAAAATAACACC
TAGAAAGTTCATCATTTTAGCTAATGCAATGACTGCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_228:494258..507791+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053303 ID=TCONS_00053303|Name=TCONS_00053303|organism=Clytia hemisphaerica|type=transcript|length=13534bp|location=Sequence derived from alignment at scaffold_228:494258..507791+ (Clytia hemisphaerica)
atttttctccagAGAAGACGAAGGGTGTTGTTTGAGAAGGAACGACTCAG
TCAAATTTTTTGTGATAATTTCTTTCACAGTGCCTTTAAAACTAAAACGC
TTGATATCGCGTTTACTCGCGCCTCAAGTGAAAAGTAAAAAGTCTAAAAT
GGTTGTAATTGAAGAAAAACCCTTTCGATGTGGTGTCGTTGAAGGTATAA
TATAACTTCCTTATTTTGTGTCCTTtcctttttaaataaaactttGATCT
AATTGGGATCCACAGCTTATCATTGATCCCAAAGGAGCCTCAGAGAAATC
ATGACTGTATTGTTTGTCTAACTAGACCCCTTTTAGTTTTTgccgttttc
aattttttaggtatttttaattactttattttcaagatatatcatgacca
gacgatgtcaatcgaacgaatcgaacgtttaaaaattacgttcgattgta
ttcgattgcgttcaattgtattagattatGTTCAACTGATTCAATAGTAC
TAGATTTTATTCACTTTCGTACggtacttaagcgctcggccgcccacgct
atctaaaaagctctaacggggtaatccaatagaccttttttcaaagagga
cgtcctgttgaataatacTTACTTTTGGATACTTTTGGATGTGTTTGAGC
GTACCGCTCTGGCAAGAATCTTTTGATCCACACCACAATCTTCATTCAAT
CCATAATTCCTGAAGGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CACGACTTCGGATTATGTGATTGATTTGAATGGATCATCCAGCCCACAAC
ACAAGTTCagttttgttaatattttttgtttgtatttgtaTTAGTTTCCC
TAGaacttagactcaaatttagagtaattggtgtttctttttaattgtcc
aattatgtagtccagccataaaaacaatgatagagccatgcataattact
gtatcttgcatattgtaataattatgcatggttttatcattctttttctg
ctggactacataattattcaacaggggtggcctctttgaaaaaaggtctt
tttaatttaatcgcaatcaaactcatcgaacataatcgtaatcgaacgaa
atcaaatgtaattgacaatcaatcgaaccaattgaacatagtcaactatc
aatcgaaccaatctaaccttactcgaacgcacaatcgaacacaatcaaat
attacccaggattcggccgttcgattaagattcaattacgtttgacaatc
gaatcgcaattattcgatcgcgttcaattacgttcgattggtacGATTGC
GATTTTTAtttgaagttgttcgattgacaccgtctggtcatGATGATAAT
GTACATTAGCGTATACGTGTTTAATTAATAGACTGATAGATCTAGAACCA
TCAACCATCCTGTTGTATTGGGTGTGCAAGTTATAATCTGTTACCCCGTG
TGGACGACATGGATTTCCCGTAAcaattttacttttgaaaaacttcagga
ttTCCGTAACATTCGAGATTTTTTATGGGATTTTCCGATACTTGGCAAGA
AAATAATGCAAACTTTATGGATTTTACAATACTTGAggcaagaaaataga
gcaaatCTTATGGATTTTCTGATACATATGACTAATAATGAGGAAAAATC
CTGGATTttccaaaacctttttttaaatttctcaggatttccaagtgaaa
aaaaatccaaaaaaccccGTCATCCACAGGGGGGGTGGACAACGGCGGAA
TTCTgtggcaaaatgttttttttgaaatccctggatttccaatacaaaat
caattttttggtggaaaaatctggaatttacgatactttttcaaaatttt
gacaaattatgtgtaatttccaagggttcaaataaaaaattgagcgGAAT
TTCCAAAGCACGTTGAAATATCAACTGGATTTCCGAGTgcttttttatct
gaaaattcctGTCATCCACCCCctatatcaaattttttctggaagagccc
aatggtTTTTTCTGGAAAGGCCTATTTCTAGTGTCAATCGCCCCAATAGC
ATTTTATAATGACATCACGCCTTACATGAAGGGCAGTTGTAAAAATCCCA
CTCTTCATCATAGCAccttatttatttgttttaatcCTTGATCCTAAGGC
GTAggctttttctcatcttcaattttctaaagaaagcgggaatttgatgc
attTGATGATATTTGAATAATTGGTGCGAAAAAGTGAAACGTGCAAAAGT
TGTAATATGGTAAATTCTTTGTTATTGATATAGGAGTGTTAGTCTACACT
GAccgaaaatcttgtgtttacttgCTGTATCTCATTTTTCAACTACTCTT
GAGTTCTGGCAGTGGGATCTTAGTGAGGGAAGTTAATCTCAAcatttctt
gtaaaatgttGGTATAAATCAAGGTGTTGCTAAAGATCCCATTTCTTTTA
AAGGCTATTCCAGTCTTCATGTTATTTCACTTATGATTTATATTACTATT
ATTGTTTGTTACTGTTACTTTCAGGATTCTATGGACGGCCATGGACTTGT
GGTCAAAGAAAGGAACTTTTCAACAGGTAGGATTGGCAATTTCTTCActt
attgaataaaaaacataatttttgcaACTCATAGCTGTATGTTGATGTTT
ATTTTGTGGAAATTTAAAGATACAGTATTctatttaaaaatagaatgtcT
CATAGTTGAGATTTTCTTGTTGAAGTGCATTCTTTTCCAAGATTGTTGTT
AtatctttttcatcattttttcaactttagaATGCATAGATCAACAATGA
ACACTTACATTTACGCCCCAAAAGATGATATTAAACACAGAGCTCTTTGG
AGACAACCCTACACAAAAGAAGAAGAGAGTATGTAAAATGAATAACGTGC
ATGAATACTAAAtggattttcagaattttttgttttttatctacTGTAAC
TGTGCTATAAAATCTTTTGGGTTATTTTTCAGCAAAGAGAAAACTCAAAT
CTAGTCTTCTCAGATCTAAttttattaagaattttatgtaCAATCATATA
TTTGAATACCTTTTAATGGGAACTAACTTTTTAACAAACTTTTCAAGTGC
AGTGAAAATGGGCTAGAGAAATTTTATTCAGaatgaaagatttatttttt
tgaaattaattctAAAGAAGTCGAAAACAACCATAATTGCCAATTTTTTA
ATCTTAGTGAAATTAAAAGACCTCATTGATGCTGCAAGTGCTGAAGAAAT
ATTGTTTGTTTATGCCATATCCCCTGGTCTTGATGTTACATTTTCTTCAG
CTGCCGATATATCtgcattgaaaagaaaaatgaagcaggtaaatttgagt
tttattgaaaatcgaGAAGCAAAATTGAAGTGACCTTACTCTTTGACACA
AACATCAAAGTATAGTTccttaaactttttgaaaggtAAATTTCAGTAGA
AAATATGCAGAATGAGGTCCTTGTTTGCCAAAGTTGATTGAGATTTTTGT
GAATAAAAATTCActatcattaatatttttttagtaGGAGtagcaatatt
ttagaaaaaatgtgTATCATATTATCTCCATAGACAATATTGGTTCAAAA
ATTGGTATTTGTTAACAACACTACTGGGTCAGAAACCGTTCGATTCGGAC
ACACGAACGCTTTTCCATGCGTGACGAACGGCGAatgcttatgatttttt
ttaataaaagcgttcgtcacgaacgggaaaccgtttgtgacgaacggttT
TTATAGAAAACCGTTCGTGAAGAACGCTTTAAAAACTTNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNtaaaaataatttgatttttctttgact
ttaaacggagtcactgagacaggggtgtataaggaaagtttaataataat
taaaatcatttgatTATTCTTTGACCTCAGTCggagtcactgagacaggg
ttgtaaggAAAGTTTAATCTACTAAGGATGAgaatcatttcattttattt
tgacttaaaaCGGGGTCACTGAGACATGgtgtaaaaaaagtttatttgat
actgattaaaatcatttgacttttctttaacttttacaTTACTTGATCGG
ATTCTTCGATTTGGGAGGGCTTGGCTTTTAGGCTATAATTTCAGCCACGT
TGTAGGCTGTACACATCCCTTCTGATACGAGTTGTTATAGGAGAAGCCGT
ATTTCTGCTCTCTGTGAAGAAAAGGAAGACAACGCAGTGTCATTTTATCA
AGATAAAAAAGACCGCCATTCTTGGGCAACATTTTCTCTCcttttttgca
acatttaaaagaaaaagaagacattccaaTGCTTATTACGTGATAGAAAT
CTCCCACGCTCTAAGAAAAGctctgattttcatttttacaatGTATATAA
ccttttcttaaaattaaaGAAGGACGGAAGTAGAAAAACGTGCAAGTTTT
CGTACTAAACGCTAGTGACAAACGCTACCTTCTTAAAACGCTTGTTGCAT
AAACGAGTCTACGTTTATAACGAACGCTTTGGAAAAGAAAGTCGCTCGAA
AAGCATTAGTAAtagtcattgcattgtttttctaaagattttCGTGTTCG
AATGTTTTTGNGTTTGTTGCATAAACGAGTCGAATTCTACGTTTATAACG
AACGCTTTGGAAAAGAAAGTCGCTCGTAAAGCATTAGTAAtagtcattgc
attgtttttctaaagattttcgtgttcaaatgtttttgaataTGTACAAA
TTAAAACAATCGAAACTAGAGAACGTAAATTTAGAACGGGATCTCTCCTT
CAAAAATGGTGGGGACTGATAACTTTTCAccatgttttgtttttggagAA
CAAATCTCACATAAACCCCTGTCTCTTACTCTATTCTTAATATCGAATGC
TTTCTCCGTAATTTTAtgagtacatgttttttataagtattGCTATCGCT
ATTGCTATTGCTATCTAGGCTCATGtgtatggcaaaaatttaagagcTTT
TCAGAATTTGTTTGCTTTTGgctggattttcgaaatttctctaaaatttt
gcttaggatataagcatccttcaaagcatttttcagctttgtaaatctct
cgatctaagcatttccgagccagcttttggatttttgaatgcttataaaa
aattaattgtATTTCTAAGATCGCTTTTATtgaatcgcttttttcgaaTC
GCTTTCTTTCGAATCGCTTTCTTTGCAACTTTTAAGagagtttcaaagat
cacttttatcaaatcgcttcatttgtaacttttaagagtgtttcaaagat
cacttttatcaaatcgctttcttcgtaacttttaagagtgtttctaagat
cacttttatcaaatcgcttttttcgaaacttttaagagtgtttcaaagat
caNTTTAAAGttatccttttgaaaaaaacattaatgaaagaagtaactca
ataacTAAATTCATTCCCCGTTCCATAAATCCAAGTACATGCTAAgtaaa
ttttcttagaaatctTTCCCATTAAAATCCATTCGTTgcgtttgtgacga
acggttNgtttcaaagatcacttttatcaaatcgctgttttcgaaacttt
tagagtgtttcaaagatcacttttatcaaatcactttcatcgtaactttt
aagagtgtttctaagatcacttttatcaaatcgctttcttcgtaactttt
cagagtgtttctaagatcacttttatcaaatcgctgtTTNatttctcaaa
tttttgtaaGCGTTCTTCACGAACGCTTTTCTTTTTAAgccgttcgtcac
aaacgggttaaaaagaaaaagcgttCGTCGCAAACGGTCGCAATCAAACT
TTTTTGTAGGGCGTTCGCGAAGGATGCAAAAGCATTCGTCGCGAACGGTT
AACCCGTTCGTCGCGAATGGAAAAGCGTTCGTGTGTCCGAATCGAACGGT
TTCTGACCCAGTAGTGCAAAGGGGCAATGTAAACAGCAAATTTTAGCCTA
CATCACCAATCATCACCAATTTTAAACTTGTTGAGCTTTTTGCGTATTGA
GACCCCCATCCTGCACATTCCTCATGCCAAATTATTATAAATAATGAATA
TCTTTTTCTGCTCAATTCAGGTCAGCAAATTAGGATGTAAGGCTTTCGCT
TTACTCTTTGATGATATCAACCCAACATTGAAACCAGCTGATGCTGCGGT
CTATTCTTCATCAGCTGAGGCCCAAGCTATGCTGACCAATGAGTTATTTG
AGCACATGAAATCTCAACAATTCTTGTTCTGCCCAACAGGTTAGTTCTTT
ACTTTCATTTGGCACACAGTAggctttttcaaacaaattagaTATATTAA
GATTTTTATCTCTTTAATAACATCAAAGCTCTGTTCCTGTGAGACGGTAA
AGTATTAGGTTAGAGCTTCATGAATGCTGAATGGTTGAATTGTGTTCCTG
TCATCTCAGtttctctaaattttgaaatgtgCAATAAGAATAAGGTATTG
TATGATAGGCCTCTTGCTTACTGGAATTTTACTATGATGTTGCACTTATT
CTCAATTTGTCATACACTATTGAAATGTTATGTCTGGTAAAAATGGAGGC
GATCAACAGAAGATACAAAGAAGATTTTGCTTTAGAAATTATTTCTCTGT
GATAGCATTTTGTGCTATCTGTGCTCATATAATGTGATCTATTCTTAGCA
CACACCAAAACAACTGCACCATGCAGTATCGATGCAGATATGTTGTAATT
GGAAACATCAGGAGAAAATTGTTGTTGAGTtagaaaaggttttttctttt
tccgaAATGAAAATCCAACCCCACGCCCCCTAAGCTTAGGAGTATTTAAA
AACAATAGGACTTAgtatatttaatttttattgcTCCAAGAGCTGAGTAG
CTTATCAAAAGGCTCTTGGAGTTTGAATGTTCGTGTTGTCCcttaatatt
tctaaaattttcatcaGAACTAGATAGTTGATTCTCCATCAAAGATTCCA
TGAATTATACTGCTTTACTGAAGTTGGAAGACTTTTCAAAGTAGCGGATG
CCTTCAAGCATAAGGAAAGTGTTTCATCACATGAAGCATTGTTCTTGTGT
TTTAATTAACCTTTAGCCAGTGCTATTGTTTATTTGTTTAATGAATCATC
AGATGAAATCAGTAAGAATTTCAATTGCGCTAATAAAATAACACCTAGAA
AGTTCATCATTTTAGCTAATGCAATGACTGCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033643XLOC_033643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053303-exon-scaffold_228-1491911889:494258..494451TCONS_00053303-exon-scaffold_228-1491911889:494258..494451Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1510915933:494258..494451TCONS_00053303-exon-scaffold_228-1510915933:494258..494451Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1575043694:494258..494451TCONS_00053303-exon-scaffold_228-1575043694:494258..494451Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1491911889:502382..502433TCONS_00053303-exon-scaffold_228-1491911889:502382..502433Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1510915933:502382..502433TCONS_00053303-exon-scaffold_228-1510915933:502382..502433Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1575043694:502382..502433TCONS_00053303-exon-scaffold_228-1575043694:502382..502433Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1491911889:502638..502735TCONS_00053303-exon-scaffold_228-1491911889:502638..502735Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1510915933:502638..502735TCONS_00053303-exon-scaffold_228-1510915933:502638..502735Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1575043694:502638..502735TCONS_00053303-exon-scaffold_228-1575043694:502638..502735Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1491911889:503065..503195TCONS_00053303-exon-scaffold_228-1491911889:503065..503195Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1510915933:503065..503195TCONS_00053303-exon-scaffold_228-1510915933:503065..503195Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1575043694:503065..503195TCONS_00053303-exon-scaffold_228-1575043694:503065..503195Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1491911889:506678..507791TCONS_00053303-exon-scaffold_228-1491911889:506678..507791Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1510915933:506678..507791TCONS_00053303-exon-scaffold_228-1510915933:506678..507791Clytia hemisphaericaexon
TCONS_00053303-exon-scaffold_228-1575043694:506678..507791TCONS_00053303-exon-scaffold_228-1575043694:506678..507791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:494258..507791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30281	2.55343	2.93222	3.46389	10.1424	7.03371	19.7074	20.9592	19.1055	18.9975	49.3391	21.8645	27.193	36.1299	24.6426	21.4704	19.272	33.8772	48.3007	53.6708	42.8726	36.2578	13.5347	19.5944	17.5867	22.4132	26.8847	47.7908	9.81799	7.86305
Blast
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BLAST of TCONS_00053303 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 2.899e-54
Identity = 95/178 (53.37%), Postives = 125/178 (70.22%), Query Frame = 2 
Query:  173 FRCGVVEGFYGRPWTCGQRKELFNRMHRSTMNTYIYAPKDDIKHRALWRQPYTKEEEMKLKDLIDAASAEEILFVYAISPGLDVTFSSAADISALKRKMKQVSKLGCKAFALLFDDINPTLKPADAAVYSSSAEAQAMLTNELFEHM-KSQQFLFCPTG*FFTFIWHTVGFFKQIRYI 703
            F CGVVEGFYGRPW   QRKELF R+ +  +NTY+YAPKDD KHR  WR+ Y+ EE  +L  LI AA   EI F+YAISPGLD+TFS+  ++S LKRK+ QVS+ GC++FALLFDDI+  +  AD  V+SS A AQ  +TNE+++++ + + FLFCPT    TF +  V     +R +
Sbjct:   60 FLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTV 237
The following BLAST results are available for this feature:
BLAST of TCONS_00053303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OGA2.899e-5453.37Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 ... [more]
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