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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053304 ID=TCONS_00053304|Name=TCONS_00053304|organism=Clytia hemisphaerica|type=transcript|length=3916bpRun BLAST on NCBI transcript from alignment at scaffold_228:494272..516253+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053304 ID=TCONS_00053304|Name=TCONS_00053304|organism=Clytia hemisphaerica|type=transcript|length=21982bp|location=Sequence derived from alignment at scaffold_228:494272..516253+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053304 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 1.005e-51 Identity = 95/178 (53.37%), Postives = 125/178 (70.22%), Query Frame = 3
Query: 159 FRCGVVEGFYGRPWTCGQRKELFNRMHRSTMNTYIYAPKDDIKHRALWRQPYTKEEEMKLKDLIDAASAEEILFVYAISPGLDVTFSSAADISALKRKMKQVSKLGCKAFALLFDDINPTLKPADAAVYSSSAEAQAMLTNELFEHM-KSQQFLFCPTG*FFTFIWHTVGFFKQIRYI 689
F CGVVEGFYGRPW QRKELF R+ + +NTY+YAPKDD KHR WR+ Y+ EE +L LI AA EI F+YAISPGLD+TFS+ ++S LKRK+ QVS+ GC++FALLFDDI+ + AD V+SS A AQ +TNE+++++ + + FLFCPT TF + V +R +
Sbjct: 60 FLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTV 237 HSP 2 Score: 178.718 bits (452), Expect = 1.545e-45 Identity = 99/234 (42.31%), Postives = 134/234 (57.26%), Query Frame = 1
Query: 1129 EYCKTRALPTVRKSEYLNTLGQKLHPDIDVMWTGDKVIPEVITKESIKELGEVLQRKPVIWDNIHANDYDQRRVFLGGYHGRPVELYPYLNGILTNPNCEFEANFIAIHTLGTWCRIANSVQDSSSFDVQMVDLSDXXXXXXXXXXXXXXXXXXXXXMSDELLPSLTAADVTSVIASYNYSEALKLALEEWLIEFNLNKKAPLKSYSKRNLKTQVINGQSVLTAKSYDLDVIGT 1830
EYC T P V +S YL T+G+KL P I+V+WTG KV+ + I ESI+E+ ++++R PVIWDNIHANDYDQ+R+FLG Y GR EL P L G+LTNPNCEFEAN++AIHTL TW + S + DV M D D + SDE D+ + + Y+ ALKLAL EWL EF + + + + K V++G ++ A S + + T
Sbjct: 218 EYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYK---SNMNGVRKDVVMTDSEDSTVSIQIKLENEG---------SDE--------DIETDVL-YSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAAPSLNATTVVT 430 HSP 3 Score: 122.479 bits (306), Expect = 4.665e-28 Identity = 71/188 (37.77%), Postives = 95/188 (50.53%), Query Frame = 1
Query: 1891 ENLQLLTEMFCLPYEHGTKGNQLLSDFEWLLENVSDIYEEPPSK--EKVSKWFEKLLQCDEKSQEVYNLFTNFSKIPNEAILYDLYPYIWDVKEVVSALESYVHWLSDSIACNLSIDTIKRSHNGLNIAINKLPIMNEFVEPWHIRYIGGLTGALHRMLPFQGGYIYLGQAPDI-PTSAVLKTRSYSP 2445
E+LQLL ++F LPYEHG KG Q+L +F+WL N S + K EK+ +W + + +E V +FT S N ILYD+Y Y+WD+K ++S ++S+V WL C RSH+ I EPW R GGL G R+LP G Q P + PTS V R Y P
Sbjct: 556 EDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWL----GC--------RSHSSAQFLIGDQ-------EPWAFR--GGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFP 722 The following BLAST results are available for this feature:
BLAST of TCONS_00053304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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