|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053334 ID=TCONS_00053334|Name=TCONS_00053334|organism=Clytia hemisphaerica|type=transcript|length=3757bpRun BLAST on NCBI protein sequence of TCONS_00053334-protein >TCONS_00053334-protein ID=TCONS_00053334-protein|Name=TCONS_00053334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=880bp MRDVVWTFEDITMLVGSDLPIFGEGRYPAVSLRLRDASKPINVLTGMDYWRun BLAST on NCBI transcript from alignment at scaffold_228:473285..493872- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053334 ID=TCONS_00053334|Name=TCONS_00053334|organism=Clytia hemisphaerica|type=transcript|length=20588bp|location=Sequence derived from alignment at scaffold_228:473285..493872- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_228:473285..493872- >TCONS_00053334 ID=TCONS_00053334|Name=TCONS_00053334|organism=Clytia hemisphaerica|type=CDS|length=18501bp|location=Sequence derived from alignment at scaffold_228:473285..493872- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053334 vs. Swiss-Prot (Human)
Match: EDRF1 (Erythroid differentiation-related factor 1 OS=Homo sapiens GN=EDRF1 PE=1 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 3.110e-76 Identity = 141/257 (54.86%), Postives = 186/257 (72.37%), Query Frame = 3
Query: 849 SDTPNQSNQ------PSLSTTNLTSTAQESNIPAPFSNDFPAGSF---FMRDVVWTFEDITMLVGSDLPIFGEGRYPAVSLRLRDASKPINVLTGMDYWLDNLMCNVPELMMCYHLNGIVQKYEKIKTAELPFLEGSQFSPKIIKDVAQNILSFLKSNCTKEGHTYWLFKSSKEDVVKLYDLTSIAQENESP--DPFGSSVGFLLYQIAFNMYTTLERTDHNILKMVALLENCIKIFQKERCNELLAMANFLLSDLY 1586
S+ P+ S+Q PS ++ S +E N+ F++ + F+R+++WTFEDI MLVGS++PIFG GRYPAVSLRLRD +KPINVLTG+DYWLDNL+CNVPEL+MC+H+NGIVQKYE IKT E+P LE S FS K+IKD+AQNILSFLKSNCTKEGHTYWLFK+S D+VKLYDLT++ +E E +PF V LLY++A NM + + + LL NC+K+ K R +++A AN++LS+L+
Sbjct: 256 SEDPSASSQGSEPLEPSYIVGHVASAPKEQNLITLFNDGEHSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCLKLLDKSRHPQIIASANYMLSELF 512 The following BLAST results are available for this feature:
BLAST of TCONS_00053334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.