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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053349 ID=TCONS_00053349|Name=TCONS_00053349|organism=Clytia hemisphaerica|type=transcript|length=1089bp TAACGGTCTAGGGTAATAAATAGTTgcggtttttcatttttctttctatt acGCTTTTGAATTTTAGAGCACATGTTTTAACCGCAACAAGCATCGTAAT AGCTACTTTCAACGTTAGATGCCAAGTGTTGTGGTGAAACAGAGTTTGCA TTGCTTAATATACTAGCAACCTGTTTGACAAGAAATTCTATTGAGAGTGA GTTCCGACTGAAGCCTTGGAAGATTGAATCCACGATCTTGGATAAGGATA TCCACGATggataaattgaaaattgctTTCTTCTCAATTTGTCTTATATG TACGGTCACAGCATATCCTCTGTACTTCACAAACACAGAGGAACcaaaca aaaagtcatcaaaaccTACGACCGTCAGCTCATCTAGAACTACACTAACC ACAACGGCAACAAAACCGACGACGACGACGATTTCGACAACACGTCGCAG AAATACCATTGTCGAACATCCTAAGCGCTCATGCTCGTATTTCCCTTTGT GCACAGAGGTTGAACGAAATGCCAAAAAATGTCTCGGTTGTTATGAACAA GATTTTATGCTGACTGAATTTTGGGGAATATGTTTCTGCTATGAGCAACC ACCGATGATAGCAATGCCATGATATCGTAATTAGTAATCTATTGGTTCCA ATTGTGAAAATGCTACTCATCTAATATTggaccattccattttatatcca tgcaGGATGAACGAACattccagggggtaatccgagaaaactttccaggg ggtgtttttttcatttttccaagggggtaaaaagtcattgtaaaatttcc aggggtaaatgactgattttagttcgtccaccctcgcCTTAATGTATgag aagaatttttccaagggtgtttttgcaaattttgccattttccaggggct attcacaaattttcaatatttttttttgacttgaaaaggttcgtccaccc cactgtatggttttttaatggaacagcccattatTGATTGTGTTTGAAGA AGAACAATAACTTGCAATGAACTTAGACCTCATCGATGTGCTCCAAGACA ACAGCTTGGCCTCAGTGATTGAAAGTTCTGATGGAAAAG Run BLAST on NCBI protein sequence of TCONS_00053349-protein >TCONS_00053349-protein ID=TCONS_00053349-protein|Name=TCONS_00053349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MDKLKIAFFSICLICTVTAYPLYFTNTEEPNKKSSKPTTVSSSRTTLTTT ATKPTTTTISTTRRRNTIVEHPKRSCSYFPLCTEVERNAKKCLGCYEQDF MLTEFWGICFCYEQPPMIAMP Run BLAST on NCBI transcript from alignment at scaffold_228:708126..709580- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053349 ID=TCONS_00053349|Name=TCONS_00053349|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at scaffold_228:708126..709580- (Clytia hemisphaerica) TAACGGTCTAGGGTAATAAATAGTTGCGGTTTTTCATTTTTCTTTCTATT
ACGCTTTTGAATTTTAGAGCACATGTTTTAACCGCAACAAGCATCGTAAT
AGCTACTTTCAACGTTAGATGCCAAGTGTTGTGGTGAAACAGAGTTTGCA
TTGCTTAATATACTAGCAACCTGTTTGACAAGAAATTCTATTGAGAGTGA
GTTCCGACTGAAGCCTTGGAAGATTGAATCCACGATCTTGGATAAGGATA
TCCACGATGGATAAATTGAAAATTGCTTTCTTCTCAATTTGTCTTATATG
TACGGTAAGTTTCTTGTATTCTGCAATAGAAGTCCCTTCTTTTTAACACC
TTGTAATATTTTTTTATTTTAAAAAGATTACCCCGTCTAGGCTTTATGTT
CAAATGTTGACAGTGGCTCTAGAAAATGGATTTGAAACATTCAGGAAAAT
TCTCGGCTTCTATTTCAACATTTATATGATTTAAGCTGCGAAAAGAAAAC
TAGGTTTGAGCTGTTACGAATGTGCTAGGGACCTAAACCTCCTTATTGAG
GTGACGTTTTATTTGCCGTCTAAAAGGTTCAACTTAGTAATAACGATTAG
CATTATGCAGATGTATTGTGGGAATCTCTACTCTTCAAGATTCCTTTCTA
TCTCTTTATTTTACTCCTAGGTCACAGCATATCCTCTGTACTTCACAAAC
ACAGAGGAACCAAACAAAAAGTCATCAAAACCTACGACCGTCAGCTCATC
TAGAACTACACTAACCACAACGGCAACAAAACCGACGACGACGACGATTT
CGACAACACGTCGCAGAAATACCATTGTCGAACATCCTAAGCGCTCATGC
TCGTATTTCCCTTTGTGCACAGAGGTTGAACGAAATGCCAAAAAATGTCT
CGGTTGTTATGAACAAGATTTTATGCTGACTGAATTTTGGGGAATATGTT
TCTGCTATGAGCAACCACCGATGATAGCAATGCCATGATATCGTAATTAG
TAATCTATTGGTTCCAATTGTGAAAATGCTACTCATCTAATATTGGACCA
TTCCATTTTATATCCATGCAGGATGAACGAACATTCCAGGGGGTAATCCG
AGAAAACTTTCCAGGGGGTGTTTTTTTCATTTTTCCAAGGGGGTAAAAAG
TCATTGTAAAATTTCCAGGGGTAAATGACTGATTTTAGTTCGTCCACCCT
CGCCTTAATGTATGAGAAGAATTTTTCCAAGGGTGTTTTTGCAAATTTTG
CCATTTTCCAGGGGCTATTCACAAATTTTCAATATTTTTTTTTGACTTGA
AAAGGTTCGTCCACCCCACTGTATGGTTTTTTAATGGAACAGCCCATTAT
TGATTGTGTTTGAAGAAGAACAATAACTTGCAATGAACTTAGACCTCATC
GATGTGCTCCAAGACAACAGCTTGGCCTCAGTGATTGAAAGTTCTGATGG
AAAAG Coding sequence (CDS) from alignment at scaffold_228:708126..709580- >TCONS_00053349 ID=TCONS_00053349|Name=TCONS_00053349|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_228:708126..709580- (Clytia hemisphaerica) GTCACAGCATATCCTCTGTACTTCACAAACACAGAGGAACCAAACAAAAA GTCATCAAAACCTACGACCGTCAGCTCATCTAGAACTACACTAACCACAA CGGCAACAAAACCGACGACGACGACGATTTCGACAACACGTCGCAGAAAT ACCATTGTCGAACATCCTAAGCGCTCATGCTCGTATTTCCCTTTGTGCAC AGAGGTTGAACGAAATGCCAAAAAATGTCTCGGTTGTTATGAACAAGATT TTATGCTGACTGAATTTTGGGGAATATGTTTCTGCTATGAGCAACCACCG ATGATAGCAATGCCATGAATGGATAAATTGAAAATTGCTTTCTTCTCAAT TTGTCTTATATGTACGGTCACAGCATATCCTCTGTACTTCACAAACACAG AGGAACCAAACAAAAAGTCATCAAAACCTACGACCGTCAGCTCATCTAGA ACTACACTAACCACAACGGCAACAAAACCGACGACGACGACGATTTCGAC AACACGTCGCAGAAATACCATTGTCGAACATCCTAAGCGCTCATGCTCGT ATTTCCCTTTGTGCACAGAGGTTGAACGAAATGCCAAAAAATGTCTCGGT TGTTATGAACAAGATTTTATGCTGACTGAATTTTGGGGAATATGTTTCTG CTATGAGCAACCACCGATGATAGCAATGCCATGAATGGATAAATTGAAAA TTGCTTTCTTCTCAATTTGTCTTATATGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053349-exon-scaffold_228-1575043694:709277..709580 | TCONS_00053349-exon-scaffold_228-1575043694:709277..709580 | Clytia hemisphaerica | exon |
TCONS_00053349-exon-scaffold_228-1575043694:708126..708910 | TCONS_00053349-exon-scaffold_228-1575043694:708126..708910 | Clytia hemisphaerica | exon |
TCONS_00053349-exon-scaffold_228-1510915933:709277..709580 | TCONS_00053349-exon-scaffold_228-1510915933:709277..709580 | Clytia hemisphaerica | exon |
TCONS_00053349-exon-scaffold_228-1510915933:708126..708910 | TCONS_00053349-exon-scaffold_228-1510915933:708126..708910 | Clytia hemisphaerica | exon |
TCONS_00053349-exon-scaffold_228-1491911889:709277..709580 | TCONS_00053349-exon-scaffold_228-1491911889:709277..709580 | Clytia hemisphaerica | exon |
TCONS_00053349-exon-scaffold_228-1491911889:708126..708910 | TCONS_00053349-exon-scaffold_228-1491911889:708126..708910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_228 | supercontig | scaffold_228:708126..709580 - |
Blast
The following BLAST results are available for this feature:
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