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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053372 ID=TCONS_00053372|Name=TCONS_00053372|organism=Clytia hemisphaerica|type=transcript|length=1565bp
TTTTCAAGGTGTGAGGTGttttatactgattttctaagaTTTAATTCact
taaaattcttaaaacagTTTGAgcttaaatattttctattttttaatggT
AGGTATATTTGACTACACAATGGCTTCAAGATAACTAAAGTCGGATAACA
ATTTAAAACAAGGGTGCCATAAGAATCACTTTTACTCAGTTTAGATTTTA
CCAGCAGTGTTGTTTGTTAGAAATTATAATATTCATTAACAGGAacaaac
attttgattttttatgaaagtcGGGTTTTTCTTCATAACTATGAAATTCT
CTTTTTCTAAAGCATTCGTATTTCTACCCATCATGGCATACGACAACATC
ACTAACACATTTTATCTTTATGATAAATTTAGATCAATCAAAACAAGTTT
CACAACACTTGAAGAACACATTACGCGCCATTTCACGTCATCAACATCAA
CCCATAAGAAATACAAAATGAGTAAATCTTCCAACCCTTCAAGCAGTCGC
CCATCAAGTGGGAAACACACTGGGAGCGGTAAACCCAAAAAGAGAATCTC
ACCTTTGAGTGAGCCTATTAATCGAGGCAAACAAAGCATTCATTATGTTT
TAACTGAGGAGGAGCGTGAGATATTATTCCGTGGTATGAAACCAAAGGAT
CAAGGAGATGGTCTGGTTGACCTTGAAGAGACAGTTGAAGTTGAggagaa
aaacgaagaagaaaaatcagcCCTTACTTGCATTCTTTTGCTTATGTTTG
AAGAGCTTGAACATCAACCTGTTGTTTATGAGAAGTTAATGGGCTCGGAA
CTCTTTGATGGATGTTTGAAAAAAGTACCGGAAGGACAGACAGAACTTGt
tcgaaaaattttaaagaattcttgATTCTTGGATATTAATGAGGATAATT
ATATGGCTATTCGATTTGAATTAAATAGTCATAAGCGAATAATTCTTTCT
TGgctagaaataatgaaaaaggAAGAAGAGTATGCGAATATCCAGTTTGC
CAAGGTTGCGGTCAATCAAGATTTGTTATCCAAGGGTTTTCAAACGAACA
TTTGGCGTGCAATGTCACTTAGAGTATTTGGATGATATTCGAGAAATTTT
AGACAATTTCTAATTATCAGTGNTGCGAATATCCAGTTTGCCAAGGTTGC
GGTCAACCAAGATTTGTTATCCAAGGGTTTTCAAACGAACATTTGGCGTG
CAATGTCACTTAGACTATTTGGACGATATTCGAGAAATTTTAGACAATTT
CTAATTAgcagtaaaatttttcaaattaacaagatggaaaatttagaaat
ttaatcTCACAAAGAAACGAATCCGAATATGAAATTCTATAGTTCCAAAT
TAAATTTTGGATGTATTGATAATTTTTATatagttttaatattttcataa
aatttaaaaaacacgatctaaaaatgttcttcatcaagttttgtttactt
taatgggataaattttcgcggggattaaatttcgcggatttgggtgtcat
ccgcgaaaatccgcgaaattaaattccaatggaaatttggaagagCCCCA
tctgcgaaatatttc Run BLAST on NCBI protein sequence of TCONS_00053372-protein >TCONS_00053372-protein ID=TCONS_00053372-protein|Name=TCONS_00053372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MKVGFFFITMKFSFSKAFVFLPIMAYDNITNTFYLYDKFRSIKTSFTTLE
EHITRHFTSSTSTHKKYKMSKSSNPSSSRPSSGKHTGSGKPKKRISPLSE
PINRGKQSIHYVLTEEEREILFRGMKPKDQGDGLVDLEETVEVEEKNEEE
KSALTCILLLMFEELEHQPVVYEKLMGSELFDGCLKKVPEGQTELVRKIL
KNS Run BLAST on NCBI transcript from alignment at scaffold_228:445660..447224 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053372 ID=TCONS_00053372|Name=TCONS_00053372|organism=Clytia hemisphaerica|type=transcript|length=1565bp|location=Sequence derived from alignment at scaffold_228:445660..447224 (Clytia hemisphaerica)
gaaatatttcgcagaTGGGGctcttccaaatttccattggaatttaattt
cgcggattttcgcggatgacacccaaatccgcgaaatttaatccccgcga
aaatttatcccattaaagtaaacaaaacttgatgaagaacatttttagat
cgtgttttttaaattttatgaaaatattaaaactatATAAAAATTATCAA
TACATCCAAAATTTAATTTGGAACTATAGAATTTCATATTCGGATTCGTT
TCTTTGTGAgattaaatttctaaattttccatcttgttaatttgaaaaat
tttactgcTAATTAGAAATTGTCTAAAATTTCTCGAATATCGTCCAAATA
GTCTAAGTGACATTGCACGCCAAATGTTCGTTTGAAAACCCTTGGATAAC
AAATCTTGGTTGACCGCAACCTTGGCAAACTGGATATTCGCANCACTGAT
AATTAGAAATTGTCTAAAATTTCTCGAATATCATCCAAATACTCTAAGTG
ACATTGCACGCCAAATGTTCGTTTGAAAACCCTTGGATAACAAATCTTGA
TTGACCGCAACCTTGGCAAACTGGATATTCGCATACTCTTCTTccttttt
cattatttctagcCAAGAAAGAATTATTCGCTTATGACTATTTAATTCAA
ATCGAATAGCCATATAATTATCCTCATTAATATCCAAGAATcaagaattc
tttaaaatttttcgaaCAAGTTCTGTCTGTCCTTCCGGTACTTTTTTCAA
ACATCCATCAAAGAGTTCCGAGCCCATTAACTTCTCATAAACAACAGGTT
GATGTTCAAGCTCTTCAAACATAAGCAAAAGAATGCAAGTAAGGgctgat
ttttcttcttcgtttttctccTCAACTTCAACTGTCTCTTCAAGGTCAAC
CAGACCATCTCCTTGATCCTTTGGTTTCATACCACGGAATAATATCTCAC
GCTCCTCCTCAGTTAAAACATAATGAATGCTTTGTTTGCCTCGATTAATA
GGCTCACTCAAAGGTGAGATTCTCTTTTTGGGTTTACCGCTCCCAGTGTG
TTTCCCACTTGATGGGCGACTGCTTGAAGGGTTGGAAGATTTACTCATTT
TGTATTTCTTATGGGTTGATGTTGATGACGTGAAATGGCGCGTAATGTGT
TCTTCAAGTGTTGTGAAACTTGTTTTGATTGATCTAAATTTATCATAAAG
ATAAAATGTGTTAGTGATGTTGTCGTATGCCATGATGGGTAGAAATACGA
ATGCTTTAGAAAAAGAGAATTTCATAGTTATGAAGAAAAACCCgactttc
ataaaaaatcaaaatgtttgtTCCTGTTAATGAATATTATAATTTCTAAC
AAACAACACTGCTGGTAAAATCTAAACTGAGTAAAAGTGATTCTTATGGC
ACCCTTGTTTTAAATTGTTATCCGACTTTAGTTATCTTGAAGCCATTGTG
TAGTCAAATATACCTAccattaaaaaatagaaaatatttaagcTCAAAct
gttttaagaattttaagtGAATTAAAtcttagaaaatcagtataaaaCAC
CTCACACCTTGAAAA Coding sequence (CDS) from alignment at scaffold_228:445660..447224 >TCONS_00053372 ID=TCONS_00053372|Name=TCONS_00053372|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_228:445660..447224 (Clytia hemisphaerica)
TcaagaattctttaaaatttttcgaaCAAGTTCTGTCTGTCCTTCCGGTA
CTTTTTTCAAACATCCATCAAAGAGTTCCGAGCCCATTAACTTCTCATAA
ACAACAGGTTGATGTTCAAGCTCTTCAAACATAAGCAAAAGAATGCAAGT
AAGGgctgatttttcttcttcgtttttctccTCAACTTCAACTGTCTCTT
CAAGGTCAACCAGACCATCTCCTTGATCCTTTGGTTTCATACCACGGAAT
AATATCTCACGCTCCTCCTCAGTTAAAACATAATGAATGCTTTGTTTGCC
TCGATTAATAGGCTCACTCAAAGGTGAGATTCTCTTTTTGGGTTTACCGC
TCCCAGTGTGTTTCCCACTTGATGGGCGACTGCTTGAAGGGTTGGAAGAT
TTACTCATTTTGTATTTCTTATGGGTTGATGTTGATGACGTGAAATGGCG
CGTAATGTGTTCTTCAAGTGTTGTGAAACTTGTTTTGATTGATCTAAATT
TATCATAAAGATAAAATGTGTTAGTGATGTTGTCGTATGCCATGATGGGT
AGAAATACGAATGCTTTAGAAAAAGAGAATTTCATAGTTATGAAGAAAAA
CCCgactttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053372-exon-scaffold_228-1491911889:445660..447224 | TCONS_00053372-exon-scaffold_228-1491911889:445660..447224 | Clytia hemisphaerica | exon |
| TCONS_00053372-exon-scaffold_228-1510915933:445660..447224 | TCONS_00053372-exon-scaffold_228-1510915933:445660..447224 | Clytia hemisphaerica | exon |
| TCONS_00053372-exon-scaffold_228-1575043694:445660..447224 | TCONS_00053372-exon-scaffold_228-1575043694:445660..447224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:445660..447224 . |
Blast
The following BLAST results are available for this feature:
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