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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053379 ID=TCONS_00053379|Name=TCONS_00053379|organism=Clytia hemisphaerica|type=transcript|length=1718bp
atatttcaaaaataaagagatgggaaaaaataattataaatcAACTGTTG
CTGAATCGCTAGCGTTATGGGAcgattttatgaaatatattttctaGTCG
TATTTCTTCACTTCAGGCTAACGTCAACAGCAAAAGCACCTTTGATTCAA
TTCTTTTATTGGAATGTTGATCCTTTCTTTCATATAACTCAATATAATGA
CACTCATGGCtctttatttgaaagttttcaacTAGCAGAACTTCACTGTC
GCCGACGATCCTATAACAAAGCCAACAATTGCGATGCCGACGATAAGTAT
GGTTCAACAAGGAAATTCATCGAGTATGTGAAAGTTGCTGTTGGTCACCG
AAAATTTCTCGAAGCTATATTTTCTCCTAATCGATTGAGTAAAGTTAATA
CATCTGAGTACCGAGGAGATTGTGATCAACCATTATTACAAATATGGGGT
GTTATTTTTATGGATAAGTCAGAAGAATGGATTGATTTGAGATTAAAGAA
TTTGACGTTGTTCAAATACACAACGAGCGAGAAACTAGCGTTGGTTGCCA
AACGGTCCTCCATCCTTTTGACGAACAAAATNTGAGAAACTAGCGTTGGT
TACCAAACGGTCCTCCATCCTTTTGACGAACAAAATCTTGATTGGTATTT
CCAACTGCACAGAACCGATCTTTATTTCTGTCGTCATGGCATTCATATTC
GGAACATTGTTTTGGTTTGCAGAGCACCGCggaaatgatgacgtcagcaa
atattttttgacaggTATTCAGGACGCAGCTTGGTGTTGTTTTGTATCCA
TGACGACAATTGGTTATGGCGATGTATTAGCGAAAAGTGTAATCGGGAAA
CTTGTCATGTGGATTTGGATTACAATCGGGTTACTTTTTATAGCTGTTAT
TTGCGGAAATGTTTTTGTTGCTGTTGACAACCCACCTGATTTTCACACAA
AACGAATCACAGTAATATCTGATACTATAGCTGAGAAATACGCTAGACAC
AACCTAAATGCTGAGGTTATCCAAGTGGGAACGTACAGAGAGATGTTTAG
CTTAATTTCCGACTCTAAAGCCGACGCGGCGTTGATGAATAGTGATGTGT
ATTCAGTCTATCAAGGGTTGAGCGATCGAGACTCAATGTTAAACGAGAAA
TTAAACTGCGTTAAAGAATATGAAGTTAACCAACCCATCTTACTTGCTTT
TCAAGATATATCATCGATGTCACCAAAAGCTAAGGAGCTTTTTCAATGCA
TGACAGGCGAACAAAACAAACGCCTcatatttgattttccgattATGCAA
AATCCAACACAATCTCGAGTTGATGTTGTTTACAACGGAAGATTAAACGG
TGAATACTTTCTTTACTTGTTTCTGGTGACTCTGATCTTGTTCATTTTTT
GCACCATATACGCATTTTTCTTAGGTAAAATCAACATCAGTAGAAATTGT
ACTCAATCAGGATAGAGATATTTGAACACTAATTTTCTGTGGGCATTTGC
Attaccgtgaatagcacaggtcaaaatcatatattgacgctgtgccgacg
aatcgagattctattcagcgcgcaatcaacgaagacaaaagtaaccatga
cgaccatccaagatcttggatgaagttcaaagttgatatttttattcccg
tcgtttaaaactcaacttaaaaaaagtcatcaatgctttgtaaaaaaagt
cagtgatagagaatccta Run BLAST on NCBI protein sequence of TCONS_00053379-protein >TCONS_00053379-protein ID=TCONS_00053379-protein|Name=TCONS_00053379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MAFIFGTLFWFAEHRGNDDVSKYFLTGIQDAAWCCFVSMTTIGYGDVLAK
SVIGKLVMWIWITIGLLFIAVICGNVFVAVDNPPDFHTKRITVISDTIAE
KYARHNLNAEVIQVGTYREMFSLISDSKADAALMNSDVYSVYQGLSDRDS
MLNEKLNCVKEYEVNQPILLAFQDISSMSPKAKELFQCMTGEQNKRLIFD
FPIMQNPTQSRVDVVYNGRLNGEYFLYLFLVTLILFIFCTIYAFFLGKIN
ISRNCTQSG Run BLAST on NCBI transcript from alignment at scaffold_228:592925..594642 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053379 ID=TCONS_00053379|Name=TCONS_00053379|organism=Clytia hemisphaerica|type=transcript|length=1718bp|location=Sequence derived from alignment at scaffold_228:592925..594642 (Clytia hemisphaerica)
taggattctctatcactgactttttttacaaagcattgatgacttttttt
aagttgagttttaaacgacgggaataaaaatatcaactttgaacttcatc
caagatcttggatggtcgtcatggttacttttgtcttcgttgattgcgcg
ctgaatagaatctcgattcgtcggcacagcgtcaatatatgattttgacc
tgtgctattcacggtaaTGCAAATGCCCACAGAAAATTAGTGTTCAAATA
TCTCTATCCTGATTGAGTACAATTTCTACTGATGTTGATTTTACCTAAGA
AAAATGCGTATATGGTGCAAAAAATGAACAAGATCAGAGTCACCAGAAAC
AAGTAAAGAAAGTATTCACCGTTTAATCTTCCGTTGTAAACAACATCAAC
TCGAGATTGTGTTGGATTTTGCATaatcggaaaatcaaatatgAGGCGTT
TGTTTTGTTCGCCTGTCATGCATTGAAAAAGCTCCTTAGCTTTTGGTGAC
ATCGATGATATATCTTGAAAAGCAAGTAAGATGGGTTGGTTAACTTCATA
TTCTTTAACGCAGTTTAATTTCTCGTTTAACATTGAGTCTCGATCGCTCA
ACCCTTGATAGACTGAATACACATCACTATTCATCAACGCCGCGTCGGCT
TTAGAGTCGGAAATTAAGCTAAACATCTCTCTGTACGTTCCCACTTGGAT
AACCTCAGCATTTAGGTTGTGTCTAGCGTATTTCTCAGCTATAGTATCAG
ATATTACTGTGATTCGTTTTGTGTGAAAATCAGGTGGGTTGTCAACAGCA
ACAAAAACATTTCCGCAAATAACAGCTATAAAAAGTAACCCGATTGTAAT
CCAAATCCACATGACAAGTTTCCCGATTACACTTTTCGCTAATACATCGC
CATAACCAATTGTCGTCATGGATACAAAACAACACCAAGCTGCGTCCTGA
ATAcctgtcaaaaaatatttgctgacgtcatcatttccGCGGTGCTCTGC
AAACCAAAACAATGTTCCGAATATGAATGCCATGACGACAGAAATAAAGA
TCGGTTCTGTGCAGTTGGAAATACCAATCAAGATTTTGTTCGTCAAAAGG
ATGGAGGACCGTTTGGTAACCAACGCTAGTTTCTCANATTTTGTTCGTCA
AAAGGATGGAGGACCGTTTGGCAACCAACGCTAGTTTCTCGCTCGTTGTG
TATTTGAACAACGTCAAATTCTTTAATCTCAAATCAATCCATTCTTCTGA
CTTATCCATAAAAATAACACCCCATATTTGTAATAATGGTTGATCACAAT
CTCCTCGGTACTCAGATGTATTAACTTTACTCAATCGATTAGGAGAAAAT
ATAGCTTCGAGAAATTTTCGGTGACCAACAGCAACTTTCACATACTCGAT
GAATTTCCTTGTTGAACCATACTTATCGTCGGCATCGCAATTGTTGGCTT
TGTTATAGGATCGTCGGCGACAGTGAAGTTCTGCTAgttgaaaactttca
aataaagaGCCATGAGTGTCATTATATTGAGTTATATGAAAGAAAGGATC
AACATTCCAATAAAAGAATTGAATCAAAGGTGCTTTTGCTGTTGACGTTA
GCCTGAAGTGAAGAAATACGACtagaaaatatatttcataaaatcgTCCC
ATAACGCTAGCGATTCAGCAACAGTTgatttataattattttttcccatc
tctttatttttgaaatat Coding sequence (CDS) from alignment at scaffold_228:592925..594642 >TCONS_00053379 ID=TCONS_00053379|Name=TCONS_00053379|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_228:592925..594642 (Clytia hemisphaerica)
CTATCCTGATTGAGTACAATTTCTACTGATGTTGATTTTACCTAAGAAAA
ATGCGTATATGGTGCAAAAAATGAACAAGATCAGAGTCACCAGAAACAAG
TAAAGAAAGTATTCACCGTTTAATCTTCCGTTGTAAACAACATCAACTCG
AGATTGTGTTGGATTTTGCATaatcggaaaatcaaatatgAGGCGTTTGT
TTTGTTCGCCTGTCATGCATTGAAAAAGCTCCTTAGCTTTTGGTGACATC
GATGATATATCTTGAAAAGCAAGTAAGATGGGTTGGTTAACTTCATATTC
TTTAACGCAGTTTAATTTCTCGTTTAACATTGAGTCTCGATCGCTCAACC
CTTGATAGACTGAATACACATCACTATTCATCAACGCCGCGTCGGCTTTA
GAGTCGGAAATTAAGCTAAACATCTCTCTGTACGTTCCCACTTGGATAAC
CTCAGCATTTAGGTTGTGTCTAGCGTATTTCTCAGCTATAGTATCAGATA
TTACTGTGATTCGTTTTGTGTGAAAATCAGGTGGGTTGTCAACAGCAACA
AAAACATTTCCGCAAATAACAGCTATAAAAAGTAACCCGATTGTAATCCA
AATCCACATGACAAGTTTCCCGATTACACTTTTCGCTAATACATCGCCAT
AACCAATTGTCGTCATGGATACAAAACAACACCAAGCTGCGTCCTGAATA
cctgtcaaaaaatatttgctgacgtcatcatttccGCGGTGCTCTGCAAA
CCAAAACAATGTTCCGAATATGAATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053379-exon-scaffold_228-1491911889:592925..594642 | TCONS_00053379-exon-scaffold_228-1491911889:592925..594642 | Clytia hemisphaerica | exon |
| TCONS_00053379-exon-scaffold_228-1510915933:592925..594642 | TCONS_00053379-exon-scaffold_228-1510915933:592925..594642 | Clytia hemisphaerica | exon |
| TCONS_00053379-exon-scaffold_228-1575043694:592925..594642 | TCONS_00053379-exon-scaffold_228-1575043694:592925..594642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:592925..594642 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013099 | K_chnl_dom |
Blast
The following BLAST results are available for this feature:
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