TCONS_00053398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053398
Unique NameTCONS_00053398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053398 ID=TCONS_00053398|Name=TCONS_00053398|organism=Clytia hemisphaerica|type=transcript|length=328bp
ACTTACCGGCGAgaaacaaagaacaacgtgtaAATTGTTCTTGACACGTG
TGATAAAGTAATCATAAAGATTTTCATTGGTCGGTGGACGTCTTGGATAT
TCTTTTTTCATGACAGAAATTAAATCTTGCGTTATTTCATCAATCTCATC
CCTTTGGAATAGGTTGGATACCTCTCCTGATGCCAACACGTTGTTCATGT
ATTCCAAGAAACCTTCATCTTTAATTTCGTtgtcagtgaaaatgaaagtg
atgcCTTGGCCTTGATGACCAGCTGTTCGGTAAAGTACTTTCAAGTCATC
CATTAAGTTCGAAACGTTGTAGGATCTA
Run BLAST on NCBI

transcript from alignment at scaffold_23:92148..93182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053398 ID=TCONS_00053398|Name=TCONS_00053398|organism=Clytia hemisphaerica|type=transcript|length=1035bp|location=Sequence derived from alignment at scaffold_23:92148..93182+ (Clytia hemisphaerica)
ACTTACCGGCGAgaaacaaagaacaacgtgtaAATTGTTCTTGACACGTG
TGATAAAGTAATCATAAAGATTTTCATTGGTCGGTGGACGTCTTGGATAT
TCTTTTTTCATGACAGAAATTAAATCTTGCGTTATTTCATCAATCTCATC
CCTTTGGAATAGGTTGGATACctgaaaaatgtaaagaaaGTCAGAGTAgt
gcacgatttttttatttataagtatAACGTATATAAGCATAAACAGGCTA
ATATTTTGGCTTGAAAACAATATCTCGATTGTTATTAAGCAATAGAAATT
TAAGCATGTACCCGGCCTCGGCTCAAATGAACCATAagcttgagaaaaaa
aatcctttcatcggaacacccctgtctcatgtTCCTAATGTTAGGGCTAG
GCGAAACCGGTACATGGTATGGTGCGAGCGATAAGGGTCCCTATTTCATA
CCTCAAACGCCTCTCAAAAGgatataaaaacacaaaaaaggaTCAAAGTT
CTGCTAAGTGTCATAAGCTCGTTAAAAAAATtcgatcaaaactcaaaaaa
atagTCTTTTGGATTACAAATGCGTCAACAGTTCGAAAAACACCGAAATG
TAGGCTCTGTAACGGTAAATTTCCAAACCTTAGTGAGGagtgaaaaagaa
gaaatttctatATAGTTTATCAGGTTAACAAGCTGGACATTGGGATATAA
CTTATAGTTTAATGATATATGCTAACCCTTGGGATCCGTAGTACCTTTCG
TGGGACGCAACCGTATATGATTGGTTCGAAAggaattttaaactcttttg
aGCCCGCGAATTAGGCCTGGCAAAAGTTTTTAATGGCTAGAAGAGCAACT
CGGGGTTAGCCCCTAAAAAACAACATACCTCTCCTGATGCCAACACGTTG
TTCATGTATTCCAAGAAACCTTCATCTTTAATTTCGTtgtcagtgaaaat
gaaagtgatgcCTTGGCCTTGATGACCAGCTGTTCGGTAAAGTACTTTCA
AGTCATCCATTAAGTTCGAAACGTTGTAGGATCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033708XLOC_033708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053398-exon-scaffold_23-1491911889:92148..92314TCONS_00053398-exon-scaffold_23-1491911889:92148..92314Clytia hemisphaericaexon
TCONS_00053398-exon-scaffold_23-1510915933:92148..92314TCONS_00053398-exon-scaffold_23-1510915933:92148..92314Clytia hemisphaericaexon
TCONS_00053398-exon-scaffold_23-1575043694:92148..92314TCONS_00053398-exon-scaffold_23-1575043694:92148..92314Clytia hemisphaericaexon
TCONS_00053398-exon-scaffold_23-1491911889:93022..93182TCONS_00053398-exon-scaffold_23-1491911889:93022..93182Clytia hemisphaericaexon
TCONS_00053398-exon-scaffold_23-1510915933:93022..93182TCONS_00053398-exon-scaffold_23-1510915933:93022..93182Clytia hemisphaericaexon
TCONS_00053398-exon-scaffold_23-1575043694:93022..93182TCONS_00053398-exon-scaffold_23-1575043694:93022..93182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:92148..93182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.02766	0.477144	5.33802	45.7875	36.8701	21.3403	36.0131	8.24755	8.00246	2.74179	24.2428	0	0.477589	0.00269995	0.512769	0	0.94166	0	0	1.68679	2.7229	0.765072	1.64346	4.82416	1.60405	3.68171e-08	2.92639	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024317Dynein_heavy_chain_D4_dom
Blast
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BLAST of TCONS_00053398 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 1.645e-56
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = -2 
Query:    1 RSYNVSNLMDDLKVLYRTAGHQGQGITFIFTDNEIKDEGFLEYMNNVLASGEVSNLFQRDEIDEITQDLISVMKKEYPRRPPTNENLYDYFITRVKNNLHVVLCFSPVS 327
            RSYN SNLM+DLKVLYRTAG QG+GITFIFTDNEIKDE FLEYMNNVL+SGEVSNLF RDEIDEI  DL SVMKKE+PR  PTNENL+DYF++RV+ NLH+VLCFSPV 
Sbjct: 2984 RSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEVSNLFARDEIDEINSDLASVMKKEFPRCLPTNENLHDYFMSRVRQNLHIVLCFSPVG 3092
The following BLAST results are available for this feature:
BLAST of TCONS_00053398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH51.645e-5681.65Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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