TCONS_00053401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053401
Unique NameTCONS_00053401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length6728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053401 ID=TCONS_00053401|Name=TCONS_00053401|organism=Clytia hemisphaerica|type=transcript|length=6728bp
TAattattttagcaaaaaaaaagaagttgatattttaaagaaagtataaa
gtgaactgtattaaagaaaaaatttaaaacttacttttattaaaaacaaa
caaaaaagttattgaaaaacagaaaaatttataaattccaagaaaaagaa
tcattattattattttacaaACACCAAAAGTGAATAAATTTTCCTCCGTA
TATGTTCCCAAGGGGTTCTCAAGTTTGTTTGATTTGTATGTAGGTCGGac
aagtttagaaaaaattgGCTTACTAGCATCGTTTAGGGTTTTACTTTCAT
AAATATGGGGGGAGTAACTTGGATAGCCTTCAGATCATATCATTTTCTGG
TCCTCTATTTATAAAATCAGAAGTCACACTACAATTTGTTTATATTCTGA
CATGAAGAAGAGTCTGTTATTTGGAGACGATGAAAGTTTTATACCTCGTT
TAaacgcaaaaataaaaaaagaaccaTAAAGAAAAGATGGTGTATACAAG
TTTACTACGAATTCATAGACATTGTTAGGGAAAAAACACCTTGTAAGGAA
CGAACagtttgaaaatacaaaataaatccgaaaaaagaaaaaatcttaaa
atctaaaaacttaaaaaaatgtaacaaaatgtCATCAacattataaaaac
aataaaagttcataattgtctttttttatttcatatttattGATGTGAAG
AAAAGTTCTTCGACTCCAACACATTCTCGTGTTCATCAGAAATCATTACC
CAGTTCGTATCtgagctcatcatcatcatgaaATTTGCTCTTACAAATAC
GATGTTTGCGAATAATGAACACCAATATTGCAATTACTAGAACCAAAAGC
AAAGCAAGGACAATCACAGCAATACTGGAAGCTGACAGCTTTTTCGATTC
CTTGGATGAGCTAACCATATTGTAACACGTTTTACCTTCCCAGCCTTTGT
CACAGTAGCATGTGTCCTGATCAGTGGCGAAGCTGTGGACGCACGTTCCA
TGGTCGCTACATTTGACTTGAGCATTACATCTCATTAACTCTTCATGCTG
ACAATGTCCCCCTGTGTAACCATGCTGGCATTGACATATGGCATCATGAA
CAATGACGGAACCATtctgattcaaaatggtaccgTCAGTTGCGTACTCA
TCGTGAATAAGATCATTGTGGTAATTGTGTTCCGTGGACCCATCAATGCA
GGTAGCATTATTTGAACATGGATTATTCGTTTTGCAGATGTTGGTTGGAC
CGAGCTTCACTTCGCAATTTTTCCCATCAAAACCGTGTCGACAACGACAA
AAAGCTTGTACTTTTGGTGACCCTGCTAAAACTGTCTCGAAGCATTGACC
ACCATTTTGGCAATAGTTATCAATACAAAGGGTACATTTGCCAGTGTTTG
TTGTTCCATAACAAAATGGCATTGCTTCTTGACAATAAGTGCCAGTGAAA
GACGGCTTACACTTACATTTGAATTCATTCGTTGAGTTTTGGGTAGTTTG
ACACTCGCCACGAAAACTGCAGAGATGTTGCGAGCATTTAGTACATCCAA
GATGAGTGACCAATCCTTCGATATCATAGTGAGGAAGCTGTTGCAGTTCA
TGTGTTTCATTACCGGCGTTGCATTTACCAAGGACTTGGACAGAATGATG
AAAACTGTACTGTTCTAGGTATTGGATGACCCAGTCACAATCACAAGTCA
AATTGTTATTGGTGAAATCGATGGTAGGGTAGGTCAGCTTGTTCATATAT
TTAAAGAAATCAGGTGAAATTTCGTTGATGGTGTTATTCGAGAAATCTGC
ATGTTCTAAATATCGAAAATCTCTCATTTGAATTGGTATTTTCGTTAGCT
TGTTATTGTGTAAGAGAAGTTTCGACAATGAGTTTAAATATCTGAAAGTA
TCGGGTTCAATAGAGCTGATTTGGTTATAACTTAAATCCACGACTGACAG
atgggtcaatttttttagaTTAACTTTCTCCAACGACTCAATTTGGTTGT
GACTCAAAATCAAACTTTGCATATCGAACAAGAAATGAGAGTCCAGTAAA
CCTTCAATATTggcttttgaaagtttattatGTGATAAGTCAAGATTGGT
GACATCAATTCTTTGGAAATGCAACTTTGATTGTTCTTGTAGTTGATTGC
TGGATAGATTAAGTTCTCGGATGGTAATTGCATATGTAGTTACCAAGGAA
CTTAATTGGTTGTTGCTAAGGTCGATATGATCATAATTTGAAGAAGGGAT
CAGAAAATTAACGACTGCAATATTGTTGTTGGATAAATCTAAATATGAAG
CGGTGACGCTGATATTGAGTGTACTTGAGATTTTGTTGTTATTCAGAATA
AGGGAGTCGATATGGTTCCCTTTTAAGAAGGCGGCTGGAACGTTAACCAA
ACAGCTATGGCTCATAGTGATTTCTCGCATGGCAAGTTCTTCGAAACGTG
CACTGAAATTCATGACTTTGAGATCACAATTGTGGGAAAGATCTAATGAT
CGAGCATCCATTGTGGTGAGATCTAGTTCTTTGAGATTGGTATTACGAAG
GGTTAGAAAGTTGAGAAGACATGAGGAATCGGATGAAGCTTGGAATTTAG
TCAAAGGGTTAAAACTGAGATCAAGAGATTTTAGCTTTCGGCAATCGTCA
ACGATGAATTCTGTCAATTGGTTATGGCTTAGGTCTAAATATTCAATGTT
ACTATCAATGAAATTTGGTGACTCTGTAAGGTTATTATGGGATAGATGGA
CTTCTGATAAACTTGGAAGATCGGTAAAAGTAATGTTGGTTAGTTCATTT
CCAGTAGCATATAATTCAGTTAAACGTGGAAGGTGGCTTAGGTCGAGGGT
TGTGAATTGGTTATGACTGATGTCAAGTAATTGTAGGTTGGTACGTGCAA
ATGCCTTCATCTCGAGTGACGTAATCGCATTCCCGGTTAAATTGAGTTCC
TTTAgttgtgaaaaattattaaagttGAGTTGCTTCAGACTGCTTATACT
TGTGCCATGGATCGCGAAATATTGCAAAGGTGCTTTGATTAAATGTAGAT
CCTCAGTAATGGCTTTGACTGACTTATTTCCAAAGATTTCTAGATATTCA
AGGTTATTCATGCCCCAGAAAGTATGGTGATTGACAGCTGTAGAGATATA
GATGGATAAATGCCTCAGATTACGCGTTAAGGAGAACGGGTACGTTTCGT
AAACTTCAATTGGATTATCGTGAAGATACAAATCTTCCAATAATTGAAAT
TGATCGAAATCTGTTCGGTAGATTTTCTTAATCTGGTTACCGTCCAAATG
CAATACTTTAACACTTTTTGGAATGTCTTTTGGAACTGAGGTCAGGTTGG
CATGACTGCAATCGACAAATTCTTCTAGGTCATCGCAATGACATTGGCGA
GGGCATAATCGATACGAAGCCACTTGCTGCACCAATAAACATAAAACTAC
AAAATTCCACATGTTCGATTTAGAATTTTGTCTCAATCTTAATACACCAT
CCCACTTTGTACAAAAAACGAGTTTGACAGACGAATGGTGTTGATGAGTA
TGTGAAATACTTTTTTTCCTTTCCTACTTTCCGTCATTCGATCTAATTAA
TGAAAAAGCTCATTAAAAAAGTCATTAGTATTTTGTTGAATAAAGCAATT
TCAATTATATTGCATTTTTCTCATCAACTCCAGCCCACTGAACTGAAAAT
ATATAATAGAGTTTGCTATTGCCGTGTGCACTATACCGCGCCATTACGTA
AGCTTTGGGACAAAACACACATGTTTGCAATAGCTTGGATGCCTGTCAAA
CAAACTAACTTATTGACTCAATATTCCGATGTAAATTCTTCCTTTTGAag
catacacattttttataagaacatccaatatttttgaaaacttcggATGT
CCTTCTTaactttcaccattttgtgagcatttatgtccattttccttaaa
aattccTTAAAACTCGCCTGGTGAGGAGAAATTTGACCTATCTTGTGTGT
ACATGAAATCTGTACTATTAACTTTTTGTGTACAATGGTTGAATGAATAT
CCGTTCTAGGCGTTGTTTATGAGATCTGTGGCCAGACCACAGTAATTATA
CAAACTGACAGAAATCGAGTTGACGTTTGCAGAAAAGTCGAGACCTTTAC
CGAGAAAAAGGTGAACTTTTTTACACTTCCTTGATAATATGGAAAGGAAA
TAGCCTGTCACGTAACTTTCGAATAGAATTTGATCCATCAGTATTTTTGT
TATCGAGTACAAAATAGATGTTGCCGTGAAAAGTGACAAGTCTTACAGAA
AATTTCTAACTTTTGTGTGCTCCTCCTTACGAAGAAATGCTACCGAACCT
TTGCGAATTCTTTACAATCATTTAAAGTCATACAACTTGATGGAAATGTC
AAAAGttccttttcaaattttatttttgtcacCTAATAGAAGTTTGAATG
ACatctaaccaatcaaaatattcgaattgcacAACTATGAAATCgattag
tttttgaaaaaagtcgcAGGGCTTTTcttcgaagatttcttttttccctt
ttcGCGGGGTGATTAAAGCAGGGCTATTATGTATAATCACCCCGTACTCC
CTTTTAtttctaagctaaatgtaatcagcCATATGATTATGTCTAAAGTT
GTAAACATTAACCTGTAATGCCCTCCCTGCCAACTCATTCATACAAAAAA
TGTCAtagaaaaattgacgtcaaaatttgacgCCAAAAAGTGACGTTAAA
TATTATTTCActgttcaaaataaaaaaagaattatttgaaCTTTTTAATC
GATGGTATAATGTCTTGTTGTTGTGGTGTGCCATGGATTCGTCTATATAT
GgtcaaaagttaaaaatcatCTTCGTTCACCCCTCCCTCCCACAACCAAT
CAAACCACCCAATCGAAATCCTTCAGCTCCCAGATCTACACCTTCGCCCA
GTGCAAATAACAGTTCGCACGACCTTCAGCATAACTTGGAGAACATAGCT
GCAGTACCGATACACGGTGTCATCGATGGAGCATCTCCTTTCCACATCTC
ATTAGCTTCACACAAAGAACGTCTGATGCAGAACGCTTTCAGAGGTAGTA
AATTGACTGCTAGACGTGGACGAATTTTACCCATTCACAGTTGTCGGTGT
GACCCACCGAACGCCGCAATACGCCAACAACCCTCGGCAGTTCAAGTCAT
CAAATCTGATTCCTTTCAACCAAACGTCAGACGGATTGCTGTTAGTCCGA
CAAAACCACGTCATGGAGTTGGACCTCTGTCCTCAGATACGGCCAAAAAG
GGCCGTGAGCCAAAAAAGAAAGCCGTGATTGCCAAAAAAGCATCAGTAAC
GAAAGAGCGTAAAGCACTGCTCACGCCTATCAAATCTGATGAtgatattc
taaaggtggaaaACTCCAACAAAAAATCTCTTCAAAAACCAAAACCTGAA
ACCAATAAAAAGGAGAATATCAAGCCCACACTGTCGAAAGCAAACAAAAT
CGAAGTCGTTCCGACGATGACTGACGCATCAATGAATACAATTTTGACCG
ACATTTTACCTCAATACCGACGCCGTAAAAAAGACGTGAAAATATCCGAT
ATCATCGACACGTTAGACATGATTATTCATCCTAGTCCATCAGAAGATAT
CGTCAACATCTTGCCTAAGAACCAAGTGAAACGTGTAGATCTCAAAGTCT
GGAATAACCCACCTGTTCACCAGAGGTCTGTTGTACCATGTAAACAcgga
aaatgtaaaaaacctAAAATCTAAAGAAAGACTACAAAAAGGAACAAGAA
CATACTTTGAAGTTTCTATACTGTGACTGGTCAATagctttttaaacaaa
agacaACTCAGGCTCTAAggacacccctgtatcacaggcCTGATCGctGG
GAACAACAAGAATATACCCCCATtagaatttcaaacaaaaattcaaaaat
tttcatcacCAACAGGGGGAGACCTTTTCcaagggctgtgagacaggtgt
GTCTAAGAGTTCTAAAATCCAATCACTTCTGTCTTTTCTTGATTAATCTT
ACAGTGATAAGTTTAAGAAATTCTGGTAAGAAAATGACTAAAACTAGACC
ATCTACTGTCATGTTTAGGATATCTAAATAAATTTTCCTATAAACCAATC
TCTCATCGCTGAATTTAGCTGGGCAATGAATTTTTGTAACTATTGTAGAT
GAGGAGCTTGTGAAATTTCCGGCGGAACAAAAAGGTCAAGAAAAACTCAC
AAAATGAaagttcaattttcaaaaagataatatttctcataaaaaatatt
tataaaaacatctccacatataaaaacaacttttgaaTAGGTCCCTTtag
attttgctaaattttcgtttttgatcagtttaaaaaaaaacctacaCTTG
AGTTAAATATGTGTAAAAACAACAATTTCTCACTTACAGTCTGCCAACAA
TAAAACATGTCTTTAAGCACGAAATTTTGCGATTCTCTGCAAGTACAGTA
GAAGTTCGTCATTGGTTCGATAATCCTGGGACAATTTGTACCAATCTTTT
TCATCGTCTACAACCTCCATTTCGAAAAGGTAATCACAGAAACGAGACAC
AAACTCCATGTGCACCATTTCCCCTGTACGCAAACAAGAtcgggaaaaga
ttttttttacagATTATCGATATCCGTGAAATTTCAGTACTTAAAGCTAT
TTTTCCAATAGTTTGCTTGACGATCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_23:29285..36834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053401 ID=TCONS_00053401|Name=TCONS_00053401|organism=Clytia hemisphaerica|type=transcript|length=7550bp|location=Sequence derived from alignment at scaffold_23:29285..36834- (Clytia hemisphaerica)
TAATTATTTTAGCAAAAAAAAAGAAGTTGATATTTTAAAGAAAGTATAAA
GTGAACTGTATTAAAGAAAAAATTTAAAACTTACTTTTATTAAAAACAAA
CAAAAAAGTTATTGAAAAACAGAAAAATTTATAAATTCCAAGAAAAAGAA
TCATTATTATTATTTTACAAACACCAAAAGTGAATAAATTTTCCTCCGTA
TATGTTCCCAAGGGGTTCTCAAGTTTGTTTGATTTGTATGTAGGTCGGAC
AAGTTTAGAAAAAATTGGCTTACTAGCATCGTTTAGGGTTTTACTTTCAT
AAATATGGGGGGAGTAACTTGGATAGCCTTCAGATCATATCATTTTCTGG
TCCTCTATTTATAAAATCAGAAGTCACACTACAATTTGTTTATATTCTGA
CATGAAGAAGAGTCTGTTATTTGGAGACGATGAAAGTTTTATACCTCGTT
TAAACGCAAAAATAAAAAAAGAACCATAAAGAAAAGATGGTGTATACAAG
TTTACTACGAATTCATAGACATTGTTAGGGAAAAAACACCTTGTAAGGAA
CGAACAGTTTGAAAATACAAAATAAATCCGAAAAAAGAAAAAATCTTAAA
ATCTAAAAACTTAAAAAAATGTAACAAAATGTCATCAACATTATAAAAAC
AATAAAAGTTCATAATTGTCTTTTTTTATTTCATATTTATTGATGTGAAG
AAAAGTTCTTCGACTCCAACACATTCTCGTGTTCATCAGAAATCATTACC
CAGTTCGTATCTGAGCTCATCATCATCATGAAATTTGCTCTTACAAATAC
GATGTTTGCGAATAATGAACACCAATATTGCAATTACTAGAACCAAAAGC
AAAGCAAGGACAATCACAGCAATACTGGAAGCTGACAGCTTTTTCGATTC
CTTGGATGAGCTAACCATATTGTAACACGTTTTACCTTCCCAGCCTTTGT
CACAGTAGCATGTGTCCTGATCAGTGGCGAAGCTGTGGACGCACGTTCCA
TGGTCGCTACATTTGACTTGAGCATTACATCTCATTAACTCTTCATGCTG
ACAATGTCCCCCTGTGTAACCATGCTGGCATTGACATATGGCATCATGAA
CAATGACGGAACCATTCTGATTCAAAATGGTACCGTCAGTTGCGTACTCA
TCGTGAATAAGATCATTGTGGTAATTGTGTTCCGTGGACCCATCAATGCA
GGTAGCATTATTTGAACATGGATTATTCGTTTTGCAGATGTTGGTTGGAC
CGAGCTTCACTTCGCAATTTTTCCCATCAAAACCGTGTCGACAACGACAA
AAAGCTTGTACTTTTGGTGACCCTGCTAAAACTGTCTCGAAGCATTGACC
ACCATTTTGGCAATAGTTATCAATACAAAGGGTACATTTGCCAGTGTTTG
TTGTTCCATAACAAAATGGCATTGCTTCTTGACAATAAGTGCCAGTGAAA
GACGGCTTACACTTACATTTGAATTCATTCGTTGAGTTTTGGGTAGTTTG
ACACTCGCCACGAAAACTGCAGAGATGTTGCGAGCATTTAGTACATCCAA
GATGAGTGACCAATCCTTCGATATCATAGTGAGGAAGCTGTTGCAGTTCA
TGTGTTTCATTACCGGCGTTGCATTTACCAAGGACTTGGACAGAATGATG
AAAACTGTACTGTTCTAGGTATTGGATGACCCAGTCACAATCACAAGTCA
AATTGTTATTGGTGAAATCGATGGTAGGGTAGGTCAGCTTGTTCATATAT
TTAAAGAAATCAGGTGAAATTTCGTTGATGGTGTTATTCGAGAAATCTGC
ATGTTCTAAATATCGAAAATCTCTCATTTGAATTGGTATTTTCGTTAGCT
TGTTATTGTGTAAGAGAAGTTTCGACAATGAGTTTAAATATCTGAAAGTA
TCGGGTTCAATAGAGCTGATTTGGTTATAACTTAAATCCACGACTGACAG
ATGGGTCAATTTTTTTAGATTAACTTTCTCCAACGACTCAATTTGGTTGT
GACTCAAAATCAAACTTTGCATATCGAACAAGAAATGAGAGTCCAGTAAA
CCTTCAATATTGGCTTTTGAAAGTTTATTATGTGATAAGTCAAGATTGGT
GACATCAATTCTTTGGAAATGCAACTTTGATTGTTCTTGTAGTTGATTGC
TGGATAGATTAAGTTCTCGGATGGTAATTGCATATGTAGTTACCAAGGAA
CTTAATTGGTTGTTGCTAAGGTCGATATGATCATAATTTGAAGAAGGGAT
CAGAAAATTAACGACTGCAATATTGTTGTTGGATAAATCTAAATATGAAG
CGGTGACGCTGATATTGAGTGTACTTGAGATTTTGTTGTTATTCAGAATA
AGGGAGTCGATATGGTTCCCTTTTAAGAAGGCGGCTGGAACGTTAACCAA
ACAGCTATGGCTCATAGTGATTTCTCGCATGGCAAGTTCTTCGAAACGTG
CACTGAAATTCATGACTTTGAGATCACAATTGTGGGAAAGATCTAATGAT
CGAGCATCCATTGTGGTGAGATCTAGTTCTTTGAGATTGGTATTACGAAG
GGTTAGAAAGTTGAGAAGACATGAGGAATCGGATGAAGCTTGGAATTTAG
TCAAAGGGTTAAAACTGAGATCAAGAGATTTTAGCTTTCGGCAATCGTCA
ACGATGAATTCTGTCAATTGGTTATGGCTTAGGTCTAAATATTCAATGTT
ACTATCAATGAAATTTGGTGACTCTGTAAGGTTATTATGGGATAGATGGA
CTTCTGATAAACTTGGAAGATCGGTAAAAGTAATGTTGGTTAGTTCATTT
CCAGTAGCATATAATTCAGTTAAACGTGGAAGGTGGCTTAGGTCGAGGGT
TGTGAATTGGTTATGACTGATGTCAAGTAATTGTAGGTTGGTACGTGCAA
ATGCCTTCATCTCGAGTGACGTAATCGCATTCCCGGTTAAATTGAGTTCC
TTTAGTTGTGAAAAATTATTAAAGTTGAGTTGCTTCAGACTGCTTATACT
TGTGCCATGGATCGCGAAATATTGCAAAGGTGCTTTGATTAAATGTAGAT
CCTCAGTAATGGCTTTGACTGACTTATTTCCAAAGATTTCTAGATATTCA
AGGTTATTCATGCCCCAGAAAGTATGGTGATTGACAGCTGTAGAGATATA
GATGGATAAATGCCTCAGATTACGCGTTAAGGAGAACGGGTACGTTTCGT
AAACTTCAATTGGATTATCGTGAAGATACAAATCTTCCAATAATTGAAAT
TGATCGAAATCTGTTCGGTAGATTTTCTTAATCTGGTTACCGTCCAAATG
CAATACTTTAACACTTTTTGGAATGTCTTTTGGAACTGAGGTCAGGTTGG
CATGACTGCAATCGACAAATTCTTCTAGGTCATCGCAATGACATTGGCGA
GGGCATAATCGATACGAAGCCACTTGCTGCACCAATAAACATAAAACTAC
AAAATTCCACATGTTCGATTTAGAATTTTGTCTCAATCTTAATACACCAT
CCCACTTTGTACAAAAAACGAGTTTGACAGACGAATGGTGTTGATGAGTA
TGTGAAATACTTTTTTTCCTTTCCTACTTTCCGTCATTCGATCTAATTAA
TGAAAAAGCTCATTAAAAAAGTCATTAGTATTTTGTTGAATAAAGCAATT
TCAATTATATTGCATTTTTCTCATCAACTCCAGCCCACTGAACTGAAAAT
ATATAATAGAGTTTGCTATTGCCGTGTGCACTATACCGCGCCATTACGTA
AGCTTTGGGACAAAACACACATGTTTGCAATAGCTTGGATGCCTGTCAAA
CAAACTAACTTATTGACTCAATATTCCGATGTAAATTCTTCCTTTTGAAG
CATACACATTTTTTATAAGAACATCCAATATTTTTGAAAACTTCGGATGT
CCTTCTTAACTTTCACCATTTTGTGAGCATTTATGTCCATTTTCCTTAAA
AATTCCTTAAAACTCGCCTGGTGAGGAGAAATTTGACCTATCTTGTGTGT
ACATGAAATCTGTACTATTAACTTTTTGTGTACAATGGTTGAATGAATAT
CCGTTCTAGGCGTTGTTTATGAGATCTGTGGCCAGACCACAGTAATTATA
CAAACTGACAGAAATCGAGTTGACGTTTGCAGAAAAGTCGAGACCTTTAC
CGAGAAAAAGGTGAACTTTTTTACACTTCCTTGATAATATGGAAAGGAAA
TAGCCTGTCACGTAACTTTCGAATAGAATTTGATCCATCAGTATTTTTGT
TATCGAGTACAAAATAGATGTTGCCGTGAAAAGTGACAAGTCTTACAGAA
AATTTCTAACTTTTGTGTGCTCCTCCTTACGAAGAAATGCTACCGAACCT
TTGCGAATTCTTTACAATCATTTAAAGTCATACAACTTGATGGAAATGTC
AAAAGTTCCTTTTCAAATTTTATTTTTGTCACCTAATAGAAGTTTGAATG
ACATCTAACCAATCAAAATATTCGAATTGCACAACTATGAAATCGATTAG
TTTTTGAAAAAAGTCGCAGGGCTTTTCTTCGAAGATTTCTTTTTTCCCTT
TTCGCGGGGTGATTAAAGCAGGGCTATTATGTATAATCACCCCGTACTCC
CTTTTATTTCTAAGCTAAATGTAATCAGCCATATGATTATGTCTAAAGTT
GTAAACATTAACCTGTAATGCCCTCCCTGCCAACTCATTCATACAAAAAA
TGTCATAGAAAAATTGACGTCAAAATTTGACGCCAAAAAGTGACGTTAAA
TATTATTTCACTGTTCAAAATAAAAAAAGAATTATTTGAACTTTTTAATC
GATGGTATAATGTCTTGTTGTTGTGGTGTGCCATGGATTCGTCTATATAT
GGTCAAAAGTTAAAAATCATCTTCGTTCACCCCTCCCTCCCACAACCAAT
CAAACCACCCAATCGAAATCCTTCAGCTCCCAGATCTACACCTTCGCCCA
GGTATTAAATCTACATTCATCTCATTCTGTTTGTGATTGTTGAGGCATAC
ACGTTTTTTATAAGAAAACATTTATTGAATCCTTCGGATGCTCTTAACTT
TTTGACTTTTAAGCCCAAAAATGTTCTTAACATTTTATATAGTTTGTTCT
TATAAAAAAACGTGTACGAAAATTGCTATTGGAATATAATGATCTTATGA
TGTCAAACTAAATTTTGTTCTTTAGGTATTCTTTAAGTCCAGAAATCCGT
AATAAAAGCACAAGTTTTCACTGGATAAATAAAGNTGATTGTTGAGGCAT
ACACGTTTTTTATAAGAAAACATTTATTGAATCCTTCGGATGCTCTTAAC
TTTTTGACTTTTAAGCCCAAAAATGTTCTTAACATTTTATATAGTTTGTT
CTTATAAAAAAACGTGTACGAAAATTGCTATTGGAATATAATGATCTTAT
GATGTCAAACTAAATTTTGTTCTTTAGGTATTCTTTAAGTCCAGAAATCC
GTAATAAAAGCACAAGTTTTTTGGATAAATAAAACAGCTTTTGGGATGGG
TCTGGAGGAGTAACCATTGCAAATAATCAACCTTAACTTAATATATATCG
AAAAGTGCATATTAAATAGAACTATCATTTGAGTATATTCTTCACTATTC
TTAAGTTCGATTTTTAGAGAATTTGTTATTTTTTAGAGTTTAGTTTTTAA
AGTAACTTCTATTTTATCCTTTCAGTGCAAATAACAGTTCGCACGACCTT
CAGCATAACTTGGAGAACATAGCTGCAGTACCGATACACGGTGTCATCGA
TGGAGCATCTCCTTTCCACATCTCATTAGCTTCACACAAAGAACGTCTGA
TGCAGAACGCTTTCAGAGGTAGTAAATTGACTGCTAGACGTGGACGAATT
TTACCCATTCACAGTTGTCGGTGTGACCCACCGAACGCCGCAATACGCCA
ACAACCCTCGGCAGTTCAAGTCATCAAATCTGATTCCTTTCAACCAAACG
TCAGACGGATTGCTGTTAGTCCGACAAAACCACGTCATGGAGTTGGACCT
CTGTCCTCAGATACGGCCAAAAAGGGCCGTGAGCCAAAAAAGAAAGCCGT
GATTGCCAAAAAAGCATCAGTAACGAAAGAGCGTAAAGCACTGCTCACGC
CTATCAAATCTGATGATGATATTCTAAAGGTGGAAAACTCCAACAAAAAA
TCTCTTCAAAAACCAAAACCTGAAACCAATAAAAAGGAGAATATCAAGCC
CACACTGTCGAAAGCAAACAAAATCGAAGTCGTTCCGACGATGACTGACG
CATCAATGAATACAATTTTGACCGACATTTTACCTCAATACCGACGCCGT
AAAAAAGACGTGAAAATATCCGATATCATCGACACGTTAGACATGATTAT
TCATCCTAGTCCATCAGAAGATATCGTCAACATCTTGCCTAAGAACCAAG
TGAAACGTGTAGATCTCAAAGTCTGGAATAACCCACCTGTTCACCAGAGG
TCTGTTGTACCATGTAAACACGGAAAATGTAAAAAACCTAAAATCTAAAG
AAAGACTACAAAAAGGAACAAGAACATACTTTGAAGTTTCTATACTGTGA
CTGGTCAATAGCTTTTTAAACAAAAGACAACTCAGGCTCTAAGGACACCC
CTGTATCACAGGCCTGATCGGTCCCCCGCCCAGGAAGATTTGGCTAAAAT
TTAGTCCCCGTTTTAAAAAGTGACTTTGATTTCATGCACTCCAAAACCAT
CCCCACTGGATTTTTTAGCTGGGAACAACAAGAATATACCCCCATTAGAA
TTTCAAACAAAAATTCAAAAATTTTCATCACCAACAGGGGGAGACCTTTT
CCAAGGGCTGTGAGACAGGTGTGTCTAAGAGTTCTAAAATCCAATCACTT
CTGTCTTTTCTTGATTAATCTTACAGTGATAAGTTTAAGAAATTCTGGTA
AGAAAATGACTAAAACTAGACCATCTACTGTCATGTTTAGGATATCTAAA
TAAATTTTCCTATAAACCAATCTCTCATCGCTGAATTTAGCTGGGCAATG
AATTTTTGTAACTATTGTAGATGAGGAGCTTGTGAAATTTCCGGCGGAAC
AAAAAGGTCAAGAAAAACTCACAAAATGAAAGTTCAATTTTCAAAAAGAT
AATATTTCTCATAAAAAATATTTATAAAAACATCTCCACATATAAAAACA
ACTTTTGAATAGGTCCCTTTAGATTTTGCTAAATTTTCGTTTTTGATCAG
TTTAAAAAAAAACCTACACTTGAGTTAAATATGTGTAAAAACAACAATTT
CTCACTTACAGTCTGCCAACAATAAAACATGTCTTTAAGCACGAAATTTT
GCGATTCTCTGCAAGTACAGTAGAAGTTCGTCATTGGTTCGATAATCCTG
GGACAATTTGTACCAATCTTTTTCATCGTCTACAACCTCCATTTCGAAAA
GGTAATCACAGAAACGAGACACAAACTCCATGTGCACCATTTCCCCTGTA
CGCAAACAAGATCGGGAAAAGATTTTTTTTACAGATTATCGATATCCGTG
AAATTTCAGTACTTAAAGCTATTTTTCCAATAGTTTGCTTGACGATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033711XLOC_033711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053401-exon-scaffold_23-1575043694:31884..36834TCONS_00053401-exon-scaffold_23-1575043694:31884..36834Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1575043694:30215..31159TCONS_00053401-exon-scaffold_23-1575043694:30215..31159Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1575043694:29285..30116TCONS_00053401-exon-scaffold_23-1575043694:29285..30116Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1510915933:31884..36834TCONS_00053401-exon-scaffold_23-1510915933:31884..36834Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1510915933:30215..31159TCONS_00053401-exon-scaffold_23-1510915933:30215..31159Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1510915933:29285..30116TCONS_00053401-exon-scaffold_23-1510915933:29285..30116Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1491911889:31884..36834TCONS_00053401-exon-scaffold_23-1491911889:31884..36834Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1491911889:30215..31159TCONS_00053401-exon-scaffold_23-1491911889:30215..31159Clytia hemisphaericaexon
TCONS_00053401-exon-scaffold_23-1491911889:29285..30116TCONS_00053401-exon-scaffold_23-1491911889:29285..30116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:29285..36834 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.352414	0.293036	0.299915	0.276295	2.21373	1.22799	7.88804	10.1584	7.73469	9.28349	6.40549	6.22744	22.2626	15.0852	8.91719	15.6723	1.92642	2.65308	10.5592	16.6074	0.360592	0.349662	0.974194	0.914537	1.21172	1.40187	1.09665	1.02345	0.695443	0.76134
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000372LRRNT
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR025875Leu-rich_rpt_4
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00053401 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.267e-16
Identity = 108/417 (25.90%), Postives = 161/417 (38.61%), Query Frame = -3 
Query:  925 DVTNLDLSHNKLSKANIEGLLDSHFLFDMQSLILSHNQIESLEKVNLKKLTHLSVVDLSYNQISSIEPDTFRYXXXXXXXXXXXXXLTKIPIQMRDFRYLEHADFSNNTINEISPDFFKYMNKLTYPTIDFTNNNLTCDCD--WVIQYLEQYSFHHSVQVLGKCNAG----------NETHELQQLPHYDIEGLVTHLGCTKCSQHLCSFRGECQTTQNSTNEFKCKCKPSFTGTYCQEAMPFCYGTTNTGKCTLCIDNYCQNGGQCFETVLAGSPKVQAFCRCRHGFDGKNCEVKLGPTNICKTNNPCSNNATCIDGSTEH------NYHNDL---IHDEYATDGTILNQNGSVIVHDA--ICQCQHGYTGGHCQHEELMRCNAQVKCSDHGTCVHSFATDQDTCYCDKGWEGKTC 2106
            DVT L L  N L+    E     H       + LS+N I  L       ++HLS + LSYN++  I    F                      +R  R L       N I+ +    F  +  L++  +    N L CDC   W+ ++++     +    + +C++             TH  Q     DI  +     C  C    C   G C  TQ+    ++C C  S+ G  C   +       NT     CI N CQ+GG C    L+ S K    C C  GF+G+ CE+     + C+ N+ C NNATC+DG   +      NY  +L   + D    +  +       I  D    C+C  GY+G  C+ +    C A  KC     CV +   +  TC C +G+ G  C
Sbjct:  753 DVTELYLEGNHLTAVPRELSALRHLTL----IDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFN--------------------GLRSLRVLT---LHGNDISSVPEGSFNDLTSLSH--LALGTNPLHCDCSLRWLSEWVKA---GYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAK---CNACLSSPCKNNGTC--TQDPVELYRCACPYSYKGKDCTVPI-------NT-----CIQNPCQHGGTCH---LSDSHKDGFSCSCPLGFEGQRCEIN---PDDCEDND-CENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDN-DDCVAH-KCRHGAQCVDTI--NGYTCTCPQGFSGPFC 1109
The following BLAST results are available for this feature:
BLAST of TCONS_00053401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT37.267e-1625.90Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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