|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053407 ID=TCONS_00053407|Name=TCONS_00053407|organism=Clytia hemisphaerica|type=transcript|length=2620bp
atCCAAGCATAGCTCTGTAGCTatggaaaaaaacaaattgaaaaatcact
TTCGAAATCCTTAGCGACTTCTTTAGTATCACCTTGTTATTTAGTATCCA
TGAATCATTCTAATAATTGTTAATTCGAGAGCCCCTAGGTGAATTCCCTA
TGGAGAATTACACCTATATTTATAAATCTGtaccgggtgtctctgaaaaa
actaccccctgtttgattcaaaattgcgaaaaagtgaaaaaatatattag
cttgattttttcgaaatcgtttagaggagggTTTGTCTTAAATTAGCTGC
AGCTAATGAAAAATTTAGCTCTTTGCTGTCAATACTGAAAAGAAAGTATA
TTTCTGACTGTTTCCATTATTGAGAACTCAGCCTTTAAAATTTCTTGGTA
GGGTCAGCCACATGACCAGTAAGCCACATTTTTTGCCCACATTTCATTTG
CTTGTAACTCACCTTTAAGTAAGCCACAGAAATTAGCCCTTTATGCAATG
GATAGCTAATTTCCTCAGCTTAACAACCAAAGCAATCCTAAGTGTAAGCC
ACATAATTTTCCCAAGTTATGGTCAATTTAGTGGTTGACATTAAAAATGT
GACAAAACAGGGgtttatttttgattgggatCTGAGTGGAGAAGAGAAAG
TTTGAGTGTCtattttttctaacaaaagATTTGAATACCCtgttttcttg
tcttttttgcgctctttttgaaaacaatttttttactctttttgtcataa
cgtttgatctaatgaagcaattttaaagtttgatataccaaaatttaagt
taaatcctcctctaaacgatttcgaaaaaatcaagctaatatgttttttc
actttttcgcaattttgaatcaaacagggggaagttttttcagagacacc
cggtaTAAACATTAAGTAGAtgtgaaaaagtaaaaatgattaataattcA
CACCGTAAAGAGAAAGGTAAAGTACCTTTGTGATTCCCCTTTTATATCTA
TCTATAAAAACTAAAGACAGTGAAAAATATATTCACATTACATGTTTTAA
GTTAAAAGAACCAGGAGGAACAAATggatataaaaacaaaaatcttaATC
CTACAGGAAAAgttattattttcatcaaaatacttGGACACGTTCCAAAG
ATAGGGTCACCATGACCCGTAAATGAAAAGTTTTAGTTCATGATGGACcc
ataaataaatataaaagatAATGTATTCAAGAAGAACAGAAGCACGATTA
ACATGAAGAACTGACTAGAGTTTATAGCTTTGGGTACGGTAGAGGCTCAC
TGATTGCTTCTTCAGGGTTTGGCATCCCTGCCCAACGAACCGAGCTGATT
TTTTCTTTGTACGTGGCTTTTCATAGAAAGAATGATCAGAGAGAGAGTCA
ATTATCTCCCACAATAAAGAGaaCATCGAAACATTTGATGGGATCCTATT
GTTTGTCACCCTGGTCATTAGTTGATACTAGACCATAAGCTGTGAAGGAA
GGACGAACAAAAATGAAAGAACGGATGGATTGCATCAAATGCCTTATTAA
ATAATGCCCATATTGGTAAAGTTCACAGGAAGAAAGAATGGTGTATATTG
TAAACAAACCCAAAGTACACCTTGTCTATGCATAGTCCAATGATCTTAGA
TGACAGCTTCCTTCTAACCGAGAAGAAAGCAAGATTTGTGAGATCATGCC
AAAGTCAGGGCAAATTCTTTTCCCCAAAATGATACATTATTCAATCAATG
TCACCAAAAGTAAACAGCTTTCACTGGAAAAGATTTTGCCCTGAAGCTGG
AAAAGAAAGACACTGGATATGCCACATATTGTTATAATAACTATCACAAT
AATATTATCATAATAAGTTTTAAATCTATTAACAATAAGTGTGTACTCTT
TTCGACTTTCGTGTGGAAGCCATGTTAGTGGAATAattcccttgagagtg
gttcCATGTGGTCGATTTTGATTATGATTCAAATTTCTTTCACACAATAA
TTtgtattttagtttttaagcaaaatccttATTTTACATGAGTTTTAAAT
ATGTTTTAGTTTTATAAAAGCACAGTTTTAAATATCCAGAAATTAAATTA
CATTTCACTAATCATTCCCAAAAGTGACCCTAAAGAGACCCAATTTCTTT
CAAGTTCTAAATTCTCATTATACAACAAACTTTTCTAAAGGTGAGGTTTC
TGTAAAAATGTTTCCATCATTCTATTTAGTACAGAACACTAATTCCATTT
TGTTTATATCCAGGTTGCCTGTTGTAAGCTTTCCATATTCACATCCAGTA
TGACACATTTCAAAAATTAACGAGGTTGACTAGTAGGGTAAAGTAACCTG
ATTGAGATACAACCTCCTTGCATGAAACTCTTTTGAAAAAGAGGTTTTTC
TTAAttgtcaaaaacttttgttAGCACAAAGTGTAGCTAGCAGAGAGATG
TCCTACCcttttcctttacaaatctatCTACGCCTTTGTCCCTTTTATGA
ACCTTGTGTTTTCACAAAATGAGCCTATCCCCTAAAAGTTTATCATAGAA
ATGTATCAAAGATAGAAAGAATTTCACTGACCAGagatagaaataaaact
tttgaaaatatagaACTAAA Run BLAST on NCBI transcript from alignment at scaffold_23:170286..173170- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053407 ID=TCONS_00053407|Name=TCONS_00053407|organism=Clytia hemisphaerica|type=transcript|length=2885bp|location=Sequence derived from alignment at scaffold_23:170286..173170- (Clytia hemisphaerica)
ATCCAAGCATAGCTCTGTAGCTATGGAAAAAAACAAATTGAAAAATCACT
TTCGAAATCCTTAGCGACTTCTTTAGTATCACCTTGTTATTTAGTATCCA
TGAATCATTCTAATAATTGTTAATTCGAGAGCCCCTAGGTGAATTCCCTA
TGGAGAATTACACCTATATTTATAAATCTGTACCGGGTGTCTCTGAAAAA
ACTACCCCCTGTTTGATTCAAAATTGCGAAAAAGTGAAAAAATATATTAG
CTTGATTTTTTCGAAATCGTTTAGAGGAGGGTTTGTCTTAAATTAGCTGC
AGCTAATGAAAAATTTAGCTCTTTGCTGTCAATACTGAAAAGAAAGTATA
TTTCTGACTGTTTCCATTATTGAGAACTCAGCCTTTAAAATTTCTTGGTA
GGGTCAGCCACATGACCAGTAAGCCACATTTTTTGCCCACATTTCATTTG
CTTGTAACTCACCTTTAAGTAAGCCACAGAAATTAGCCCTTTATGCAATG
GATAGCTAATTTCCTCAGCTTAACAACCAAAGCAATCCTAAGTGTAAGCC
ACATAATTTTCCCAAGTTATGGTCAATTTAGTGGTTGACATTAAAAATGT
GACAAAACAGGGGTTTATTTTTGATTGGGATCTGAGTGGAGAAGAGAAAG
TTTGAGTGTCTATTTTTTCTAACAAAAGATTTGAATACCCTGTTTTCTTG
TCTTTTTTGCGCTCTTTTTGAAAACAATTTTTTTACTCTTTTTGTCATAA
CGTTTGATCTAATGAAGCAATTTTAAAGTTTGATATACCAAAATTTAAGT
TAAATCCTCCTCTAAACGATTTCGAAAAAATCAAGCTAATATGTTTTTTC
ACTTTTTCGCAATTTTGAATCAAACAGGGGGAAGTTTTTTCAGAGACACC
CGGTATAAACATTAAGTAGATGTGAAAAAGTAAAAATGATTAATAATTCA
CACCGTAAAGAGAAAGGTAAAGTACCTTTGTGATTCCCCTTTTATATCTA
TCTATAAAAACTAAAGACAGTGAAAAATATATTCACATTACATGTTTTAA
GTTAAAAGAACCAGGAGGAACAAATGGATATAAAAACAAAAATCTTAATC
CTACAGGAAAAGTTATTATTTTCATCAAAATACTTGGACACGTTCCAAAG
ATAGGGTCACCATGACCCGTAAATGAAAAGTTTTAGTTCATGATGGACCC
ATAAATAAATATAAAAGATAATGTATTCAAGAAGAACAGAAGCACGATTA
ACATGAAGAACTGACTAGAGTTTATAGCTTTGGGTACGGTAGAGGCTCAC
TGATTGCTTCTTCAGGGTTTGGCATCCCTGCCCAACGAACCGAGCTGATT
TTTTCTTTGTACGTGGCTTTTCATAGAAAGAATGATCAGAGAGAGAGTCA
ATTATCTCCCACAATAAAGAGGTATGCAATACCCTTTAAAGGCTTCTTTT
TACAGAGTTTAATACTCATATTTATATACTCTATTGTATTGTATCAGAAA
AGCTATTTTCATACTCTTATAATCTCCTTTAAAATTCATCCAGATCAGTC
TGTTTATATATAATTTAACATCTGAATAAATTAGTGAAAAAAATTCAAAG
ATAGAAAAAAATAGCAACATATCCATAAGTATCTTTTAAAAAATATATTT
ATCAAGTTTTATTTAAACTTTTCTTTTTTTTTGCAGAACATCGAAACATT
TGATGGGATCCTATTGTTTGTCACCCTGGTCATTAGTTGATACTAGACCA
TAAGCTGTGAAGGAAGGACGAACAAAAATGAAAGAACGGATGGATTGCAT
CAAATGCCTTATTAAATAATGCCCATATTGGTAAAGTTCACAGGAAGAAA
GAATGGTGTATATTGTAAACAAACCCAAAGTACACCTTGTCTATGCATAG
TCCAATGATCTTAGATGACAGCTTCCTTCTAACCGAGAAGAAAGCAAGAT
TTGTGAGATCATGCCAAAGTCAGGGCAAATTCTTTTCCCCAAAATGATAC
ATTATTCAATCAATGTCACCAAAAGTAAACAGCTTTCACTGGAAAAGATT
TTGCCCTGAAGCTGGAAAAGAAAGACACTGGATATGCCACATATTGTTAT
AATAACTATCACAATAATATTATCATAATAAGTTTTAAATCTATTAACAA
TAAGTGTGTACTCTTTTCGACTTTCGTGTGGAAGCCATGTTAGTGGAATA
ATTCCCTTGAGAGTGGTTCCATGTGGTCGATTTTGATTATGATTCAAATT
TCTTTCACACAATAATTTGTATTTTAGTTTTTAAGCAAAATCCTTATTTT
ACATGAGTTTTAAATATGTTTTAGTTTTATAAAAGCACAGTTTTAAATAT
CCAGAAATTAAATTACATTTCACTAATCATTCCCAAAAGTGACCCTAAAG
AGACCCAATTTCTTTCAAGTTCTAAATTCTCATTATACAACAAACTTTTC
TAAAGGTGAGGTTTCTGTAAAAATGTTTCCATCATTCTATTTAGTACAGA
ACACTAATTCCATTTTGTTTATATCCAGGTTGCCTGTTGTAAGCTTTCCA
TATTCACATCCAGTATGACACATTTCAAAAATTAACGAGGTTGACTAGTA
GGGTAAAGTAACCTGATTGAGATACAACCTCCTTGCATGAAACTCTTTTG
AAAAAGAGGTTTTTCTTAATTGTCAAAAACTTTTGTTAGCACAAAGTGTA
GCTAGCAGAGAGATGTCCTACCCTTTTCCTTTACAAATCTATCTACGCCT
TTGTCCCTTTTATGAACCTTGTGTTTTCACAAAATGAGCCTATCCCCTAA
AAGTTTATCATAGAAATGTATCAAAGATAGAAAGAATTTCACTGACCAGA
GATAGAAATAAAACTTTTGAAAATATAGAACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053407-exon-scaffold_23-1575043694:171750..173170 | TCONS_00053407-exon-scaffold_23-1575043694:171750..173170 | Clytia hemisphaerica | exon |
| TCONS_00053407-exon-scaffold_23-1575043694:170286..171484 | TCONS_00053407-exon-scaffold_23-1575043694:170286..171484 | Clytia hemisphaerica | exon |
| TCONS_00053407-exon-scaffold_23-1510915933:171750..173170 | TCONS_00053407-exon-scaffold_23-1510915933:171750..173170 | Clytia hemisphaerica | exon |
| TCONS_00053407-exon-scaffold_23-1510915933:170286..171484 | TCONS_00053407-exon-scaffold_23-1510915933:170286..171484 | Clytia hemisphaerica | exon |
| TCONS_00053407-exon-scaffold_23-1491911889:171750..173170 | TCONS_00053407-exon-scaffold_23-1491911889:171750..173170 | Clytia hemisphaerica | exon |
| TCONS_00053407-exon-scaffold_23-1491911889:170286..171484 | TCONS_00053407-exon-scaffold_23-1491911889:170286..171484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:170286..173170 - |
Blast
The following BLAST results are available for this feature:
|
