TCONS_00053421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053421
Unique NameTCONS_00053421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053421 ID=TCONS_00053421|Name=TCONS_00053421|organism=Clytia hemisphaerica|type=transcript|length=648bp
CGATACGTTTACAGTTGTAACAAGTTATTTCATCCATCCTTCTGTATTTA
CTGTCTTTAGGCTTGTTTTCTTGTTCCATTTTGGCCTTTATCTGCTCAGC
AATTTTACGAGTTTTACGAGCGTCCTTTAAATGCTTTTCCTGAATGTCTC
CAGACGAAACCAAAATATTCCTTTTATAATGTTTAAGCACTAGCCAGCCC
TCCCTGTCAGCGATTTGTAAGTGTTGCAACCTTTCTTCTAAAAGTTTCTT
ACCTTTAGTCAGGAAGTTTTTTGCAACATCAAAATCTTTCTCTTCCAATG
CCTCCAAATTGTCGTCCACATTCTCTAATACTTGAGTGGTGTGCTGGAAC
TGTTCCTCGTGTCCTTTCTTATTGAAATGAATTTGGTCATAGCTTCTCTT
CTTGTCTAATcttgttttcagtttttcaataGCTTTAGATTGATCTTGTT
TGAACTCTTCATTCATATATTGTCGGACAGCGTCCTTTATCGCTTGATTT
TCTTTCTTAGTTCAAGGCGTATGCAAGAGCGAGGATTGACAAGCTGACAA
GCAGCTTCTTTAAAGCATATTGCGCATGCGCAGTTTGTTCCAATCTCCGC
AAGATGGTAGATTTTCGTACGAAAAACGCGGAGAAGCTCGATTTCCAC
Run BLAST on NCBI

protein sequence of TCONS_00053421-protein

>TCONS_00053421-protein ID=TCONS_00053421-protein|Name=TCONS_00053421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MNEEFKQDQSKAIEKLKTRLDKKRSYDQIHFNKKGHEEQFQHTTQVLENV
DDNLEALEEKDFDVAKNFLTKGKKLLEERLQHLQIADREGWLVLKHYKRN
ILVSSGDIQEKHLKDARKTRKIAEQIKAKMEQENKPKDSKYRRMDEITCY
NCKRI
Run BLAST on NCBI

transcript from alignment at scaffold_230:63073..63720

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053421 ID=TCONS_00053421|Name=TCONS_00053421|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at scaffold_230:63073..63720 (Clytia hemisphaerica)
GTGGAAATCGAGCTTCTCCGCGTTTTTCGTACGAAAATCTACCATCTTGC
GGAGATTGGAACAAACTGCGCATGCGCAATATGCTTTAAAGAAGCTGCTT
GTCAGCTTGTCAATCCTCGCTCTTGCATACGCCTTGAACTAAGAAAGAAA
ATCAAGCGATAAAGGACGCTGTCCGACAATATATGAATGAAGAGTTCAAA
CAAGATCAATCTAAAGCtattgaaaaactgaaaacaagATTAGACAAGAA
GAGAAGCTATGACCAAATTCATTTCAATAAGAAAGGACACGAGGAACAGT
TCCAGCACACCACTCAAGTATTAGAGAATGTGGACGACAATTTGGAGGCA
TTGGAAGAGAAAGATTTTGATGTTGCAAAAAACTTCCTGACTAAAGGTAA
GAAACTTTTAGAAGAAAGGTTGCAACACTTACAAATCGCTGACAGGGAGG
GCTGGCTAGTGCTTAAACATTATAAAAGGAATATTTTGGTTTCGTCTGGA
GACATTCAGGAAAAGCATTTAAAGGACGCTCGTAAAACTCGTAAAATTGC
TGAGCAGATAAAGGCCAAAATGGAACAAGAAAACAAGCCTAAAGACAGTA
AATACAGAAGGATGGATGAAATAACTTGTTACAACTGTAAACGTATCG

Coding sequence (CDS) from alignment at scaffold_230:63073..63720

>TCONS_00053421 ID=TCONS_00053421|Name=TCONS_00053421|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_230:63073..63720 (Clytia hemisphaerica)
ATGAATGAAGAGTTCAAACAAGATCAATCTAAAGCtattgaaaaactgaa
aacaagATTAGACAAGAAGAGAAGCTATGACCAAATTCATTTCAATAAGA
AAGGACACGAGGAACAGTTCCAGCACACCACTCAAGTATTAGAGAATGTG
GACGACAATTTGGAGGCATTGGAAGAGAAAGATTTTGATGTTGCAAAAAA
CTTCCTGACTAAAGGTAAGAAACTTTTAGAAGAAAGGTTGCAACACTTAC
AAATCGCTGACAGGGAGGGCTGGCTAGTGCTTAAACATTATAAAAGGAAT
ATTTTGGTTTCGTCTGGAGACATTCAGGAAAAGCATTTAAAGGACGCTCG
TAAAACTCGTAAAATTGCTGAGCAGATAAAGGCCAAAATGGAACAAGAAA
ACAAGCCTAAAGACAGTAAATACAGAAGGATGGATGAAATAACTTGTTAC
AACTGTAAACGTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033728XLOC_033728Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053421-proteinTCONS_00053421-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053421-exon-scaffold_230-1491911889:63073..63720TCONS_00053421-exon-scaffold_230-1491911889:63073..63720Clytia hemisphaericaexon
TCONS_00053421-exon-scaffold_230-1510915933:63073..63720TCONS_00053421-exon-scaffold_230-1510915933:63073..63720Clytia hemisphaericaexon
TCONS_00053421-exon-scaffold_230-1575043694:63073..63720TCONS_00053421-exon-scaffold_230-1575043694:63073..63720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_230supercontigscaffold_230:63073..63720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.21678	5.12905	6.29299	3.8441	0.653901	0.458566	1.1429	1.36178	1.86871	1.51838	0.491258	1.30632	0.224232	0.781442	0.714927	0.344724	1.69869	1.11928	0.610141	0.629276	0.890237	0.804947	1.27741	2.85876	0.173535	0.154876	0.721912	0.473052	1.34829	0.962163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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