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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053442 ID=TCONS_00053442|Name=TCONS_00053442|organism=Clytia hemisphaerica|type=transcript|length=4122bp
tgaaaagatgaaccagctcaatagcgacagccatttgtttcaatgtgggt
cgagaattttccggtgccgtggtcagtgctaaatcgcgttttcaccttga
cgttgaaaaacatgaatatctttggaaagaaaatagataccttgATGCAG
ttctttttacttgtttccctgataattcctgattgatttaaaaaaaagaa
tgaacacgtttggatgatttaaaggtaagtactaatgccttgaagttcat
tttcgtaaattcttcctcgttccgcgcaaaaaatcccgacgagtgagCAC
CCTAACAAAATGGCCGTCAGAGTTGGGCGggcatcacaaataacttgtct
TGTGTTTGCATCGTTTTTAGGTCTAAAAAACGagtcggttggtcggtcgg
caaaaaaaaatgtcggaaaaatggattttcaaacCATGAGTCGGGCGAAA
ATCAAATCTATCGGAAATTTGAAAAGCTACGCTAGAGTCACACCGAAAAA
CAAATCACTTTTATAAACTTACCTTCccaaaacattgaagaagcctatAC
TAATCAAAGTAAATGAGAGAAGAGaggaaaaaaccttaaaatcaaccaga
atttacaagatttttttccaaagcaaaaagacatctgccgccatcttgaa
tttaaaatgagaatTATATTCAGCCCCAGTTCacacaataattttttcat
ccaattaGATATCGCCAAAAATTCAACTACATATTCTGTACGTGTCAAAG
ACCTTGACGAATACCTGATACCACTCGAAAACGTCATCAGATTCCACTTG
ATTCCTGCCTTCTGCGATGGAAGACAATGCAATGATACTGAACGTCGCTT
GATGGCTTTGCCGACAAAATTCAGGGGACTTGGTATCATAAATGTAATAG
AAGAAGCGAAATTCCAACACGAAACGAGTCTAAGTGTGACAGCCGAATTA
CGAGATTGTGTCGTAAAACAATGTGAAGAGCCCGTTGATTATACCAGTTT
AATTTcgataatcaaaacaaaaaagaaccaATTTTCATGCGGTACGGTTG
GCAGATGAGGAGACTCCGGTCAAATGTGCATGTCAAGCATCCTTCTCCAT
CGAACATGCACTTTCTTGTCACCTTGGTGGTTACGTCATTCATCGTCACA
ACAACATCCGTGATTCATTGGCGATGATGTTGAAAGAAGTTGCACATGAT
GTGAAAATTGAACCCGCATTATTGGAACTCACAAGAACTGATAGTGctga
ttttaaaaaatcagcTATGTGGTAATGAGGCAAGGGCCGATGTTAGTGGT
AACGGTTTTTGGACACAGTTTCAGAGAGCATTCTTTGATGTTAAGGTTTC
AAACCTTCTAGCTCTGAGTTATCGTGAAAAATCCGTTTCAACTACATTAG
CAAGCTTTGAGAAGCAGAAGAAAAGAGCTTATAACCAACGAATCCAAGAA
ATTGAGAGAGGGACTTTCACACCATTGATTTTTGGTGCTACTGGCGGAAC
TTCACGCGAATGCTCGATATTTTTAAATAGACTTTCTGAGAAAATCTCAG
AGAAGCAAAATTGCATGAAGAGTGTCGTGATCGCCAGGATTTTACGCAAG
ATTTCCTTCATCTTGATCCGATCAGTTGTTGCTTGTCTGAGAGGTGAACG
TGCGAGTCACACATTTACCCCGGACCAAGTAGCACTGAAAGATCAAAAGC
TGAACGAAGTCTTGTCGTCTTTCCGTGAGTGAGGTTGTGAGGTgtgatat
ttaaaaaatattttcatttttgtttattcatttaaaaaacattAACTTTT
GTTAAAAGACCCGTGCCGGGACTGGCTCCGGTAATAGTATATACTTTATA
GCAAATTTgttctaaaaaataaatactgTAATTAGATCGTgcgatttcac
tttcactttctctagtccaataagacacgCGATTTGACTCACGTGACTCA
AATCGTcgtgtcttattggactagagaaagcgaaagtgacataaattcaa
gatggcggcaagAAAAGTGGTATCTCTAATTGAAAAACCACGAGGGAGAA
TTAAAATGAataatacagggggtcacacaaGCAAAGGATTAAGGCTAATG
TTTTAGgcttttctgaaggacaaaaggtataggaaggtTCACTAAAAGTG
GGATAAAGCTGGGACTAAATTATACTTATAAAAATCCGACGTTTTTCCGA
CTTTCCGACtcaaaaaagttggaaaattaggaaaaatcaTCAGCCGGTCG
GACAACgggaacacaagttatttgtgatgccCGCCTTGTCAGAAAGTATA
GAAGTTTgtcgaaaaaaagtgttttcataacaaaactgactttttatttt
ttaataattggaataaaagagagcactaaatgaagacattctattgcaaa
ataactctttttgcacaaatcaaatgtttttgctccggcctaggagcctt
taattctctcttccgacaagaAGAAGGGTCAagacatttatttttgttta
caaattccgattttccgattttcctGCTCGCAGTATCGGGATTGTGTTCG
CTGCGCGCGTTCCGCTACAATATTgcatcagccacattttatCTCCCTAA
TAACACGCCACTCTGCGCAACTTTTACCGAAAAACTGAGTGAAAAAACAT
AGAGTTTGAATTAGCTACCTAATAGTTGGCCAGTACTGCATAGTGTTTCG
TGTTGACATCTTGGCTCGTGGCTTGTTGGTGTTGCAGTTCGCTTGTACTT
TCTTCCAAACTATTGGGTAAGACAGTAAAGAGCCTCCTAAATCTGTTTTA
GTTCCTTGAATATTATTCATTCCAAAAACGAAACGATAGCAGCAAGTGTA
CACTGGTTAATCTACCTCACTTGCAAGTTATCCAAAAGATAGCATTAAGC
TTGTCTGTGATATATATCAGACAAGCAGCTACACCCTTGAGGTTGCATGC
GAGCTCCTTGCATCCTCTTACTTATCTTACTTAACCTACGAAGCTTACTT
AACCTACTGAACTACTTGTCAAACTTGAATAACCTGCAAAACCTACCAAA
CGCTCAAAACCTACCAAACGTTCAAAACGTGCGAAACCTGCTAATTGTTC
AAAACTTGCAAAGTCCATCAAACACTTGCTTCCTTTACTTCACACATCCT
AATCTCAGCTTACATATCTCAGCATTTAAGCTTATAAATCTCAGCTTCTC
AGCTTACACGTCTCAGCGTCAGATCTACTTAGCCTTATTAACTTATACTC
CCTGCAAAACAGAACTCTTATTTCTCcagtcaaatttgaaaaatatgttg
cGTGCGCAAacttatcaaattttgaaagctgtttTGGGCTCATTTAATCA
AGCCAACGAAGAATTATTTGGCCAAACTGCTGGCACTCAATGTAGTGTTA
ACTGCCTGTATGCTATCTTTTGGTCTAATTTTCGAAGCATTAATCTTTGG
AAGACTACCGACCTTGACAAAATCTTAATTGAAGGTGATAAGCTATACAA
ACAGCTTGATACAAACTCCCATCTTTCGGTTGATGAAATGCCGCGTTTCA
TTGAATCAAATGGTGTCATaactaatttcaattttttgaattttacaaaC
GGCGAAGCGAACCTGATTAATGATAGTCCTTTCCTTCAAATCCCTCTGAG
TGAATCCGAAAGTCTAGAATTCAACGCCTTAATGATCATTAACGGTTTTA
CTATCGCAATTATGAGTCGGCCTCAGGGTTACTTTATCTTTGACTCGCAT
AGTAGAAATGAAATTGGATTACTTGATCCCTCAAATGGAAAGTCATGTCT
ATTAAagtttgataatatttttgaacttgaaaaatatatccaatgttttt
atttagtAGAAATGGGAAATGAGAGTGCTCACTTTGAAATCCAATTTGTT
CAAATATGTAGTTTGAGAGATGAGCTGAAAAATATACTGCAGCAAGACTT
TTCcgcatttttgagaaattgtaCCCGCAAAAGGAAAAACAATAGTGGTG
ATGAAAATCATACTAAAcaggggggggtcttgcagttactccttgacact
atgtggagtaactgcaattttggacattttctacagacaccaccaccctt
gcagttattccatagtgtacta Run BLAST on NCBI protein sequence of TCONS_00053442-protein >TCONS_00053442-protein ID=TCONS_00053442-protein|Name=TCONS_00053442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MRAPCILLLILLNLRSLLNLLNYLSNLNNLQNLPNAQNLPNVQNVRNLLI
VQNLQSPSNTCFLYFTHPNLSLHISAFKLINLSFSAYTSQRQIYLALLTY
TPCKTELLFLQSNLKNMLRAQTYQILKAVLGSFNQANEELFGQTAGTQCS
VNCLYAIFWSNFRSINLWKTTDLDKILIEGDKLYKQLDTNSHLSVDEMPR
FIESNGVITNFNFLNFTNGEANLINDSPFLQIPLSESESLEFNALMIING
FTIAIMSRPQGYFIFDSHSRNEIGLLDPSNGKSCLLKFDNIFELEKYIQC
FYLVEMGNESAHFEIQFVQICSLRDELKNILQQDFSAFLRNCTRKRKNNS
GDENHTKQGGVLQLLLDTMWSNCNFGHFLQTPPPLQLFHSVL Run BLAST on NCBI transcript from alignment at scaffold_231:307364..311608+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053442 ID=TCONS_00053442|Name=TCONS_00053442|organism=Clytia hemisphaerica|type=transcript|length=4245bp|location=Sequence derived from alignment at scaffold_231:307364..311608+ (Clytia hemisphaerica)
tgaaaagatgaaccagctcaatagcgacagccatttgtttcaatgtgggt
cgagaattttccggtgccgtggtcagtgctaaatcgcgttttcaccttga
cgttgaaaaacatgaatatctttggaaagaaaatagataccttgATGCAG
ttctttttacttgtttccctgataattcctgattgatttaaaaaaaagaa
tgaacacgtttggatgatttaaaggtaagtactaatgccttgaagttcat
tttcgtaaattcttcctcgttccgcgcaaaaaatcccgacgagtgagCAC
CCTAACAAAATGGCCGTCAGAGTTGGGCGggcatcacaaataacttgtct
TGTGTTTGCATCGTTTTTAGGTCTAAAAAACGagtcggttggtcggtcgg
caaaaaaaaatgtcggaaaaatggattttcaaacCATGAGTCGGGCGAAA
ATCAAATCTATCGGAAATTTGAAAAGCTACGCTAGAGTCACACCGAAAAA
CAAATCACTTTTATAAACTTACCTTCccaaaacattgaagaagcctatAC
TAATCAAAGTAAATGAGAGAAGAGaggaaaaaaccttaaaatcaaccaga
atttacaagatttttttccaaagcaaaaagacatctgccgccatcttgaa
tttaaaatgagaatTATATTCAGCCCCAGTTCacacaataattttttcat
ccaattaGATATCGCCAAAAATTCAACTACATATTCTGTACGTGTCAAAG
ACCTTGACGAATACCTGATACCACTCGAAAACGTCATCAGATTCCACTTG
ATTCCTGCCTTCTGCGATGGAAGACAATGCAATGATACTGAACGTCGCTT
GATGGCTTTGCCGACAAAATTCAGGGGACTTGGTATCATAAATGTAATAG
AAGAAGCGAAATTCCAACACGAAACGAGTCTAAGTGTGACAGCCGAATTA
CGAGATTGTGTCGTAAAACAATGTGAAGAGCCCGTTGATTATACCAGTTT
AATTTcgataatcaaaacaaaaaagaaccaATTTTCATGCGGTACGGTTG
GCAGATGAGGAGACTCCGGTCAAATGTGCATGTCAAGCATCCTTCTCCAT
CGAACATGCACTTTCTTGTCACCTTGGTGGTTACGTCATTCATCGTCACA
ACAACATCCGTGATTCATTGGCGATGATGTTGAAAGAAGTTGCACATGAT
GTGAAAATTGAACCCGCATTATTGGAACTCACAAGAACTGATAGTGctga
ttttaaaaaatcagcTATGTGGTAATGAGGCAAGGGCCGATGTTAGTGGT
AACGGTTTTTGGACACAGTTTCAGAGAGCATTCTTTGATGTTAAGGTTTC
AAACCTTCTAGCTCTGAGTTATCGTGAAAAATCCGTTTCAACTACATTAG
CAAGCTTTGAGAAGCAGAAGAAAAGAGCTTATAACCAACGAATCCAAGAA
ATTGAGAGAGGGACTTTCACACCATTGATTTTTGGTGCTACTGGCGGAAC
TTCACGCGAATGCTCGATATTTTTAAATAGACTTTCTGAGAAAATCTCAG
AGAAGCAAAATTGCATGAAGAGTGTCGTGATCGCCAGGATTTTACGCAAG
ATTTCCTTCATCTTGATCCGATCAGTTGTTGCTTGTCTGAGAGGTGAACG
TGCGAGTCACACATTTACCCCGGACCAAGTAGCACTGAAAGATCAAAAGC
TGAACGAAGTCTTGTCGTCTTTCCGTGAGTGAGGTTGTGAGGTgtgatat
ttaaaaaatattttcatttttgtttattcatttaaaaaacattAACTTTT
GTTAAAAGACCCGTGCCGGGACTGGCTCCGGTAATAGTATATACTTTATA
GCAAATTTgttctaaaaaataaatactgTAATTAGATCGTgcgatttcac
tttcactttctctagtccaataagacacgCGATTTGACTCACGTGACTCA
AATCGTcgtgtcttattggactagagaaagcgaaagtgacataaattcaa
gatggcggcaagAAAAGTGGTATCTCTAATTGAAAAACCACGAGGGAGAA
TTAAAATGAataatacagggggtcacacaaGCAAAGGATTAAGGCTAATG
TTTTAGgcttttctgaaggacaaaaggtataggaaggtTCACTAAAAGTG
GGATAAAGCTGGGACTAAATTATACTTATAAAAATCCGACGTTTTTCCGA
CTTTCCGACtcaaaaaagttggaaaattaggaaaaatcaTCAGCCGGTCG
GACAACgggaacacaagttatttgtgatgccCGCCTTGTCAGAAAGTATA
GAAGTTTgtcgaaaaaaagtgttttcataacaaaactgactttttatttt
ttaataattggaataaaagagagcactaaatgaagacattctattgcaaa
ataactctttttgcacaaatcaaatgtttttgctccggcctaggagcctt
taattctctcttccgacaagaAGAAGGGTCAagacatttatttttgttta
caaattccgattttccgattttcctGCTCGCAGTATCGGGATTGTGTTCG
CTGCGCGCGTTCCGCTACAATATTgcatcagccacattttatCTCCCTAA
TAACACGCCACTCTGCGCAACTTTTACCGAAAAACTGAGTGAAAAAACAT
AGAGTTTGAATTAGCTACCTAATAGTTGGCCAGTACTGCATAGTGTTTCG
TGTTGACATCTTGGCTCGTGGCTTGTTGGTGTTGCAGTTCGCTTGTACTT
TCTTCCAAACTATTGGGTAAGACAGTAAAGAGCCTCCTAAATCTGTTTTA
GTTCCTTGAATATTATTCATTCCAAAAACGAAACGATAGCAGCAAGTGTA
CACTGGTTAATTAACCTCACTTGTTAGTTATCAATAAAAGATAGCATAAG
CTTGTCTGTGTTATATATCAGACAAGCAGCTACACCCTGGGAGGTTGCAT
GCGNAAAGATAGCAGCAAGTGTACACTGGTACATCTACCTCACTTGCAAG
TTATCCAAAAGATAGCATTAAGCTTGTCTGTGATATATATCAGACAAGCA
GCTACACCCTTGAGGTTGCATGCGAGCTCCTTGCATCCTCTTACTTATCT
TACTTAACCTACGAAGCTTACTTAACCTACTGAACTACTTGTCAAACTTG
AATAACCTGCAAAACCTACCAAACGCTCAAAACCTACCAAACGTTCAAAA
CGTGCGAAACCTGCTAATTGTTCAAAACTTGCAAAGTCCATCAAACACTT
GCTTCCTTTACTTCACACATCCTAATCTCAGCTTACATATCTCAGCATTT
AAGCTTATAAATCTCAGCTTCTCAGCTTACACGTCTCAGCGTCAGATCTA
CTTAGCCTTATTAACTTATACTCCCTGCAAAACAGAACTCTTATTTCTCc
agtcaaatttgaaaaatatgttgcGTGCGCAAacttatcaaattttgaaa
gctgtttTGGGCTCATTTAATCAAGCCAACGAAGAATTATTTGGCCAAAC
TGCTGGCACTCAATGTAGTGTTAACTGCCTGTATGCTATCTTTTGGTCTA
ATTTTCGAAGCATTAATCTTTGGAAGACTACCGACCTTGACAAAATCTTA
ATTGAAGGTGATAAGCTATACAAACAGCTTGATACAAACTCCCATCTTTC
GGTTGATGAAATGCCGCGTTTCATTGAATCAAATGGTGTCATaactaatt
tcaattttttgaattttacaaaCGGCGAAGCGAACCTGATTAATGATAGT
CCTTTCCTTCAAATCCCTCTGAGTGAATCCGAAAGTCTAGAATTCAACGC
CTTAATGATCATTAACGGTTTTACTATCGCAATTATGAGTCGGCCTCAGG
GTTACTTTATCTTTGACTCGCATAGTAGAAATGAAATTGGATTACTTGAT
CCCTCAAATGGAAAGTCATGTCTATTAAagtttgataatatttttgaact
tgaaaaatatatccaatgtttttatttagtAGAAATGGGAAATGAGAGTG
CTCACTTTGAAATCCAATTTGTTCAAATATGTAGTTTGAGAGATGAGCTG
AAAAATATACTGCAGCAAGACTTTTCcgcatttttgagaaattgtaCCCG
CAAAAGGAAAAACAATAGTGGTGATGAAAATCATACTAAAcagggggggg
tcttgcagttactccttgacactatgtggagtaactgcaattttggacat
tttctacagacaccaccacccttgcagttattccatagtgtacta Coding sequence (CDS) from alignment at scaffold_231:307364..311608+ >TCONS_00053442 ID=TCONS_00053442|Name=TCONS_00053442|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_231:307364..311608+ (Clytia hemisphaerica)
ATGCGAGCTCCTTGCATCCTCTTACTTATCTTACTTAACCTACGAAGCTT
ACTTAACCTACTGAACTACTTGTCAAACTTGAATAACCTGCAAAACCTAC
CAAACGCTCAAAACCTACCAAACGTTCAAAACGTGCGAAACCTGCTAATT
GTTCAAAACTTGCAAAGTCCATCAAACACTTGCTTCCTTTACTTCACACA
TCCTAATCTCAGCTTACATATCTCAGCATTTAAGCTTATAAATCTCAGCT
TCTCAGCTTACACGTCTCAGCGTCAGATCTACTTAGCCTTATTAACTTAT
ACTCCCTGCAAAACAGAACTCTTATTTCTCcagtcaaatttgaaaaatat
gttgcGTGCGCAAacttatcaaattttgaaagctgtttTGGGCTCATTTA
ATCAAGCCAACGAAGAATTATTTGGCCAAACTGCTGGCACTCAATGTAGT
GTTAACTGCCTGTATGCTATCTTTTGGTCTAATTTTCGAAGCATTAATCT
TTGGAAGACTACCGACCTTGACAAAATCTTAATTGAAGGTGATAAGCTAT
ACAAACAGCTTGATACAAACTCCCATCTTTCGGTTGATGAAATGCCGCGT
TTCATTGAATCAAATGGTGTCATaactaatttcaattttttgaattttac
aaaCGGCGAAGCGAACCTGATTAATGATAGTCCTTTCCTTCAAATCCCTC
TGAGTGAATCCGAAAGTCTAGAATTCAACGCCTTAATGATCATTAACGGT
TTTACTATCGCAATTATGAGTCGGCCTCAGGGTTACTTTATCTTTGACTC
GCATAGTAGAAATGAAATTGGATTACTTGATCCCTCAAATGGAAAGTCAT
GTCTATTAAagtttgataatatttttgaacttgaaaaatatatccaatgt
ttttatttagtAGAAATGGGAAATGAGAGTGCTCACTTTGAAATCCAATT
TGTTCAAATATGTAGTTTGAGAGATGAGCTGAAAAATATACTGCAGCAAG
ACTTTTCcgcatttttgagaaattgtaCCCGCAAAAGGAAAAACAATAGT
GGTGATGAAAATCATACTAAAcaggggggggtcttgcagttactccttga
cactatgtggagtaactgcaattttggacattttctacagacaccaccac
ccttgcagttattccatagtgtacta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053442-exon-scaffold_231-1491911889:307364..310222 | TCONS_00053442-exon-scaffold_231-1491911889:307364..310222 | Clytia hemisphaerica | exon |
| TCONS_00053442-exon-scaffold_231-1510915933:307364..310222 | TCONS_00053442-exon-scaffold_231-1510915933:307364..310222 | Clytia hemisphaerica | exon |
| TCONS_00053442-exon-scaffold_231-1575043694:307364..310222 | TCONS_00053442-exon-scaffold_231-1575043694:307364..310222 | Clytia hemisphaerica | exon |
| TCONS_00053442-exon-scaffold_231-1491911889:310346..311608 | TCONS_00053442-exon-scaffold_231-1491911889:310346..311608 | Clytia hemisphaerica | exon |
| TCONS_00053442-exon-scaffold_231-1510915933:310346..311608 | TCONS_00053442-exon-scaffold_231-1510915933:310346..311608 | Clytia hemisphaerica | exon |
| TCONS_00053442-exon-scaffold_231-1575043694:310346..311608 | TCONS_00053442-exon-scaffold_231-1575043694:310346..311608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:307364..311608 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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