TCONS_00053515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053515
Unique NameTCONS_00053515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053515 ID=TCONS_00053515|Name=TCONS_00053515|organism=Clytia hemisphaerica|type=transcript|length=857bp
GTTCAGTCTGTGGCAAAATGTAATTTTCTATGTATTTCTCTATTACACTT
TCATCAACTCAAGACCAAACATTTGCCATTCTATGGTGCATCATGGCAAC
TCTACTTTTggtgaaagatttttgaagacTGATGCAATTtatgttgtttt
gttttattaaaatataGATAGTAGAAATGGCAACTGCTGCAGGTCTTTTG
TCAGACTTCAAAAGTTTAACAGAACAAGCTATCAGTGCAGCTGATGAGTT
CAGCCAAATCTATTATAAACTTTACGATACTCAGCGACACAGATTGATTC
AGTTGTACAATGACAGATCAACAGTTGTTTGGAATGGAAATGCTGTTAAT
GGAACACAGGCCATCAATGAATTCTTCATAAATCTCCCTGCAACAGAaca
ccaaatattttcaatggATAGTCAGCCGATAAATAAGATTGCAACTCAAG
GACAGACAGCAATTTTAGTGACTTTTGATGGACAAGTGAAATTCGAAAAT
GAAAGGGATTACCAATATTTTACACAGACACTATTATTGATGAGTGTGAA
TAACACTTGGAAAATTATAAATGACTGTCTGAGATTTATAGACAGTTAAT
GTTTAGTGTTAttctatttttgttattttttaaagttttaattataacca
tatcaaaatatttgatttaaatAGAAATGATCTTTGgtcaatttcaaaca
aaaactgtTTTCCAGTTTAGTTTTTTgttcaattcaaaacaaaatttatc
gGCATAAAATTATACCCAAGAGAAACTCAAGTTTAATTGGTCTTTTTAGC
TTCCTCTGaagtaaataaatttaaatagGACAACATTTTAAGCACATTAT
AACTCAC
Run BLAST on NCBI

protein sequence of TCONS_00053515-protein

>TCONS_00053515-protein ID=TCONS_00053515-protein|Name=TCONS_00053515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MATAAGLLSDFKSLTEQAISAADEFSQIYYKLYDTQRHRLIQLYNDRSTV
VWNGNAVNGTQAINEFFINLPATEHQIFSMDSQPINKIATQGQTAILVTF
DGQVKFENERDYQYFTQTLLLMSVNNTWKIINDCLRFIDS
Run BLAST on NCBI

transcript from alignment at scaffold_232:55887..56743

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053515 ID=TCONS_00053515|Name=TCONS_00053515|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at scaffold_232:55887..56743 (Clytia hemisphaerica)
GTGAGTTATAATGTGCTTAAAATGTTGTCctatttaaatttatttacttC
AGAGGAAGCTAAAAAGACCAATTAAACTTGAGTTTCTCTTGGGTATAATT
TTATGCcgataaattttgttttgaattgaacAAAAAACTAAACTGGAAAa
cagtttttgtttgaaattgacCAAAGATCATTTCTatttaaatcaaatat
tttgatatggttataattaaaactttaaaaaataacaaaaatagaaTAAC
ACTAAACATTAACTGTCTATAAATCTCAGACAGTCATTTATAATTTTCCA
AGTGTTATTCACACTCATCAATAATAGTGTCTGTGTAAAATATTGGTAAT
CCCTTTCATTTTCGAATTTCACTTGTCCATCAAAAGTCACTAAAATTGCT
GTCTGTCCTTGAGTTGCAATCTTATTTATCGGCTGACTATccattgaaaa
tatttggtgtTCTGTTGCAGGGAGATTTATGAAGAATTCATTGATGGCCT
GTGTTCCATTAACAGCATTTCCATTCCAAACAACTGTTGATCTGTCATTG
TACAACTGAATCAATCTGTGTCGCTGAGTATCGTAAAGTTTATAATAGAT
TTGGCTGAACTCATCAGCTGCACTGATAGCTTGTTCTGTTAAACTTTTGA
AGTCTGACAAAAGACCTGCAGCAGTTGCCATTTCTACTATCtatatttta
ataaaacaaaacaacataAATTGCATCAgtcttcaaaaatctttcaccAA
AAGTAGAGTTGCCATGATGCACCATAGAATGGCAAATGTTTGGTCTTGAG
TTGATGAAAGTGTAATAGAGAAATACATAGAAAATTACATTTTGCCACAG
ACTGAAC

Coding sequence (CDS) from alignment at scaffold_232:55887..56743

>TCONS_00053515 ID=TCONS_00053515|Name=TCONS_00053515|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_232:55887..56743 (Clytia hemisphaerica)
TTAACTGTCTATAAATCTCAGACAGTCATTTATAATTTTCCAAGTGTTAT
TCACACTCATCAATAATAGTGTCTGTGTAAAATATTGGTAATCCCTTTCA
TTTTCGAATTTCACTTGTCCATCAAAAGTCACTAAAATTGCTGTCTGTCC
TTGAGTTGCAATCTTATTTATCGGCTGACTATccattgaaaatatttggt
gtTCTGTTGCAGGGAGATTTATGAAGAATTCATTGATGGCCTGTGTTCCA
TTAACAGCATTTCCATTCCAAACAACTGTTGATCTGTCATTGTACAACTG
AATCAATCTGTGTCGCTGAGTATCGTAAAGTTTATAATAGATTTGGCTGA
ACTCATCAGCTGCACTGATAGCTTGTTCTGTTAAACTTTTGAAGTCTGAC
AAAAGACCTGCAGCAGTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033783XLOC_033783Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053515-proteinTCONS_00053515-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053515-exon-scaffold_232-1491911889:55887..56743TCONS_00053515-exon-scaffold_232-1491911889:55887..56743Clytia hemisphaericaexon
TCONS_00053515-exon-scaffold_232-1510915933:55887..56743TCONS_00053515-exon-scaffold_232-1510915933:55887..56743Clytia hemisphaericaexon
TCONS_00053515-exon-scaffold_232-1575043694:55887..56743TCONS_00053515-exon-scaffold_232-1575043694:55887..56743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_232supercontigscaffold_232:55887..56743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.8437	7.95503	3.47146	3.88146	16.9077	9.45169	8.93944	9.95053	11.5341	10.2294	9.37421	10.9753	8.30199	6.42846	11.0054	7.2731	10.645	10.995	5.9364	5.17668	8.25786	8.13325	23.2895	22.1437	16.3415	13.745	5.70552	4.56681	9.54054	11.8253
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002075NTF2
IPR018222Nuclear_transport_factor_2_euk
IPR032710NTF2-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
Blast
[Close]
BLAST of TCONS_00053515 vs. Swiss-Prot (Human)
Match: NXT2 (NTF2-related export protein 2 OS=Homo sapiens GN=NXT2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.114e-35
Identity = 63/134 (47.01%), Postives = 89/134 (66.42%), Query Frame = 3 
Query:  204 DFKSLTEQAISAADEFSQIYYKLYDTQRHRLIQLYNDRSTVVWNGNAVNGTQAINEFFINLPATEHQIFSMDSQPINKIATQGQTAILVTFDGQVKFENERDYQYFTQTLLLMS---VNNT-WKIINDCLRFID 593
            DFK+  +QA  AA+EF  IYY+  D +R  L +LY D++T++WNGNAV+G  A+N FF  LP++E Q+  +D QP+++ ATQ QT +LV   G VKF+  + + +F Q  LL +    NNT WKI +DC RF D
Sbjct:    6 DFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQH-FFNQNFLLTAQSTPNNTVWKIASDCFRFQD 138
The following BLAST results are available for this feature:
BLAST of TCONS_00053515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NXT27.114e-3547.01NTF2-related export protein 2 OS=Homo sapiens GN=N... [more]
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