TCONS_00053696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053696
Unique NameTCONS_00053696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053696 ID=TCONS_00053696|Name=TCONS_00053696|organism=Clytia hemisphaerica|type=transcript|length=328bp
AATACAGATTCAAGTGTTCACTATGTATTACAATTACACCATTCAATTTT
TGTTGCAATTTATATGAACAAAACCGTCAAAGTCTTCAATGCCACATCAG
ATGGaaacattgttttaaaaagattcaGACCTCCGGAATCCTTTGATTGG
ATTGTCACAGTACCATTCAGCTTATCGAAACATTTAAAAAAGTATCATCT
TGTTGCCAAAGAAAACCTGACCAATAAATTCACGTTGATTGATCTAAAAA
CAGGCGATATAGTGCTCAGTTATCAGTCAACTACAGAAAACCATGgaaTT
AAAAGAATTACCTCCAGTGGAATCTCCA
Run BLAST on NCBI

protein sequence of TCONS_00053696-protein

>TCONS_00053696-protein ID=TCONS_00053696-protein|Name=TCONS_00053696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
NTDSSVHYVLQLHHSIFVAIYMNKTVKVFNATSDGNIVLKRFRPPESFDW
IVTVPFSLSKHLKKYHLVAKENLTNKFTLIDLKTGDIVLSYQSTTENHGI
KRITSSGIS
Run BLAST on NCBI

transcript from alignment at scaffold_233:1083835..1084384-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053696 ID=TCONS_00053696|Name=TCONS_00053696|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at scaffold_233:1083835..1084384- (Clytia hemisphaerica)
AATACAGATTCAAGTGTTCACTATGTATTACAATTACACCATTCAATTTT
TGTTGCAATTTATATGAACAAAACCGTCAAAGTCTTCAATGCCACATCAG
ATGGAAACATTGTTTTAAAAAGATTCAGACCTCCGGAATCCTTTGATTGG
ATTGTCACAGTACCATTCAGCTTATCGAAACATTTAAAAAAGTATCATCT
TGTTGCCAAAGAAAACCTGACCAATAAATTCACGTTGATTGATCTAAAAA
CAGGCGATATAGTGCTCAGTTATCAGTCAACTACAGAAAACCATGGTACA
CTTTATCTTAACTGGAATATGCATGAAGCAGCATTAGTATGCTGAGTTTT
TAGAGGTCAAAACCATTGGATTTCATGATATCAGTTTGAAACACTTTGCA
AGGTTAACTTGTCTCCAGTCATTCAGTAAAGATCATTTGAATACTCAACT
TTCAATGTCAATACAAGACTATCTAAGGAATTAAGGAATTAAAGGAATTT
TATATTTTATTTTTAAGGAATTAAAAGAATTACCTCCAGTGGAATCTCCA

Coding sequence (CDS) from alignment at scaffold_233:1083835..1084384-

>TCONS_00053696 ID=TCONS_00053696|Name=TCONS_00053696|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_233:1083835..1084384- (Clytia hemisphaerica)
GAATTAAAAGAATTACCTCCAGTGGAATCTCCAATACAGATTCAAGTGTT
CACTATGTATTACAATTACACCATTCAATTTTTGTTGCAATTTATATGAA
CAAAACCGTCAAAGTCTTCAATGCCACATCAGATGGAAACATTGTTTTAA
AAAGATTCAGACCTCCGGAATCCTTTGATTGGATTGTCACAGTACCATTC
AGCTTATCGAAACATTTAAAAAAGTATCATCTTGTTGCCAAAGAAAACCT
GACCAATAAATTCACGTTGATTGATCTAAAAACAGGCGATATAGTGCTCA
GTTATCAGTCAACTACAGAAAACCATGGAATTAAAAGAATTACCTCCAGT
GGAATCTCCAATACAGATTCAAGTGTTCACTATGTATTACAATTACACCA
TTCAATTTTTGTTGCAATTTATATGAACAAAACCGTCAAAGTCTTCAATG
CCACATCAGATGGAAACATTGTTTTAAAAAGATTCAGACCTCCGGAATCC
TTTGATTGGATTGTCACAGTACCATTCAGCTTATCGAAACATTTAAAAAA
GTATCATCTTGTTGCCAAAGAAAACCTGACCAATAAATTCACGTTGATTG
ATCTAAAAACAGGCGATATAGTGCTCAGTTATCAGTCAACTACAGAAAAC
CATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033864XLOC_033864Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053696-proteinTCONS_00053696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053696-exon-scaffold_233-1575043694:1084090..1084384TCONS_00053696-exon-scaffold_233-1575043694:1084090..1084384Clytia hemisphaericaexon
TCONS_00053696-exon-scaffold_233-1575043694:1083835..1083867TCONS_00053696-exon-scaffold_233-1575043694:1083835..1083867Clytia hemisphaericaexon
TCONS_00053696-exon-scaffold_233-1510915933:1084090..1084384TCONS_00053696-exon-scaffold_233-1510915933:1084090..1084384Clytia hemisphaericaexon
TCONS_00053696-exon-scaffold_233-1510915933:1083835..1083867TCONS_00053696-exon-scaffold_233-1510915933:1083835..1083867Clytia hemisphaericaexon
TCONS_00053696-exon-scaffold_233-1491911889:1084090..1084384TCONS_00053696-exon-scaffold_233-1491911889:1084090..1084384Clytia hemisphaericaexon
TCONS_00053696-exon-scaffold_233-1491911889:1083835..1083867TCONS_00053696-exon-scaffold_233-1491911889:1083835..1083867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1083835..1084384 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.546279	0	1.06819	4.64226	4.5381	4.23329	5.96022	1.51271	1.68935	4.1972	0.627382	0.51406	0	5.50491	3.93308	0.229756	3.53148	3.89972	0.918028	4.25158	1.01268	2.90501	2.66813	1.31774	2.50129	2.01104	0.467294	0.0744714	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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