|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053767 ID=TCONS_00053767|Name=TCONS_00053767|organism=Clytia hemisphaerica|type=transcript|length=1228bp
GTTCCTCCATGTAAAACGTTGAACGATGAGGCCTTTAGGTGTTTTTATAA
AGAGTTCTGTTGCGTCGATGATGGAATGAAGATTTAAAATTGGTTTAAAA
ACAGGTGGCTTAGTTACATTAAGTGTACCTTGATCAAGAATAAAACAAAT
GACTTTAAAATTGAGGATGTGACTTTCAACCAGGTTTGAACGATGCGACT
GGTGGTTGTCAATGAAACTTTAAAACGGTTAGCCAAATGCTTCTCCAATA
AAGCAAGTCTCAACTTCATCAACAACATTAAAAATTCATCTTTTCCACGC
AATTTTCGTTCAGAAACCATTCtctttggaatttttgaaaatttgcgcTT
TAAAATGGTCGAAGTAAATTTAAATCCAACCCATCTGCGTTTAacaaatg
aaatggaaaaataaagtcaaaaagtttattAAAAGTGAAAACCTCCTCAA
TCCCAATGTAAAAAGATAAGTTTTATCATctttaattgtaatttcatgCA
TTGGTAATTTGCAAATGcaatttttcttcagtttcTGATTTTCGAGCCGT
AAAACCTTGCAATTTGAACGATATCTTGTCAGCAGCAGCTCCTTGTTGTG
AAGATCATTTTTGAGTTTATTAATTTCTCtcaaagcagcaaaatattTAG
ATTTAAGTATCCAACCAAAACAAAGTAAGCTAGCTACAGTGACCATGCAA
GAAAAAACATATTACGGTACGTACCATGacggaaaacaaagaaagaaggG
AGAAAAAGACATTGACGGTTTGCATTATTAATTATGGGTTCACTATTAGG
AGATTCATCACGTGTAGATGGAGTGTGTCCAGGTGAAACATCAAAATCAA
TAGCTAATGAATCATTAACAACAGGGTTTAGGACATCAATAGGGTCTGGA
ACAACGATAGACTCATGAACAGCAACAGTGTCTGGAACAACAGCATcatc
atcattattattataGTTAGACGTCTTCTagtagttttgtttttatttct
caTATAGGGTGAGGGGTTGGGTTTTGTGGACATACCGTCAGGAAAATGGA
CAGAACACACTCTCGACTGTTTGTGCCTGCTAGGTGAccacaacaaattt
ttatttttttttatttttaatcagtTCTCACCAAATCATTCGTGCTTCCG
GATTTTCTCTCTCAGTGGGAAATGTGAACAACCTgtggagaaaaaattgg
atttttgataTTCAATTAACCAATCAAG Run BLAST on NCBI protein sequence of TCONS_00053767-protein >TCONS_00053767-protein ID=TCONS_00053767-protein|Name=TCONS_00053767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MVTVASLLCFGWILKSKYFAALREINKLKNDLHNKELLLTRYRSNCKVLR
LENQKLKKNCICKLPMHEITIKDDKTYLFTLGLRRFSLLINFLTLFFHFI
C Run BLAST on NCBI transcript from alignment at scaffold_233:1150561..1151788 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053767 ID=TCONS_00053767|Name=TCONS_00053767|organism=Clytia hemisphaerica|type=transcript|length=1228bp|location=Sequence derived from alignment at scaffold_233:1150561..1151788 (Clytia hemisphaerica)
CTTGATTGGTTAATTGAAtatcaaaaatccaattttttctccacAGGTTG
TTCACATTTCCCACTGAGAGAGAAAATCCGGAAGCACGAATGATTTGGTG
AGAactgattaaaaataaaaaaaaataaaaatttgttgtggTCACCTAGC
AGGCACAAACAGTCGAGAGTGTGTTCTGTCCATTTTCCTGACGGTATGTC
CACAAAACCCAACCCCTCACCCTATAtgagaaataaaaacaaaactactA
GAAGACGTCTAACtataataataatgatgatgATGCTGTTGTTCCAGACA
CTGTTGCTGTTCATGAGTCTATCGTTGTTCCAGACCCTATTGATGTCCTA
AACCCTGTTGTTAATGATTCATTAGCTATTGATTTTGATGTTTCACCTGG
ACACACTCCATCTACACGTGATGAATCTCCTAATAGTGAACCCATAATTA
ATAATGCAAACCGTCAATGTCTTTTTCTCccttctttctttgttttccgt
CATGGTACGTACCGTAATATGTTTTTTCTTGCATGGTCACTGTAGCTAGC
TTACTTTGTTTTGGTTGGATACTTAAATCTAaatattttgctgctttgaG
AGAAATTAATAAACTCAAAAATGATCTTCACAACAAGGAGCTGCTGCTGA
CAAGATATCGTTCAAATTGCAAGGTTTTACGGCTCGAAAATCAgaaactg
aagaaaaattgCATTTGCAAATTACCAATGcatgaaattacaattaaagA
TGATAAAACTTATCTTTTTACATTGGGATTGAGGAGGTTTTCACTTTTaa
taaactttttgactttatttttccatttcatttgtTAAACGCAGATGGGT
TGGATTTAAATTTACTTCGACCATTTTAAAgcgcaaattttcaaaaattc
caaagaGAATGGTTTCTGAACGAAAATTGCGTGGAAAAGATGAATTTTTA
ATGTTGTTGATGAAGTTGAGACTTGCTTTATTGGAGAAGCATTTGGCTAA
CCGTTTTAAAGTTTCATTGACAACCACCAGTCGCATCGTTCAAACCTGGT
TGAAAGTCACATCCTCAATTTTAAAGTCATTTGTTTTATTCTTGATCAAG
GTACACTTAATGTAACTAAGCCACCTGTTTTTAAACCAATTTTAAATCTT
CATTCCATCATCGACGCAACAGAACTCTTTATAAAAACACCTAAAGGCCT
CATCGTTCAACGTTTTACATGGAGGAAC Coding sequence (CDS) from alignment at scaffold_233:1150561..1151788 >TCONS_00053767 ID=TCONS_00053767|Name=TCONS_00053767|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_233:1150561..1151788 (Clytia hemisphaerica)
ATGGTCACTGTAGCTAGCTTACTTTGTTTTGGTTGGATACTTAAATCTAa
atattttgctgctttgaGAGAAATTAATAAACTCAAAAATGATCTTCACA
ACAAGGAGCTGCTGCTGACAAGATATCGTTCAAATTGCAAGGTTTTACGG
CTCGAAAATCAgaaactgaagaaaaattgCATTTGCAAATTACCAATGca
tgaaattacaattaaagATGATAAAACTTATCTTTTTACATTGGGATTGA
GGAGGTTTTCACTTTTaataaactttttgactttatttttccatttcatt
tgtTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053767-exon-scaffold_233-1491911889:1150561..1151788 | TCONS_00053767-exon-scaffold_233-1491911889:1150561..1151788 | Clytia hemisphaerica | exon |
| TCONS_00053767-exon-scaffold_233-1510915933:1150561..1151788 | TCONS_00053767-exon-scaffold_233-1510915933:1150561..1151788 | Clytia hemisphaerica | exon |
| TCONS_00053767-exon-scaffold_233-1575043694:1150561..1151788 | TCONS_00053767-exon-scaffold_233-1575043694:1150561..1151788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1150561..1151788 . |
Blast
The following BLAST results are available for this feature:
|
