TCONS_00053769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053769
Unique NameTCONS_00053769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053769 ID=TCONS_00053769|Name=TCONS_00053769|organism=Clytia hemisphaerica|type=transcript|length=528bp
AAAAGCGCATCAATCTATTTAAAGAACTCGCTACAAAATTTTGTGAGAGA
TACCTTTCTTACTAGGAAAGTTTCTTTAAATGTTGGCAAAATATTGTGCA
GGAATCGTTACGTTACAGAGCTAAAAACAGAGAGTTCCCTGGTACATATA
GATGCATTGAAGGCGAGGTTTCGCGGCTCGTTGACGTGTGCTGGCTTGGT
ACGTGCTTAACCATTGAATTAAAGTTCAAAGCATGTTTTCACTATGAATG
ATTTAACCGGAATAGTGTAACATTATTATTAAGTAATAGTTTTGCAAGTG
TAGTTGACGCTCTTCAATTCGACGCTCTACCACTTGATACATTTGATACT
ATTCAGTGATATGGAAAGTCACAGTCAGCAAGAAACCTTCATAAACGACG
CTCAgctattcgatgaaaatccaatcaaAATTCGAATCAGAGTGCGTCAA
CACTGTATTTATTAGGAAATTGTATTTAGTAACCTATGTAAATTTaggta
aatttatttttaatataaaTTATGTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_233:1157791..1158318

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053769 ID=TCONS_00053769|Name=TCONS_00053769|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_233:1157791..1158318 (Clytia hemisphaerica)
GTCACATAAtttatattaaaaataaatttacctAAATTTACATAGGTTAC
TAAATACAATTTCCTAATAAATACAGTGTTGACGCACTCTGATTCGAATT
ttgattggattttcatcgaatagcTGAGCGTCGTTTATGAAGGTTTCTTG
CTGACTGTGACTTTCCATATCACTGAATAGTATCAAATGTATCAAGTGGT
AGAGCGTCGAATTGAAGAGCGTCAACTACACTTGCAAAACTATTACTTAA
TAATAATGTTACACTATTCCGGTTAAATCATTCATAGTGAAAACATGCTT
TGAACTTTAATTCAATGGTTAAGCACGTACCAAGCCAGCACACGTCAACG
AGCCGCGAAACCTCGCCTTCAATGCATCTATATGTACCAGGGAACTCTCT
GTTTTTAGCTCTGTAACGTAACGATTCCTGCACAATATTTTGCCAACATT
TAAAGAAACTTTCCTAGTAAGAAAGGTATCTCTCACAAAATTTTGTAGCG
AGTTCTTTAAATAGATTGATGCGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033931XLOC_033931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053769-exon-scaffold_233-1491911889:1157791..1158318TCONS_00053769-exon-scaffold_233-1491911889:1157791..1158318Clytia hemisphaericaexon
TCONS_00053769-exon-scaffold_233-1510915933:1157791..1158318TCONS_00053769-exon-scaffold_233-1510915933:1157791..1158318Clytia hemisphaericaexon
TCONS_00053769-exon-scaffold_233-1575043694:1157791..1158318TCONS_00053769-exon-scaffold_233-1575043694:1157791..1158318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1157791..1158318 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11215	0.542263	0.377772	0.492787	2.54967	2.25181	0.57194	1.33861	1.78066	0.348259	1.46479	1.70358	0.147932	0.153629	0.189455	0.203315	0.751401	0.0855736	0	0.123713	0.430118	0.157347	0.382552	0.115932	0.119407	0.53284	0.304997	0.162751	0.123441	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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